FvH4_3g30491

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000358
Physical Location & Seq
Forward (+)
23777323 .. 23777781
459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30491.t1

Sequence Viewer

Length: 375 bp
ATGGAAAATGAAAAATGGATCCCTGCTAATGTTGATGAAGCTGATGTTGATGAAGCATGGAAGAAATTATCGACGGTTCAACTAGTTGGAGACGAAGATTTGTTTGCTTTAGCAAATCATAAGTTGACTCATTTGGATTTGGACCAGTGTATTTTGGTTTCAGACCAAGCCCTTGAAATAATTGGGTCATCTCGTTGTCTCATTCATATTTTGAGTGTGAGAGGTTTCTCCATTACTGACGTCGGATTGAATGTTTTGGCAAATGGGCGTTGCTCAGAAATCATCAAGCAATTGAACCTTTTCTCACTTTTATGTAAAGATGCGTGTTGTGGCGAAAACCTCATTTGCCTTAAAATGGCATTATTGGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

125

Amino Acids

13.61

Weight (kDa)

4.65

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
AclWI GGATC 2 cut(s) 13, 26
AcyI GRCGYC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 4 cut(s) 80, 176, 250, 295
AhlI ACTAGT 1 cut(s) 82
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 84, 203
AlwI GGATC 2 cut(s) 13, 26
ApeKI GCWGC 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 84, 203
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 20
BmsI GCATC 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 2 cut(s) 84, 203
BsmBI CGTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 13, 26
BsrI ACTGG 1 cut(s) 145
BssMI GATC 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 274
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 2 cut(s) 84, 203
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 1 cut(s) 57
CviJI RGCY 2 cut(s) 41, 170
CviKI_1 RGCY 2 cut(s) 41, 170
DdeI CTNAG 1 cut(s) 274
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 1 cut(s) 60
FaiI YATR 5 cut(s) 58, 120, 207, 313, 373
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 369
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 60
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 163, 245, 277
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 2 cut(s) 76, 245
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 274
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 60
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 2 cut(s) 36, 158
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 73, 107
MfeI CAATTG 1 cut(s) 290
MflI RGATCY 1 cut(s) 18
MluCI AATT 3 cut(s) 65, 180, 290
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 67, 223
MnlI CCTC 2 cut(s) 215, 350
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 310
MunI CAATTG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 1 cut(s) 18
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 310
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 121
SetI ASST 5 cut(s) 43, 226, 243, 300, 342
SfaNI GCATC 1 cut(s) 310
SgeI CNNG 9 cut(s) 35, 69, 95, 157, 179, 185, 204, 298, 336
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 82
Sse9I AATT 3 cut(s) 65, 180, 290
SspMI CTAG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 71
TasI AATT 3 cut(s) 65, 180, 290
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 152
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 4 cut(s) 24, 51, 66, 194
TspRI CASTG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 83
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.