FvH4_5g33281

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000358
Physical Location & Seq
Reverse (-)
24069713 .. 24070313
601 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33281.t1

Sequence Viewer

Length: 339 bp
ATGCTATCTGACATTTCTGACGTTGGAGGTGATGCAATCTCCGCCATTCAGACCCTCAAGAAGTTGAACTTGGGGGGTCAACTGTTTCAGGGACAACGACCAATTATTGCTATTGCTAAGGATTGCATAAACTTGGAAGTGCTTAATCTATGTCGTAGTTTGGTGATTACTAGAAATGGTATTCATGCATTTTTCGGTCACAAGTGCTTGCAATCTCTTGATATAGCTGGTTGCTGGTCTGCTCAATTTAGTGGATCTGATTTAGAAAACCTAGCGCTCACATGCCCTTCGTTGAAGTCGATTGTGGTGCAAGAAAGCATGCTAGAAACTGCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

113

Amino Acids

11.95

Weight (kDa)

5.51

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 262
AfeI AGCGCT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 67, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AlwI GGATC 1 cut(s) 262
Aor51HI AGCGCT 1 cut(s) 276
AspLEI GCGC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 41, 175
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BfaI CTAG 3 cut(s) 171, 272, 323
BfoI RGCGCY 1 cut(s) 278
BmsI GCATC 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 262
BssMI GATC 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 209, 320
BstDEI CTNAG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 1 cut(s) 257
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 285, 322
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 209, 320
CfoI GCGC 1 cut(s) 277
CviAII CATG 3 cut(s) 185, 282, 319
CviJI RGCY 1 cut(s) 227
CviKI_1 RGCY 1 cut(s) 227
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 31
Eco47III AGCGCT 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 190
FaeI CATG 3 cut(s) 188, 285, 322
FaiI YATR 6 cut(s) 128, 151, 186, 224, 283, 320
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 105
FatI CATG 3 cut(s) 184, 281, 318
FspBI CTAG 3 cut(s) 171, 272, 323
GlaI GCGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 278
HhaI GCGC 1 cut(s) 277
Hin1II CATG 3 cut(s) 188, 285, 322
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HphI GGTGA 2 cut(s) 41, 175
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 4 cut(s) 10, 19, 51, 259
Hpy188III TCNNGA 2 cut(s) 58, 218
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 5 cut(s) 35, 126, 188, 211, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 3 cut(s) 188, 285, 322
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 254
LpnPI CCDG 4 cut(s) 74, 213, 220, 318
LweI GCATC 1 cut(s) 22
MaeI CTAG 3 cut(s) 171, 272, 323
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MflI RGATCY 1 cut(s) 254
MluCI AATT 2 cut(s) 102, 245
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 2 cut(s) 20, 65
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 254
NlaIII CATG 3 cut(s) 188, 285, 322
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 2 cut(s) 285, 322
PaeI GCATGC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PsuI RGATCY 1 cut(s) 254
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 1 cut(s) 254
SetI ASST 4 cut(s) 24, 31, 229, 273
SfaNI GCATC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SphI GCATGC 1 cut(s) 322
Sse9I AATT 2 cut(s) 102, 245
SsiI CCGC 1 cut(s) 42
SspMI CTAG 3 cut(s) 171, 272, 323
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 299
TaqII GACCGA 1 cut(s) 185
TasI AATT 2 cut(s) 102, 245
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 173
XceI RCATGY 2 cut(s) 285, 322
XspI CTAG 3 cut(s) 171, 272, 323
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.