Rorug06G0355000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000358
Physical Location & Seq
Reverse (-)
50270955 .. 50271811
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0355000.1

Sequence Viewer

Length: 501 bp
ATGTCTCTCCCAGCCATTCTCGCCGTTCTCGTCCTCCTTTCACCGTTCTCCTTCGCCGTCGCCGATGACGATACCCGGTCGGCCTACGACGTCATCCAGGACTTCAACTTCCCAATGGGGATTCTCCCCAAGGGCGTCACCGGCTACGACCTGGACCGGAGCACCGGCAAGTGGGCAGCCTATTTCGACGGCGCGTGTAGCTTCGCGCTCGAAGGCTCGTACCAGCTCAAGTACAAGTCCACCATCACCGGCACTATCTCCGAGAACAGGCTCAAGGACCTGACCGGAGTCAGCGTCAAGGTCTTGTTCCTGTGGCTCAATATCGTTGAGGTGTCTCGGAGCGGCGACGACCTGGATTTCTCGGTGGGGATCGCTTCGGCGTCGTTTCCGATTGACAATTTCTACGAGTGTCCGCAGTGCGGGTGTGGATTGAATTGCAGCCCTGCGCCGCCTCAAGTAAGGAAGATTAAGATGAAAAAATCTCTGGTTTCTTCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

166

Amino Acids

18.03

Weight (kDa)

5.05

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 28 - 134 5.4e-35 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 342
AccII CGCG 2 cut(s) 194, 206
AciI CCGC 4 cut(s) 342, 413, 420, 449
AclWI GGATC 1 cut(s) 377
AcyI GRCGYC 3 cut(s) 90, 135, 380
AfaI GTAC 2 cut(s) 221, 233
AfiI CCNNNNNNNGG 3 cut(s) 171, 267, 419
AgsI TTSAA 2 cut(s) 106, 433
AjnI CCWGG 3 cut(s) 96, 150, 351
AluBI AGCT 2 cut(s) 201, 226
AluI AGCT 2 cut(s) 201, 226
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 2 cut(s) 9, 339
AlwI GGATC 1 cut(s) 377
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 176, 438
AspLEI GCGC 3 cut(s) 194, 208, 448
AspS9I GGNCC 2 cut(s) 154, 277
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 3 cut(s) 33, 130, 238
AvaII GGWCC 2 cut(s) 154, 277
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 188, 450
BccI CCATC 1 cut(s) 251
BceAI ACGGC 3 cut(s) 8, 41, 205
BciT130I CCWGG 3 cut(s) 98, 152, 353
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 9, 339
BisI GCNGC 4 cut(s) 177, 343, 439, 449
BlsI GCNGC 4 cut(s) 178, 344, 440, 450
Bme1390I CCNGG 4 cut(s) 76, 98, 152, 353
Bme18I GGWCC 2 cut(s) 154, 277
BmgT120I GGNCC 2 cut(s) 154, 277
BmrFI CCNGG 4 cut(s) 76, 98, 152, 353
BoxI GACNNNNGTC 1 cut(s) 287
BpuEI CTTGAG 3 cut(s) 212, 257, 438
BpuMI CCSGG 1 cut(s) 76
BsaHI GRCGYC 3 cut(s) 90, 135, 380
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 2 cut(s) 156, 284
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 267, 419
Bse118I RCCGGY 3 cut(s) 140, 164, 248
BseBI CCWGG 3 cut(s) 98, 152, 353
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 3 cut(s) 171, 267, 419
BseXI GCAGC 2 cut(s) 188, 450
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 2 cut(s) 194, 206
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 6 cut(s) 76, 141, 157, 165, 249, 285
BslI CCNNNNNNNGG 3 cut(s) 171, 267, 419
BsmAI GTCTC 2 cut(s) 9, 339
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 369
BspACI CCGC 4 cut(s) 342, 413, 420, 449
BspANI GGCC 1 cut(s) 83
BspFNI CGCG 2 cut(s) 194, 206
BspPI GGATC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 342
BsrFI RCCGGY 3 cut(s) 140, 164, 248
BssAI RCCGGY 3 cut(s) 140, 164, 248
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 369
BssNI GRCGYC 3 cut(s) 90, 135, 380
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 3 cut(s) 98, 152, 353
Bst4CI ACNGT 1 cut(s) 45
BstACI GRCGYC 3 cut(s) 90, 135, 380
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 2 cut(s) 194, 206
BstHHI GCGC 3 cut(s) 194, 208, 448
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 2 cut(s) 9, 339
BstMBI GATC 1 cut(s) 369
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 3 cut(s) 20, 141, 198
BstNI CCWGG 3 cut(s) 98, 152, 353
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 4 cut(s) 74, 96, 150, 351
BstUI CGCG 2 cut(s) 194, 206
BstV1I GCAGC 2 cut(s) 188, 450
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 422
CfoI GCGC 3 cut(s) 194, 208, 448
Cfr10I RCCGGY 3 cut(s) 140, 164, 248
Cfr13I GGNCC 2 cut(s) 154, 277
CseI GACGC 3 cut(s) 124, 283, 369
Csp6I GTAC 2 cut(s) 220, 232
CviQI GTAC 2 cut(s) 220, 232
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 154, 277
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 3 cut(s) 96, 150, 351
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FauI CCCGC 1 cut(s) 413
Fnu4HI GCNGC 4 cut(s) 177, 343, 439, 449
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 177, 343, 439, 449
GlaI GCGC 3 cut(s) 193, 207, 447
GluI GCNGC 4 cut(s) 177, 343, 439, 449
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 83
HapII CCGG 6 cut(s) 76, 141, 157, 165, 249, 285
HgaI GACGC 3 cut(s) 124, 283, 369
HhaI GCGC 3 cut(s) 194, 208, 448
Hin1I GRCGYC 3 cut(s) 90, 135, 380
Hin6I GCGC 3 cut(s) 192, 206, 446
HinP1I GCGC 3 cut(s) 192, 206, 446
HinfI GANTC 2 cut(s) 121, 288
HpaII CCGG 6 cut(s) 76, 141, 157, 165, 249, 285
HphI GGTGA 3 cut(s) 33, 130, 238
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 3 cut(s) 262, 339, 390
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 5 cut(s) 62, 92, 191, 350, 385
HpyAV CCTTC 2 cut(s) 61, 206
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 141, 198
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 3 cut(s) 90, 135, 380
HspAI GCGC 3 cut(s) 192, 206, 446
Kzo9I GATC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 159, 339
Lsp1109I GCAGC 2 cut(s) 188, 450
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 371
MbiI CCGCTC 1 cut(s) 342
MboI GATC 1 cut(s) 369
MboII GAAGA 2 cut(s) 475, 483
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 2 cut(s) 397, 433
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 3 cut(s) 44, 322, 462
MseI TTAA 1 cut(s) 468
MspI CCGG 6 cut(s) 76, 141, 157, 165, 249, 285
MspR9I CCNGG 4 cut(s) 76, 98, 152, 353
MvaI CCWGG 3 cut(s) 98, 152, 353
MvnI CGCG 2 cut(s) 194, 206
MwoI GCNNNNNNNGC 3 cut(s) 20, 141, 198
NciI CCSGG 1 cut(s) 76
NdeII GATC 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 3 cut(s) 27, 60, 66
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 4 cut(s) 178, 344, 440, 450
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 3 cut(s) 96, 150, 351
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 3 cut(s) 96, 150, 351
PspPI GGNCC 2 cut(s) 154, 277
PspPPI RGGWCCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 221, 233
RsaNI GTAC 2 cut(s) 220, 232
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 4 cut(s) 177, 343, 439, 449
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 2 cut(s) 154, 277
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 4 cut(s) 76, 98, 152, 353
SduI GDGCHC 1 cut(s) 164
SetI ASST 8 cut(s) 93, 153, 203, 228, 282, 303, 333, 354
SinI GGWCC 2 cut(s) 154, 277
SmlI CTYRAG 3 cut(s) 227, 272, 453
SmoI CTYRAG 3 cut(s) 227, 272, 453
Sse9I AATT 2 cut(s) 397, 433
SsiI CCGC 4 cut(s) 342, 413, 420, 449
StyD4I CCNGG 4 cut(s) 74, 96, 150, 351
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 186, 210
TasI AATT 2 cut(s) 397, 433
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 345, 451
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 176, 438
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 488
TspRI CASTG 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 154, 277
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.