FvH4_6g07350

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000358
Physical Location & Seq
Forward (+)
4416019 .. 4419831
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07350.t1

Sequence Viewer

Length: 1098 bp
ATGAATAAGATAGTAGCTGACGAACTAGGCCAGATCCTGAGACTGGTCACCGACCCAGCTGATAGAAAATCAGCTTCTCAGGTCTGCAAGGGGTGGTGGCTCACGGAGGGTCTGAGCCGATCATCACTCCTAGTTCTCAACCTGGATCATCTTCCTCGATTACTAACTAGGTACCCAAACTTAACCACATTCGAAACACAAAGGGCAGTGAGCAATGCCGACCTCGCATTATTGGCCCAGTCATGCCCCAAATTGGAGGCCTTCATACTTGACCATTTATCATTTGCTGATGAACCGGTCGCTCGTTTACGGGCCCGTCCGAAAGTCGGGGACGAAGGTTTGTGCGCTGTGGCAAATGGGTGTCCCAAGTTGTCCAAGATTGTGATCAGAAGGAGTTCTGTTGGACTGCTTGGAATTATGTCCATGATTACTTCAGCAGCACATAACTTGACTCATTTGGATTTGGGTAGTTGTTATAGGGTCACTGACCAAGTCCTTGAAGCAATTGGATCATCTAGTTGCCTCATTCGCTTTTTGAATTTGAGATGTTGCTACAATATTACTGATGTTGGATTGAGTTTTTTGGCAAATGGGTCTTGCTCAAAAACCATCGAGCAATTGAACCTTTCCAGCTGTTGTGGAATCACTAATGACGGGGTCTTGCTGTTGTGCAAGATGCGTGTTTTGGAGGAGCTGGATTTAAGCTGCTGTTTCGACATTACTGATGTTGGAGGTCAAGGAATCTCCACAATTGGAACCCTCAAGATGTTGAAGTTGCGGTCTGCAATAACAGAAAGAACCATTGTAGCTCTTGCTAAGAATTGCTTAAACTTGGAGGTGCTTGATCTAGATGGTTGTACAGGGATAACTACAGCCTGTATTGATGCATTTTCGGGTCACAAGTGCTTGCGATTCCTTATTCTACTACATTGTTTGTCTGATGATTTAAGAGGATATGCTTTCGAAAGCCTAGCATTTGGATGCCCTTCATTGGAGTCGATTGTGGTGGAAGAAAGTTGGAGAGAGAGGCTGTTGCAGGAAATGCAAGAGAGTACTGTCAGCAGAATTCTAGATTTCAGGAGAAATTTGGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

366

Amino Acids

39.99

Weight (kDa)

6.11

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 9 - 41 4.2e-09 F-box
DUF7885 PF25372 145 - 223 1.2e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AciI CCGC 1 cut(s) 778
AclWI GGATC 3 cut(s) 28, 153, 517
AcsI RAATTY 3 cut(s) 538, 1065, 1084
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 3 cut(s) 173, 859, 1054
AfiI CCNNNNNNNGG 4 cut(s) 43, 253, 326, 991
AgeI ACCGGT 1 cut(s) 295
AgsI TTSAA 4 cut(s) 500, 538, 622, 772
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 7 cut(s) 17, 59, 74, 633, 694, 705, 809
AluI AGCT 7 cut(s) 17, 59, 74, 633, 694, 705, 809
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 3 cut(s) 28, 153, 517
AlwNI CAGNNNCTG 1 cut(s) 37
AoxI GGCC 4 cut(s) 28, 234, 258, 312
ApaI GGGCCC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 437, 705
ApoI RAATTY 3 cut(s) 538, 1065, 1084
AsiGI ACCGGT 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 394
Asp718I GGTACC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 3 cut(s) 235, 312, 313
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 2 cut(s) 192, 963
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 449, 692
BccI CCATC 2 cut(s) 617, 845
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 7 cut(s) 26, 131, 168, 516, 848, 971, 1070
BfmI CTRYAG 1 cut(s) 870
BisI GCNGC 2 cut(s) 438, 706
BlsI GCNGC 2 cut(s) 439, 707
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 235, 312, 313
BmiI GGNNCC 3 cut(s) 173, 314, 757
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 3 cut(s) 666, 874, 971
BmuI ACTGGG 1 cut(s) 232
Bpu14I TTCGAA 2 cut(s) 192, 963
BpuEI CTTGAG 1 cut(s) 746
BsaBI GATNNNNATC 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 253, 326, 991
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 48, 238
Bse3DI GCAATG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 986
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 4 cut(s) 43, 253, 326, 991
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 3 cut(s) 29, 92, 104
BseNI ACTGG 2 cut(s) 48, 238
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 2 cut(s) 449, 692
BseYI CCCAGC 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 4 cut(s) 30, 236, 260, 314
BshNI GGYRCC 1 cut(s) 171
BshTI ACCGGT 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 2 cut(s) 344, 348
BslI CCNNNNNNNGG 4 cut(s) 43, 253, 326, 991
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 344, 348
BsnI GGCC 4 cut(s) 30, 236, 260, 314
Bsp119I TTCGAA 2 cut(s) 192, 963
Bsp120I GGGCCC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 857
Bsp143I GATC 6 cut(s) 33, 119, 145, 384, 509, 844
BspACI CCGC 1 cut(s) 778
BspANI GGCC 4 cut(s) 30, 236, 260, 314
BspCNI CTCAG 3 cut(s) 30, 91, 105
BspLI GGNNCC 3 cut(s) 173, 314, 757
BspPI GGATC 3 cut(s) 28, 153, 517
BspT104I TTCGAA 2 cut(s) 192, 963
BspT107I GGYRCC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 857
BsrI ACTGG 2 cut(s) 48, 238
BssAI RCCGGY 1 cut(s) 295
BssMI GATC 6 cut(s) 33, 119, 145, 384, 509, 844
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 1057
BstAPI GCANNNNNTGC 1 cut(s) 1042
BstAUI TGTACA 1 cut(s) 857
BstBI TTCGAA 2 cut(s) 192, 963
BstC8I GCNNGC 1 cut(s) 908
BstDEI CTNAG 5 cut(s) 38, 78, 113, 816, 1095
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 986
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 6 cut(s) 36, 122, 148, 387, 512, 847
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 6 cut(s) 33, 119, 145, 384, 509, 844
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 224, 233, 528, 1042
BstNI CCWGG 1 cut(s) 143
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 870
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 449, 692
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 4 cut(s) 30, 236, 260, 314
BtsCI GGATG 1 cut(s) 986
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 483
Cac8I GCNNGC 1 cut(s) 908
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 3 cut(s) 235, 312, 313
Csp6I GTAC 3 cut(s) 172, 858, 1053
CspAI ACCGGT 1 cut(s) 295
CviAII CATG 2 cut(s) 243, 424
CviQI GTAC 3 cut(s) 172, 858, 1053
DdeI CTNAG 5 cut(s) 38, 78, 113, 816, 1095
DpnI GATC 6 cut(s) 35, 121, 147, 386, 511, 846
DpnII GATC 6 cut(s) 33, 119, 145, 384, 509, 844
Eco147I AGGCCT 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 1065
EcoRII CCWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 2 cut(s) 246, 427
FaiI YATR 7 cut(s) 244, 266, 419, 425, 444, 477, 957
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 2 cut(s) 344, 348
FatI CATG 2 cut(s) 242, 423
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 438, 706
FokI GGATG 1 cut(s) 993
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 2 cut(s) 438, 706
FspBI CTAG 7 cut(s) 26, 131, 168, 516, 848, 971, 1070
GlaI GCGC 1 cut(s) 346
GluI GCNGC 2 cut(s) 438, 706
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 4 cut(s) 30, 236, 260, 314
HapII CCGG 1 cut(s) 296
HhaI GCGC 1 cut(s) 347
Hin1II CATG 2 cut(s) 246, 427
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 5 cut(s) 451, 642, 741, 912, 995
HpaII CCGG 1 cut(s) 296
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 4 cut(s) 114, 321, 389, 940
Hpy188III TCNNGA 5 cut(s) 37, 763, 848, 1070, 1078
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 271, 329, 384, 996
HpyCH4III ACNGT 1 cut(s) 1057
HpyCH4V TGCA 6 cut(s) 87, 672, 785, 887, 1036, 1045
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 233, 528, 1042
HpyF3I CTNAG 5 cut(s) 38, 78, 113, 816, 1095
Hsp92II CATG 2 cut(s) 246, 427
HspAI GCGC 1 cut(s) 345
KpnI GGTACC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 6 cut(s) 33, 119, 145, 384, 509, 844
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 2 cut(s) 449, 692
LweI GCATC 3 cut(s) 666, 874, 971
MaeI CTAG 7 cut(s) 26, 131, 168, 516, 848, 971, 1070
MaeIII GTNAC 3 cut(s) 46, 481, 896
MalI GATC 6 cut(s) 35, 121, 147, 386, 511, 846
MboI GATC 6 cut(s) 33, 119, 145, 384, 509, 844
MboII GAAGA 2 cut(s) 143, 1022
MfeI CAATTG 3 cut(s) 504, 617, 750
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 9 cut(s) 251, 414, 504, 538, 617, 750, 820, 1065, 1084
MlyI GAGTC 2 cut(s) 445, 1004
MmeI TCCRAC 4 cut(s) 382, 550, 709, 998
Mph1103I ATGCAT 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 4 cut(s) 182, 701, 827, 947
MslI CAYNNNNRTG 1 cut(s) 979
MspA1I CMGCKG 2 cut(s) 59, 633
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 3 cut(s) 504, 617, 750
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 224, 233, 528, 1042
NdeII GATC 6 cut(s) 33, 119, 145, 384, 509, 844
NlaIII CATG 2 cut(s) 246, 427
NlaIV GGNNCC 3 cut(s) 173, 314, 757
NmuCI GTSAC 3 cut(s) 46, 481, 896
NsiI ATGCAT 1 cut(s) 889
NspV TTCGAA 2 cut(s) 192, 963
PceI AGGCCT 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 3 cut(s) 642, 741, 912
PflFI GACNNNGTC 2 cut(s) 491, 656
PinAI ACCGGT 1 cut(s) 295
PkrI GCNGC 2 cut(s) 439, 707
PleI GAGTC 2 cut(s) 445, 1003
PpsI GAGTC 2 cut(s) 445, 1003
Psp6I CCWGG 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 173, 314, 757
PspOMI GGGCCC 1 cut(s) 312
PspPI GGNCC 3 cut(s) 235, 312, 313
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 33
PsyI GACNNNGTC 2 cut(s) 491, 656
PvuII CAGCTG 2 cut(s) 59, 633
RsaI GTAC 3 cut(s) 173, 859, 1054
RsaNI GTAC 3 cut(s) 172, 858, 1053
RseI CAYNNNNRTG 1 cut(s) 979
SaqAI TTAA 4 cut(s) 182, 701, 827, 947
SatI GCNGC 2 cut(s) 438, 706
Sau3AI GATC 6 cut(s) 33, 119, 145, 384, 509, 844
Sau96I GGNCC 3 cut(s) 235, 312, 313
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 2 cut(s) 445, 1004
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 316
SfaNI GCATC 3 cut(s) 666, 874, 971
SfcI CTRYAG 1 cut(s) 870
SfuI TTCGAA 2 cut(s) 192, 963
SmiMI CAYNNNNRTG 1 cut(s) 979
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 9 cut(s) 251, 414, 504, 538, 617, 750, 820, 1065, 1084
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 1 cut(s) 778
SspI AATATT 1 cut(s) 559
SspMI CTAG 7 cut(s) 26, 131, 168, 516, 848, 971, 1070
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 1057
TaqI TCGA 6 cut(s) 157, 192, 612, 714, 963, 998
TasI AATT 9 cut(s) 251, 414, 504, 538, 617, 750, 820, 1065, 1084
TatI WGTACW 2 cut(s) 857, 1052
TfiI GAWTC 3 cut(s) 642, 741, 912
Tru1I TTAA 4 cut(s) 182, 701, 827, 947
Tru9I TTAA 4 cut(s) 182, 701, 827, 947
TscAI CASTG 2 cut(s) 213, 490
TseFI GTSAC 3 cut(s) 46, 481, 896
TseI GCWGC 2 cut(s) 437, 705
Tsp45I GTSAC 3 cut(s) 46, 481, 896
TspDTI ATGAA 4 cut(s) 17, 253, 306, 978
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 213, 490
Tth111I GACNNNGTC 2 cut(s) 491, 656
XapI RAATTY 3 cut(s) 538, 1065, 1084
XbaI TCTAGA 2 cut(s) 847, 1069
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 7 cut(s) 26, 131, 168, 516, 848, 971, 1070
ZrmI AGTACT 1 cut(s) 1054
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.