Rroxscaffold_6G00412570

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000358
Physical Location & Seq
Forward (+)
35109934 .. 35111367
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412570.1

Sequence Viewer

Length: 1134 bp
ATGGATGCCCTATGTAACCATGAACTAGACCTAATCTTGAACTGGGTTAAGGACACAGACGATAGAAAATCATTCTCTCAGGTCAGTAAGCGATTGTGGGCAGTGGAGCGTCTGAATCGATCATCCATTCGCCTTCTCGAACTCATTCGTCTCCCTCGATTACTTGATAGATTTCCAAACTTGGTCACATTCCAAACATACCTGCCTCTAAGCAACGCTGACCTCGAATTATTAGCCCAAAGATGTCCCAAACTAGAGGTCATCGACCTTGGAATACAGGCATTGTGCTACAGAAAAGTTGGGACCCAAGGTCTATGCACACTAGCAAATAGGTGTCCCAAGTTATCCAAGGTTTTACTTCGTGGGAGGAGAATGGTGAGTGATGAGCATGATGGAATTGCGTCATTCATACCTTTACCGGATAACTTGAAGCACTTGGATTTGGGATACGTTGTGTTGGTTTCTGACAAAACCCTTGTAGCAATTGGGTCCTCAAGTTGTCCAATTACCGTTTTGAATTTGGAAAGCTGTAACATTACGGATTGTGGATTGAGATTTTTGTCAAATGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTGCAAAGTGTCATGGAATCACTGATTCTGGGGTCTCGCTCTTGCAGAAGATGTGTGCCTTGGAGGAGCTAAGTTTGGCTCATTGTCACCAAGTCACTGACGTTGGAGGTGTGGCAATCTCCGCAATTCGAACCCTCAAGAAACTGGACTTTGCTAGGGGAACCAAAGTGACAGCTTGGGGACCCACAGTGACAGACCGCACCATTCTTGCTCTCGCCGAGAATTGCCTCAACTTGGAAATGCTTGATTTGAGTGGTAATAAATTCGTGACCGGAGTTGGTATTCGTGCATTTTTGGGTCACAAGTGCTTACAATCCCTTGATCTACGCTATATTCGGGTTTATGTTAGTGGATCTGATCTGGAAGACCTAGCGCTTGCATGCCCGTCATTGAAGTCTATACTAGTAGAGGGTGGATGGAGAAAAAGATTGGTGGGTGAAATGCAAGAGAGCACTGTTAGCAGATTCATTGAGGAGAATAAGAAAAAGCTGTTGAATGCACAAACTGAAGAGGACAAGGCGCTGATGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

377

Amino Acids

41.81

Weight (kDa)

8.45

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 108 - 216 3.7e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 230 - 325 6.1e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AciI CCGC 2 cut(s) 723, 799
AclWI GGATC 1 cut(s) 961
AcsI RAATTY 2 cut(s) 517, 863
AcuI CTGAAG 1 cut(s) 1128
AfeI AGCGCT 1 cut(s) 975
AfiI CCNNNNNNNGG 1 cut(s) 835
AgsI TTSAA 5 cut(s) 40, 430, 517, 994, 1096
AhdI GACNNNNNGTC 1 cut(s) 309
AhlI ACTAGT 1 cut(s) 1003
AluBI AGCT 4 cut(s) 528, 670, 776, 1090
AluI AGCT 4 cut(s) 528, 670, 776, 1090
Alw21I GWGCWC 1 cut(s) 1055
Alw26I GTCTC 2 cut(s) 155, 640
AlwI GGATC 1 cut(s) 961
Aor51HI AGCGCT 1 cut(s) 975
ApoI RAATTY 2 cut(s) 517, 863
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 976, 1123
AspS9I GGNCC 4 cut(s) 303, 489, 598, 782
AsuHPI GGTGA 3 cut(s) 388, 680, 1049
AsuII TTCGAA 1 cut(s) 730
AvaII GGWCC 4 cut(s) 303, 489, 598, 782
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 1055
BccI CCATC 2 cut(s) 386, 1011
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 155, 640
BcuI ACTAGT 1 cut(s) 1003
BfaI CTAG 6 cut(s) 26, 254, 323, 756, 971, 1004
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 2 cut(s) 977, 1124
BfuAI ACCTGC 1 cut(s) 210
BfuI GTATCC 1 cut(s) 440
Bme18I GGWCC 4 cut(s) 303, 489, 598, 782
BmeRI GACNNNNNGTC 1 cut(s) 309
BmgT120I GGNCC 4 cut(s) 303, 489, 598, 782
BmiI GGNNCC 6 cut(s) 304, 305, 490, 763, 783, 784
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 972
Bpu14I TTCGAA 1 cut(s) 730
BpuEI CTTGAG 2 cut(s) 478, 722
Bsa29I ATCGAT 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 4 cut(s) 268, 307, 348, 660
BsaWI WCCGGW 2 cut(s) 418, 872
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 2 cut(s) 47, 750
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 268, 307, 348, 660
BseGI GGATG 3 cut(s) 10, 122, 1022
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 47, 750
BseRI GAGGAG 3 cut(s) 382, 680, 1088
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 1055
BsiSI CCGG 2 cut(s) 419, 873
BslFI GGGAC 4 cut(s) 231, 316, 321, 795
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 2 cut(s) 155, 640
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 4 cut(s) 231, 316, 321, 795
BsmI GAATGC 1 cut(s) 1102
Bso31I GGTCTC 1 cut(s) 640
Bsp119I TTCGAA 1 cut(s) 730
Bsp1286I GDGCHC 1 cut(s) 1055
Bsp143I GATC 4 cut(s) 119, 922, 953, 958
BspACI CCGC 2 cut(s) 723, 799
BspCNI CTCAG 1 cut(s) 91
BspDI ATCGAT 1 cut(s) 118
BspLI GGNNCC 6 cut(s) 304, 305, 490, 763, 783, 784
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 1 cut(s) 961
BspT104I TTCGAA 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 640
BsrI ACTGG 2 cut(s) 47, 750
BssECI CCNNGG 4 cut(s) 268, 307, 348, 660
BssMI GATC 4 cut(s) 119, 922, 953, 958
BssT1I CCWWGG 4 cut(s) 268, 307, 348, 660
Bst4CI ACNGT 3 cut(s) 511, 790, 1057
Bst6I CTCTTC 1 cut(s) 1104
BstBI TTCGAA 1 cut(s) 730
BstC8I GCNNGC 2 cut(s) 978, 982
BstDEI CTNAG 3 cut(s) 78, 209, 671
BstF5I GGATG 3 cut(s) 10, 122, 1022
BstH2I RGCGCY 2 cut(s) 977, 1124
BstHHI GCGC 2 cut(s) 976, 1123
BstKTI GATC 4 cut(s) 122, 925, 956, 961
BstMAI GTCTC 2 cut(s) 155, 640
BstMBI GATC 4 cut(s) 119, 922, 953, 958
BstMWI GCNNNNNNNGC 2 cut(s) 722, 1059
BstNSI RCATGY 1 cut(s) 984
BstSFI CTRYAG 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
Bsu15I ATCGAT 1 cut(s) 118
BsuI GTATCC 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 118
BtsCI GGATG 3 cut(s) 10, 122, 1022
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 5 cut(s) 108, 621, 696, 795, 1053
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 978, 982
CfoI GCGC 2 cut(s) 976, 1123
Cfr13I GGNCC 4 cut(s) 303, 489, 598, 782
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 2 cut(s) 98, 390
CviAII CATG 4 cut(s) 20, 389, 614, 981
CviJI RGCY 6 cut(s) 236, 528, 670, 680, 776, 1090
CviKI_1 RGCY 6 cut(s) 236, 528, 670, 680, 776, 1090
DdeI CTNAG 3 cut(s) 78, 209, 671
DpnI GATC 4 cut(s) 121, 924, 955, 960
DpnII GATC 4 cut(s) 119, 922, 953, 958
DriI GACNNNNNGTC 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 1104
Eam1105I GACNNNNNGTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 1104
Eco130I CCWWGG 4 cut(s) 268, 307, 348, 660
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 4 cut(s) 303, 489, 598, 782
Eco47III AGCGCT 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 1128
EcoO109I RGGNCCY 3 cut(s) 303, 489, 782
EcoT14I CCWWGG 4 cut(s) 268, 307, 348, 660
ErhI CCWWGG 4 cut(s) 268, 307, 348, 660
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 4 cut(s) 23, 392, 617, 984
FaqI GGGAC 4 cut(s) 231, 316, 321, 795
FatI CATG 4 cut(s) 19, 388, 613, 980
FokI GGATG 3 cut(s) 17, 109, 1029
FspBI CTAG 6 cut(s) 26, 254, 323, 756, 971, 1004
GlaI GCGC 2 cut(s) 975, 1122
HaeII RGCGCY 2 cut(s) 977, 1124
HapII CCGG 2 cut(s) 419, 873
HgaI GACGC 2 cut(s) 98, 390
HhaI GCGC 2 cut(s) 976, 1123
Hin1II CATG 4 cut(s) 23, 392, 617, 984
Hin6I GCGC 2 cut(s) 974, 1121
HinP1I GCGC 2 cut(s) 974, 1121
HinfI GANTC 4 cut(s) 115, 618, 626, 1065
HpaII CCGG 2 cut(s) 419, 873
HphI GGTGA 3 cut(s) 388, 680, 1049
Hpy188I TCNGA 3 cut(s) 114, 466, 958
Hpy188III TCNNGA 5 cut(s) 37, 137, 739, 868, 962
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 3 cut(s) 511, 790, 1057
HpyCH4IV ACGT 2 cut(s) 450, 702
HpyCH4V TGCA 7 cut(s) 318, 605, 646, 890, 980, 1045, 1100
HpyF10VI GCNNNNNNNGC 2 cut(s) 722, 1059
HpyF3I CTNAG 3 cut(s) 78, 209, 671
HpySE526I ACGT 2 cut(s) 450, 702
Hsp92II CATG 4 cut(s) 23, 392, 617, 984
HspAI GCGC 2 cut(s) 974, 1121
KflI GGGWCCC 2 cut(s) 303, 782
Kzo9I GATC 4 cut(s) 119, 922, 953, 958
LmnI GCTCC 2 cut(s) 106, 667
LpnPI CCDG 9 cut(s) 28, 65, 215, 263, 432, 615, 731, 886, 947
MaeI CTAG 6 cut(s) 26, 254, 323, 756, 971, 1004
MaeII ACGT 2 cut(s) 450, 702
MaeIII GTNAC 9 cut(s) 14, 184, 530, 686, 694, 769, 790, 868, 899
MalI GATC 4 cut(s) 121, 924, 955, 960
MboI GATC 4 cut(s) 119, 922, 953, 958
MboII GAAGA 3 cut(s) 661, 977, 1121
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 1 cut(s) 1055
MluCI AATT 9 cut(s) 227, 396, 483, 504, 517, 593, 726, 823, 863
MmeI TCCRAC 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 48
MspI CCGG 2 cut(s) 419, 873
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 1102
MwoI GCNNNNNNNGC 2 cut(s) 722, 1059
NdeII GATC 4 cut(s) 119, 922, 953, 958
NlaIII CATG 4 cut(s) 23, 392, 617, 984
NlaIV GGNNCC 6 cut(s) 304, 305, 490, 763, 783, 784
NmeAIII GCCGAG 1 cut(s) 844
NmuCI GTSAC 7 cut(s) 184, 686, 694, 769, 790, 868, 899
NspI RCATGY 1 cut(s) 984
NspV TTCGAA 1 cut(s) 730
PaeI GCATGC 1 cut(s) 984
PcsI WCGNNNNNNNCGW 2 cut(s) 154, 222
PctI GAATGC 1 cut(s) 1102
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 4 cut(s) 115, 618, 626, 1065
PpuMI RGGWCCY 3 cut(s) 303, 489, 782
Psp5II RGGWCCY 3 cut(s) 303, 489, 782
PspN4I GGNNCC 6 cut(s) 304, 305, 490, 763, 783, 784
PspPI GGNCC 4 cut(s) 303, 489, 598, 782
PspPPI RGGWCCY 3 cut(s) 303, 489, 782
PsuI RGATCY 1 cut(s) 953
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 4 cut(s) 119, 922, 953, 958
Sau96I GGNCC 4 cut(s) 303, 489, 598, 782
SduI GDGCHC 1 cut(s) 1055
SfcI CTRYAG 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 730
SinI GGWCC 4 cut(s) 303, 489, 598, 782
SmlI CTYRAG 2 cut(s) 493, 737
SmoI CTYRAG 2 cut(s) 493, 737
SpeI ACTAGT 1 cut(s) 1003
SphI GCATGC 1 cut(s) 984
Sse9I AATT 9 cut(s) 227, 396, 483, 504, 517, 593, 726, 823, 863
SsiI CCGC 2 cut(s) 723, 799
SspMI CTAG 6 cut(s) 26, 254, 323, 756, 971, 1004
StyI CCWWGG 4 cut(s) 268, 307, 348, 660
TaaI ACNGT 3 cut(s) 511, 790, 1057
TaiI ACGT 2 cut(s) 453, 705
TaqI TCGA 6 cut(s) 118, 138, 157, 225, 264, 730
TasI AATT 9 cut(s) 227, 396, 483, 504, 517, 593, 726, 823, 863
TfiI GAWTC 4 cut(s) 115, 618, 626, 1065
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 5 cut(s) 108, 628, 703, 795, 1060
TseFI GTSAC 7 cut(s) 184, 686, 694, 769, 790, 868, 899
Tsp45I GTSAC 7 cut(s) 184, 686, 694, 769, 790, 868, 899
TspDTI ATGAA 3 cut(s) 36, 397, 1057
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 5 cut(s) 108, 628, 703, 795, 1060
VpaK11BI GGWCC 4 cut(s) 303, 489, 598, 782
XapI RAATTY 2 cut(s) 517, 863
XceI RCATGY 1 cut(s) 984
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 6 cut(s) 26, 254, 323, 756, 971, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.