RchiOBHm_Chr3g0468781

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000358
Physical Location & Seq
Reverse (-)
14692164 .. 14692892
729 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43465

Sequence Viewer

Length: 729 bp
ATGTGTATGATGAGTGATGCGCATGATGGAATTGTGTCGTTCATACCTTTAGCGGATAACTTGAAGCACTTGGATTTGGGATACATTATGTTCGTTTCTGACAAAACCCTTGAAGCAATTGGGTCCTCAAGTTGTCCGATTACCGTTTTGAACTTGGAAAGCTGTCATATTACGGATTGTGGATTGAGATTTTTGACAAATGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTAAGGGGTGTCATAGAATCACTGATTCTGGGGTCTCGCTCTTGCAGAAGATGTGTGCCTTGGAGGAGCTAAATTTGGCTGATTGTCGCGAAGTCACTGACGTTGGAGGTGTGGCAATCTCCGCAATTCGAACCCTCAAGAAACTGGACTTTGCTAGGGGACCCAAAGTGACAGCTTGGGGACCCGCTTGGGGACCCAGAGTGACAGACCGCACCATTCTTGCTCTCGCCGAGAATTGCCTCAACTTGGAAATACTTGATTTGAGTGGTAATAAATTCGTGACCGGAGTTGGTATTCGTGCATTTTTGGGTCACAAGTGCTTACAATCCCTTGATCTACGCTATATTCGGGTTTATGTTAGCGGATCTGATTTGGAAGACCTAGCGCTTGCATGCCCGTCATTGAAGTCTATACTAGTAGAGGGTGGATGGAGAAAAAGATTGTTGGGTGAAATGCAAGAGAGCGCTGTTAGCAGATTCGTGAGGTTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

242

Amino Acids

26.44

Weight (kDa)

6.93

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 17 - 94 8.2e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
Acc16I TGCGCA 1 cut(s) 21
AccII CGCG 1 cut(s) 324
AciI CCGC 5 cut(s) 53, 357, 420, 445, 597
AclWI GGATC 1 cut(s) 607
AcsI RAATTY 2 cut(s) 307, 509
AfeI AGCGCT 2 cut(s) 621, 700
AfiI CCNNNNNNNGG 2 cut(s) 425, 481
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 5 cut(s) 64, 113, 151, 640, 724
AhlI ACTAGT 1 cut(s) 649
AluBI AGCT 3 cut(s) 162, 304, 410
AluI AGCT 3 cut(s) 162, 304, 410
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 607
Aor51HI AGCGCT 2 cut(s) 621, 700
ApoI RAATTY 2 cut(s) 307, 509
AspLEI GCGC 3 cut(s) 22, 622, 701
AspS9I GGNCC 5 cut(s) 123, 232, 395, 416, 428
AsuHPI GGTGA 1 cut(s) 695
AsuII TTCGAA 1 cut(s) 364
AvaII GGWCC 5 cut(s) 123, 232, 395, 416, 428
BbsI GAAGAC 1 cut(s) 618
BccI CCATC 2 cut(s) 20, 657
BciVI GTATCC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 274
BcuI ACTAGT 1 cut(s) 649
BfaI CTAG 3 cut(s) 390, 617, 650
BfoI RGCGCY 2 cut(s) 623, 702
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 74
Bme18I GGWCC 5 cut(s) 123, 232, 395, 416, 428
BmgT120I GGNCC 5 cut(s) 123, 232, 395, 416, 428
BmiI GGNNCC 7 cut(s) 124, 396, 397, 417, 418, 429, 430
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 2 cut(s) 112, 356
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 518
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 481
Bse1I ACTGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 668
BseLI CCNNNNNNNGG 2 cut(s) 425, 481
BseNI ACTGG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 324
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 3 cut(s) 408, 429, 441
BslI CCNNNNNNNGG 2 cut(s) 425, 481
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 3 cut(s) 408, 429, 441
Bso31I GGTCTC 1 cut(s) 274
Bsp119I TTCGAA 1 cut(s) 364
Bsp143I GATC 2 cut(s) 568, 599
Bsp68I TCGCGA 1 cut(s) 324
BspACI CCGC 5 cut(s) 53, 357, 420, 445, 597
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 7 cut(s) 124, 396, 397, 417, 418, 429, 430
BspPI GGATC 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 364
BspTI CTTAAG 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 568, 599
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 145
BstAFI CTTAAG 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 624, 628
BstF5I GGATG 1 cut(s) 668
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 2 cut(s) 623, 702
BstHHI GCGC 3 cut(s) 22, 622, 701
BstKTI GATC 2 cut(s) 571, 602
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 568, 599
BstMWI GCNNNNNNNGC 2 cut(s) 356, 705
BstNSI RCATGY 1 cut(s) 630
BstUI CGCG 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BsuI GTATCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 668
BtsIMutI CAGTG 2 cut(s) 255, 330
BtuMI TCGCGA 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 624, 628
CfoI GCGC 3 cut(s) 22, 622, 701
Cfr13I GGNCC 5 cut(s) 123, 232, 395, 416, 428
CviAII CATG 2 cut(s) 23, 627
CviJI RGCY 4 cut(s) 162, 304, 314, 410
CviKI_1 RGCY 4 cut(s) 162, 304, 314, 410
DpnI GATC 2 cut(s) 570, 601
DpnII GATC 2 cut(s) 568, 599
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 5 cut(s) 123, 232, 395, 416, 428
Eco47III AGCGCT 2 cut(s) 621, 700
EcoO109I RGGNCCY 4 cut(s) 123, 395, 416, 428
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 26, 630
FaqI GGGAC 3 cut(s) 408, 429, 441
FatI CATG 2 cut(s) 22, 626
FauI CCCGC 1 cut(s) 427
FokI GGATG 1 cut(s) 675
FspAI RTGCGCAY 1 cut(s) 21
FspBI CTAG 3 cut(s) 390, 617, 650
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 3 cut(s) 21, 621, 700
HaeII RGCGCY 2 cut(s) 623, 702
HapII CCGG 1 cut(s) 519
HhaI GCGC 3 cut(s) 22, 622, 701
Hin1II CATG 2 cut(s) 26, 630
Hin6I GCGC 3 cut(s) 20, 620, 699
HinP1I GCGC 3 cut(s) 20, 620, 699
HinfI GANTC 3 cut(s) 252, 260, 711
HpaII CCGG 1 cut(s) 519
HphI GGTGA 1 cut(s) 695
Hpy188I TCNGA 3 cut(s) 100, 138, 604
Hpy188III TCNNGA 4 cut(s) 323, 373, 514, 715
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 280, 536, 626, 691
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 705
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 2 cut(s) 26, 630
HspAI GCGC 3 cut(s) 20, 620, 699
KflI GGGWCCC 3 cut(s) 395, 416, 428
Kzo9I GATC 2 cut(s) 568, 599
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 4 cut(s) 249, 365, 445, 532
LweI GCATC 1 cut(s) 7
MaeI CTAG 3 cut(s) 390, 617, 650
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 5 cut(s) 328, 403, 436, 514, 545
MalI GATC 2 cut(s) 570, 601
MboI GATC 2 cut(s) 568, 599
MboII GAAGA 2 cut(s) 295, 623
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 1 cut(s) 599
MluCI AATT 8 cut(s) 30, 117, 227, 307, 360, 469, 509, 724
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 7 cut(s) 136, 292, 335, 380, 485, 649, 711
MseI TTAA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 117
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 356, 705
NdeII GATC 2 cut(s) 568, 599
NlaIII CATG 2 cut(s) 26, 630
NlaIV GGNNCC 7 cut(s) 124, 396, 397, 417, 418, 429, 430
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 5 cut(s) 328, 403, 436, 514, 545
NruI TCGCGA 1 cut(s) 324
NsbI TGCGCA 1 cut(s) 21
NspI RCATGY 1 cut(s) 630
NspV TTCGAA 1 cut(s) 364
PaeI GCATGC 1 cut(s) 630
PfeI GAWTC 3 cut(s) 252, 260, 711
PpuMI RGGWCCY 4 cut(s) 123, 395, 416, 428
Psp5II RGGWCCY 4 cut(s) 123, 395, 416, 428
PspN4I GGNNCC 7 cut(s) 124, 396, 397, 417, 418, 429, 430
PspPI GGNCC 5 cut(s) 123, 232, 395, 416, 428
PspPPI RGGWCCY 4 cut(s) 123, 395, 416, 428
PsuI RGATCY 1 cut(s) 599
RruI TCGCGA 1 cut(s) 324
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 2 cut(s) 568, 599
Sau96I GGNCC 5 cut(s) 123, 232, 395, 416, 428
SetI ASST 8 cut(s) 49, 164, 306, 339, 346, 412, 618, 722
SfaNI GCATC 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 364
SinI GGWCC 5 cut(s) 123, 232, 395, 416, 428
SmlI CTYRAG 3 cut(s) 127, 236, 371
SmoI CTYRAG 3 cut(s) 127, 236, 371
SpeI ACTAGT 1 cut(s) 649
SphI GCATGC 1 cut(s) 630
Sse9I AATT 8 cut(s) 30, 117, 227, 307, 360, 469, 509, 724
SsiI CCGC 5 cut(s) 53, 357, 420, 445, 597
SspMI CTAG 3 cut(s) 390, 617, 650
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 364
TasI AATT 8 cut(s) 30, 117, 227, 307, 360, 469, 509, 724
TfiI GAWTC 3 cut(s) 252, 260, 711
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 262, 337
TseFI GTSAC 5 cut(s) 328, 403, 436, 514, 545
Tsp45I GTSAC 5 cut(s) 328, 403, 436, 514, 545
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 262, 337
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 5 cut(s) 123, 232, 395, 416, 428
XapI RAATTY 2 cut(s) 307, 509
XceI RCATGY 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XspI CTAG 3 cut(s) 390, 617, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.