RchiOBHm_Chr6g0307031

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000358
Physical Location & Seq
Reverse (-)
65564337 .. 65568029
3693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27604

Sequence Viewer

Length: 1200 bp
ATGTCCTCGCGGAAAGTGCATAGTAGACTACACCATGGGGATGACTCTGTTGGTCGTTTCAGCGAGATGAGTGGAAAGGGGAAGACGGTTTCAGAAGCCAAAAAAGTATGCAAAATTTCTGTAATGGATGATGAGGATCTGCTTGCTCTAATCGCCAATAAGATTAGCAACCCAGATGATAGAAGATCATTTTCGGAGGTCTGCAAGCAATGGCTGAGAGTGGAAGGTCTAAACCGATCATCCCTTCGTCTTCTCCGATCCGAATATCTCCGTCAGGTACTCCCTAGATTCCCAAATTTACTCACATTCGAAACCTCCGAGCCTGTCACCGACGCTGACGTCGAATTCTTAGCCCAAACATGCCCCCAACTCGAGACCATTGACCTTACTACATCAGGTCATAAACCCTTCAGTCTCTTGGGGTTTGGTCTAGTGGTGGTAGCAAATAGATGTCCAAAATTATCCAAGGTCTTGCTTAAAAGGAGAAGGTCTATTACTGATCCCGTAATTGTTTCGCTCATAAAGTTAGCACCCAATTTGGCACATTTGGATTTGGGAGGTTGCTATAACATCTCGGATAGAGCCCTCAAAGCAATTGGGTGTTGTGGTTCACTTAGCTATTTAGATTTGGAGTCGTGTGGTTTTACGGATCGGGGATTGGGTTTTCTTGCAAATGGGTCTTGCTCGAAAACGTTAAAGACATTGATACTAGCTTGGTGTAAGGGAATTACTGATGTTGGGGTCTCAAGTTTGCAGAAAATGCAATGCTTGGAGCACCTGAATTTGTCCAACAGTTCGAGGCATAAGATCACTGACATTGGGGGTGTCGCAATCTCGGCCATTAAGACCCTTAAGAAATTGAACTTGGCTGCGCTGGCCAAACTGTCCAACCGCACAGTTGCTGCTCTGGCTCAGAATTGCCCCAACTTGGAGGTGCTTGATATAAGTGAATGTAGGTTGTTAACTGGAGCTGGTATTCGTGCATTTTCGGGTCATGTGTGCTTGGAAACTATTGTTTTGCATCGTCTTCATCAAGTTAGCGCATCTGATTTGGAACACTTGGTGCTGGGATGCCCGTCATTGAAGTCTATACTTCTGCATGGTGAGGAGAGTTTGAGCAAGATATTGCCCCTGATGCGAGAGAGCACTAGAAGACTCGTGATGATGGGTAGCGCTTTTCCAACCTATTCCTTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

399

Amino Acids

43.66

Weight (kDa)

9.12

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 109 - 331 6.7e-16 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 25
AccII CGCG 1 cut(s) 10
AciI CCGC 2 cut(s) 10, 892
AclI AACGTT 1 cut(s) 692
AclWI GGATC 4 cut(s) 144, 252, 494, 657
AcoI YGGCCR 2 cut(s) 837, 876
AcsI RAATTY 4 cut(s) 114, 295, 344, 781
AcuI CTGAAG 1 cut(s) 394
AcyI GRCGYC 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 1063
AfaI GTAC 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 1174
AfiI CCNNNNNNNGG 1 cut(s) 928
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 2 cut(s) 862, 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 3 cut(s) 618, 713, 971
AluI AGCT 3 cut(s) 618, 713, 971
Alw21I GWGCWC 2 cut(s) 777, 1148
Alw26I GTCTC 3 cut(s) 368, 419, 748
AlwI GGATC 4 cut(s) 144, 252, 494, 657
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 1 cut(s) 371
Aor51HI AGCGCT 1 cut(s) 1174
AoxI GGCC 2 cut(s) 837, 876
ApeKI GCWGC 2 cut(s) 869, 902
ApoI RAATTY 4 cut(s) 114, 295, 344, 781
AspLEI GCGC 3 cut(s) 874, 1043, 1175
AsuHPI GGTGA 2 cut(s) 319, 1115
AsuII TTCGAA 1 cut(s) 309
AvaI CYCGRG 1 cut(s) 371
BalI TGGCCA 1 cut(s) 878
BanII GRGCYC 1 cut(s) 586
BarI GAAGNNNNNNTAC 2 cut(s) 478, 510
BauI CACGAG 1 cut(s) 1157
BbsI GAAGAC 4 cut(s) 89, 242, 1019, 1159
Bbv12I GWGCWC 2 cut(s) 777, 1148
BbvI GCAGC 2 cut(s) 856, 889
BccI CCATC 1 cut(s) 1159
BcoDI GTCTC 3 cut(s) 368, 419, 748
BfaI CTAG 4 cut(s) 285, 431, 710, 1149
BfoI RGCGCY 1 cut(s) 1176
BfrI CTTAAG 1 cut(s) 851
BisI GCNGC 2 cut(s) 870, 903
BlsI GCNGC 2 cut(s) 871, 904
BmeT110I CYCGRG 1 cut(s) 371
BmsI GCATC 4 cut(s) 1030, 1052, 1061, 1125
BpiI GAAGAC 4 cut(s) 89, 242, 1019, 1159
BpmI CTGGAG 1 cut(s) 987
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 730
BsaBI GATNNNNATC 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 2 cut(s) 368, 748
BsaJI CCNNGG 2 cut(s) 34, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 928
Bse1I ACTGG 1 cut(s) 970
Bse3DI GCAATG 2 cut(s) 215, 770
Bse8I GATNNNNATC 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 34, 465
BseGI GGATG 4 cut(s) 46, 133, 239, 1076
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 928
BseMI GCAATG 2 cut(s) 215, 770
BseMII CTCAG 2 cut(s) 206, 926
BseNI ACTGG 1 cut(s) 970
BseRI GAGGAG 1 cut(s) 1121
BseXI GCAGC 2 cut(s) 856, 889
BseYI CCCAGC 1 cut(s) 1066
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 839, 878
BsiHKAI GWGCWC 2 cut(s) 777, 1148
BsiHKCI CYCGRG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 928
BsmAI GTCTC 3 cut(s) 368, 419, 748
BsnI GGCC 2 cut(s) 839, 878
Bso31I GGTCTC 2 cut(s) 368, 748
BsoBI CYCGRG 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 3 cut(s) 586, 777, 1148
Bsp143I GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 2 cut(s) 10, 892
BspANI GGCC 2 cut(s) 839, 878
BspCNI CTCAG 2 cut(s) 207, 925
BspFNI CGCG 1 cut(s) 10
BspPI GGATC 4 cut(s) 144, 252, 494, 657
BspT104I TTCGAA 1 cut(s) 309
BspTI CTTAAG 1 cut(s) 851
BspTNI GGTCTC 2 cut(s) 368, 748
BsrDI GCAATG 2 cut(s) 215, 770
BsrI ACTGG 1 cut(s) 970
BssECI CCNNGG 2 cut(s) 34, 465
BssMI GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
BssNI GRCGYC 1 cut(s) 339
BssSI CACGAG 1 cut(s) 1157
BssT1I CCWWGG 2 cut(s) 34, 465
Bst2BI CACGAG 1 cut(s) 1157
Bst4CI ACNGT 4 cut(s) 88, 794, 885, 898
BstACI GRCGYC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 851
BstAPI GCANNNNNTGC 1 cut(s) 760
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 144, 206, 876
BstDEI CTNAG 4 cut(s) 215, 349, 614, 912
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 4 cut(s) 46, 133, 239, 1076
BstFNI CGCG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 1176
BstHHI GCGC 3 cut(s) 874, 1043, 1175
BstKTI GATC 7 cut(s) 139, 188, 239, 260, 502, 652, 810
BstMAI GTCTC 3 cut(s) 368, 419, 748
BstMBI GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
BstMWI GCNNNNNNNGC 8 cut(s) 16, 152, 590, 760, 836, 875, 908, 1135
BstNSI RCATGY 1 cut(s) 363
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 856, 889
BstV2I GAAGAC 4 cut(s) 89, 242, 1019, 1159
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 2 cut(s) 839, 878
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 4 cut(s) 46, 133, 239, 1076
BtsIMutI CAGTG 1 cut(s) 810
Cac8I GCNNGC 3 cut(s) 144, 206, 876
CaiI CAGNNNCTG 1 cut(s) 902
CfoI GCGC 3 cut(s) 874, 1043, 1175
CseI GACGC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 278
CviAII CATG 4 cut(s) 35, 360, 995, 1100
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 4 cut(s) 215, 349, 614, 912
DpnI GATC 7 cut(s) 138, 187, 238, 259, 501, 651, 809
DpnII GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
DraIII CACNNNGTG 1 cut(s) 1063
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 2 cut(s) 837, 876
Eco130I CCWWGG 2 cut(s) 34, 465
Eco24I GRGCYC 1 cut(s) 586
Eco31I GGTCTC 2 cut(s) 368, 748
Eco47III AGCGCT 1 cut(s) 1174
Eco57I CTGAAG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 34, 465
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 34, 465
FaeI CATG 4 cut(s) 38, 363, 998, 1103
FatI CATG 4 cut(s) 34, 359, 994, 1099
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 870, 903
FokI GGATG 4 cut(s) 53, 140, 226, 1083
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 2 cut(s) 870, 903
FspBI CTAG 4 cut(s) 285, 431, 710, 1149
GlaI GCGC 3 cut(s) 873, 1042, 1174
GluI GCNGC 2 cut(s) 870, 903
GsaI CCCAGC 1 cut(s) 1070
GsuI CTGGAG 1 cut(s) 987
HaeII RGCGCY 1 cut(s) 1176
HaeIII GGCC 2 cut(s) 839, 878
HgaI GACGC 1 cut(s) 341
HhaI GCGC 3 cut(s) 874, 1043, 1175
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 4 cut(s) 38, 363, 998, 1103
Hin6I GCGC 3 cut(s) 872, 1041, 1173
HinP1I GCGC 3 cut(s) 872, 1041, 1173
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HinfI GANTC 4 cut(s) 44, 288, 632, 1155
HpaI GTTAAC 1 cut(s) 963
HphI GGTGA 2 cut(s) 319, 1115
Hpy166II GTNNAC 3 cut(s) 26, 611, 963
Hpy188I TCNGA 8 cut(s) 94, 196, 257, 262, 319, 577, 915, 1048
Hpy188III TCNNGA 2 cut(s) 373, 1159
Hpy8I GTNNAC 3 cut(s) 26, 611, 963
Hpy99I CGWCG 2 cut(s) 335, 344
HpyAV CCTTC 4 cut(s) 218, 254, 418, 480
HpyCH4III ACNGT 4 cut(s) 88, 794, 885, 898
HpyCH4IV ACGT 2 cut(s) 339, 692
HpyCH4V TGCA 9 cut(s) 19, 111, 204, 671, 754, 763, 983, 1021, 1099
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 152, 590, 760, 836, 875, 908, 1135
HpyF3I CTNAG 4 cut(s) 215, 349, 614, 912
HpySE526I ACGT 2 cut(s) 339, 692
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 4 cut(s) 38, 363, 998, 1103
HspAI GCGC 3 cut(s) 872, 1041, 1173
KspAI GTTAAC 1 cut(s) 963
Kzo9I GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
LmnI GCTCC 2 cut(s) 772, 968
Lsp1109I GCAGC 2 cut(s) 856, 889
LweI GCATC 4 cut(s) 1030, 1052, 1061, 1125
MaeI CTAG 4 cut(s) 285, 431, 710, 1149
MaeII ACGT 2 cut(s) 339, 692
MaeIII GTNAC 1 cut(s) 325
MalI GATC 7 cut(s) 138, 187, 238, 259, 501, 651, 809
MboI GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
MboII GAAGA 5 cut(s) 94, 195, 242, 1019, 1164
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 3 cut(s) 586, 777, 1148
MlsI TGGCCA 1 cut(s) 878
MluNI TGGCCA 1 cut(s) 878
MlyI GAGTC 3 cut(s) 38, 641, 1149
MmeI TCCRAC 2 cut(s) 813, 912
MnlI CCTC 9 cut(s) 16, 127, 190, 325, 551, 596, 792, 925, 1099
Mox20I TGGCCA 1 cut(s) 878
MscI TGGCCA 1 cut(s) 878
MseI TTAA 6 cut(s) 477, 695, 843, 852, 962, 1193
MslI CAYNNNNRTG 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 851
MunI CAATTG 1 cut(s) 594
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 8 cut(s) 16, 152, 590, 760, 836, 875, 908, 1135
NcoI CCATGG 1 cut(s) 34
NdeII GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
NlaIII CATG 4 cut(s) 38, 363, 998, 1103
NmeAIII GCCGAG 1 cut(s) 815
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 309
PaeR7I CTCGAG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 3 cut(s) 253, 315, 339
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 2 cut(s) 871, 904
PleI GAGTC 3 cut(s) 38, 640, 1149
PpsI GAGTC 3 cut(s) 38, 640, 1149
Psp1406I AACGTT 1 cut(s) 692
PspFI CCCAGC 1 cut(s) 1066
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 6 cut(s) 477, 695, 843, 852, 962, 1193
SatI GCNGC 2 cut(s) 870, 903
Sau3AI GATC 7 cut(s) 136, 185, 236, 257, 499, 649, 807
SchI GAGTC 3 cut(s) 38, 641, 1149
SduI GDGCHC 3 cut(s) 586, 777, 1148
SfaNI GCATC 4 cut(s) 1030, 1052, 1061, 1125
Sfr274I CTCGAG 1 cut(s) 371
SfuI TTCGAA 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 3 cut(s) 371, 745, 851
SmoI CTYRAG 3 cut(s) 371, 745, 851
SsiI CCGC 2 cut(s) 10, 892
SspMI CTAG 4 cut(s) 285, 431, 710, 1149
StyI CCWWGG 2 cut(s) 34, 465
TaaI ACNGT 4 cut(s) 88, 794, 885, 898
TaiI ACGT 2 cut(s) 342, 695
TaqI TCGA 5 cut(s) 309, 342, 372, 686, 797
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 6 cut(s) 477, 695, 843, 852, 962, 1193
Tru9I TTAA 6 cut(s) 477, 695, 843, 852, 962, 1193
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 869, 902
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 1019
TspGWI ACGGA 2 cut(s) 260, 662
TspRI CASTG 1 cut(s) 817
Vha464I CTTAAG 1 cut(s) 851
XapI RAATTY 4 cut(s) 114, 295, 344, 781
XceI RCATGY 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 25
XspI CTAG 4 cut(s) 285, 431, 710, 1149
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.