FvH4_2g32540

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Reverse (-)
24638225 .. 24639614
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32540.t1

Sequence Viewer

Length: 999 bp
ATGGTGGAGATTTCACAACTGAATGACGATCTATTAGGTCAGATCCTGAAACGGGTCAACGACCCGGATGATCGGAAACGGTTCTCCCAAGTCTGCAAACAATGGTCGACAGTCGAAGGTCTAACCATAACGTCACTCACTTTATTCCGACTCAGTAGTATCCGTCAGGTACTGCCTCGATTCCCTAATCTAGTTACATTCCGCACATCCCAGCCTATCTCCGAGGAAGCGGATCTCGAGTTCATAGCCCAAACATGTCCCAAACTGGAGGCCATCAATCTCAGCACCACAGATTTCGAATCAAGTTTGTTACCGAAAAACGGTCTTTACGGTCTGTCAAGTGGTGGCGGCCTTTTGAAATTGTCCAAGGTTTTGATCAGAGGGAGAGAGAATGTAGGCATTCATAGATGGCTACCTAAGTTGGCACATGAGAACTTGACTTATTTGGATTTGGGAAGGTGCAGCTTGGTCGATGACAAAGCGTTGAAAGCAATTGGGCTACTGTGCCCTTGTTTGAGCTATTTGAATTTAGAAGTTTCCGATGTTTCGGACAAGGGTTTGAGATTGTTGGCACATGCAAGGTGCTCAAAAACCCTTAAGACATTGGTGCTTGCTCAATGCTATTATATAACCGACTCCGGGGTCTCATATTTGCAGAGTATGCAATGCTTGGAAGAGCTGGATTTGGAAAACTGCGGGGAGCACGACACCGAAGTCTCTGATATTGGAGTTAGAGCTGCAATCTCTGGAAATCGATCTCTCAAGAAGTTGAACTTGAGTTGGTTGATAAATGTGTCGGACCAAATCATGGTGTTTGTTTCTGAAAATTGCCCCAACTTAGAGTTTCTTGATGTAAGTCATTCTAGTGTAACTGTTGCCGGAATTCGTGCGCTTTCCGGTCACAGGTGCCTAGAGTCTCTTGTTTGGCGCACTGATCGTGAATATTTTTGGTGGCCCGATATAGATGCAAGTCACTCAAGTCTAGATCTATCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

333

Amino Acids

37.11

Weight (kDa)

5.57

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 37 7.6e-06 F-box domain
F-box_5 PF18511 6 - 42 1e-06 F-box
DUF7885 PF25372 144 - 220 6.5e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 641, 713
AccB1I GGYRCC 1 cut(s) 906
AccB7I CCANNNNNTGG 1 cut(s) 808
AccI GTMKAC 1 cut(s) 107
AciI CCGC 4 cut(s) 202, 230, 348, 696
AclWI GGATC 2 cut(s) 37, 240
AcsI RAATTY 2 cut(s) 526, 882
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 5 cut(s) 52, 320, 639, 808, 903
AflII CTTAAG 1 cut(s) 596
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 4 cut(s) 358, 487, 526, 772
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 4 cut(s) 465, 519, 679, 737
AluI AGCT 4 cut(s) 465, 519, 679, 737
Alw21I GWGCWC 2 cut(s) 587, 705
Alw26I GTCTC 3 cut(s) 649, 721, 921
AlwI GGATC 2 cut(s) 37, 240
AlwNI CAGNNNCTG 2 cut(s) 46, 172
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 270, 349, 953
ApeKI GCWGC 2 cut(s) 462, 737
ApoI RAATTY 2 cut(s) 526, 882
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 892, 930
AspS9I GGNCC 2 cut(s) 799, 954
AsuC2I CCSGG 2 cut(s) 65, 640
AsuII TTCGAA 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 799
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 1 cut(s) 906
Bbv12I GWGCWC 2 cut(s) 587, 705
BbvI GCAGC 2 cut(s) 474, 724
BccI CCATC 2 cut(s) 281, 402
BcgI CGANNNNNNTGC 4 cut(s) 451, 485, 947, 981
BciVI GTATCC 1 cut(s) 170
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 2 cut(s) 65, 640
BcoDI GTCTC 3 cut(s) 649, 721, 921
BfaI CTAG 4 cut(s) 191, 864, 911, 983
BfrI CTTAAG 1 cut(s) 596
BfuI GTATCC 1 cut(s) 170
BglII AGATCT 1 cut(s) 985
BisI GCNGC 3 cut(s) 349, 463, 738
BlsI GCNGC 3 cut(s) 350, 464, 739
Bme1390I CCNGG 2 cut(s) 65, 640
Bme18I GGWCC 1 cut(s) 799
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 799, 954
BmiI GGNNCC 1 cut(s) 908
BmrFI CCNGG 2 cut(s) 65, 640
BmsI GCATC 1 cut(s) 955
BpmI CTGGAG 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 297
BpuEI CTTGAG 3 cut(s) 746, 796, 961
BpuMI CCSGG 2 cut(s) 65, 640
Bsa29I ATCGAT 1 cut(s) 754
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 3 cut(s) 222, 366, 639
BsaWI WCCGGW 1 cut(s) 896
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 320, 639, 808, 903
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 671
BseCI ATCGAT 1 cut(s) 754
BseDI CCNNGG 3 cut(s) 222, 366, 639
BseGI GGATG 3 cut(s) 73, 206, 992
BseLI CCNNNNNNNGG 5 cut(s) 52, 320, 639, 808, 903
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 2 cut(s) 166, 295
BseNI ACTGG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 2 cut(s) 474, 724
BseYI CCCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 3 cut(s) 272, 351, 955
BshNI GGYRCC 1 cut(s) 906
BshVI ATCGAT 1 cut(s) 754
BsiHKAI GWGCWC 2 cut(s) 587, 705
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 65, 639, 879, 897
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 5 cut(s) 52, 320, 639, 808, 903
BsmAI GTCTC 3 cut(s) 649, 721, 921
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 3 cut(s) 272, 351, 955
Bso31I GGTCTC 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 297
Bsp1286I GDGCHC 3 cut(s) 509, 587, 705
Bsp143I GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
BspACI CCGC 4 cut(s) 202, 230, 348, 696
BspANI GGCC 3 cut(s) 272, 351, 955
BspCNI CTCAG 2 cut(s) 165, 294
BspDI ATCGAT 1 cut(s) 754
BspLI GGNNCC 1 cut(s) 908
BspPI GGATC 2 cut(s) 37, 240
BspQI GCTCTTC 1 cut(s) 669
BspT104I TTCGAA 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 906
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 671
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 3 cut(s) 222, 366, 639
BssMI GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 6 cut(s) 81, 112, 323, 332, 504, 874
Bst6I CTCTTC 1 cut(s) 669
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 661
BstBI TTCGAA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 4 cut(s) 152, 281, 417, 838
BstF5I GGATG 3 cut(s) 73, 206, 992
BstHHI GCGC 2 cut(s) 892, 930
BstKTI GATC 8 cut(s) 31, 45, 73, 235, 378, 758, 937, 988
BstMAI GTCTC 3 cut(s) 649, 721, 921
BstMBI GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
BstMWI GCNNNNNNNGC 2 cut(s) 488, 661
BstNSI RCATGY 2 cut(s) 258, 578
BstSCI CCNGG 2 cut(s) 63, 638
BstSLI GKGCMC 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 474, 724
BstX2I RGATCY 3 cut(s) 42, 232, 985
BstYI RGATCY 3 cut(s) 42, 232, 985
Bsu15I ATCGAT 1 cut(s) 754
BsuI GTATCC 1 cut(s) 170
BsuRI GGCC 3 cut(s) 272, 351, 955
BsuTUI ATCGAT 1 cut(s) 754
BtsCI GGATG 3 cut(s) 73, 206, 992
BtsIMutI CAGTG 1 cut(s) 930
Cac8I GCNNGC 1 cut(s) 612
CaiI CAGNNNCTG 2 cut(s) 46, 172
CfoI GCGC 2 cut(s) 892, 930
Cfr13I GGNCC 2 cut(s) 799, 954
ClaI ATCGAT 1 cut(s) 754
Csp6I GTAC 1 cut(s) 170
CviAII CATG 4 cut(s) 255, 428, 575, 808
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 4 cut(s) 152, 281, 417, 838
DpnI GATC 8 cut(s) 30, 44, 72, 234, 377, 757, 936, 987
DpnII GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
DrdI GACNNNNNNGTC 2 cut(s) 641, 713
DseDI GACNNNNNNGTC 2 cut(s) 641, 713
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 799
Eco88I CYCGRG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 882
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 4 cut(s) 258, 431, 578, 811
FalI AAGNNNNNCTT 2 cut(s) 758, 790
FaqI GGGAC 1 cut(s) 243
FatI CATG 4 cut(s) 254, 427, 574, 807
FauI CCCGC 1 cut(s) 689
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 349, 463, 738
FokI GGATG 3 cut(s) 80, 193, 979
Fsp4HI GCNGC 3 cut(s) 349, 463, 738
FspBI CTAG 4 cut(s) 191, 864, 911, 983
GlaI GCGC 2 cut(s) 891, 929
GluI GCNGC 3 cut(s) 349, 463, 738
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 3 cut(s) 272, 351, 955
HapII CCGG 4 cut(s) 65, 639, 879, 897
HhaI GCGC 2 cut(s) 892, 930
Hin1II CATG 4 cut(s) 258, 431, 578, 811
Hin6I GCGC 2 cut(s) 890, 928
HinP1I GCGC 2 cut(s) 890, 928
HincII GTYRAC 2 cut(s) 58, 108
HindII GTYRAC 2 cut(s) 58, 108
HinfI GANTC 5 cut(s) 150, 180, 299, 635, 914
HpaII CCGG 4 cut(s) 65, 639, 879, 897
Hpy166II GTNNAC 2 cut(s) 58, 108
Hpy188III TCNNGA 8 cut(s) 46, 236, 747, 763, 848, 938, 983, 996
Hpy8I GTNNAC 2 cut(s) 58, 108
HpyAV CCTTC 2 cut(s) 110, 450
HpyCH4III ACNGT 6 cut(s) 81, 112, 323, 332, 504, 874
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 7 cut(s) 96, 462, 578, 655, 664, 740, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 661
HpyF3I CTNAG 4 cut(s) 152, 281, 417, 838
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 4 cut(s) 258, 431, 578, 811
HspAI GCGC 2 cut(s) 890, 928
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 2 cut(s) 474, 724
LweI GCATC 1 cut(s) 955
MaeI CTAG 4 cut(s) 191, 864, 911, 983
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 6 cut(s) 132, 193, 309, 868, 899, 971
MalI GATC 8 cut(s) 30, 44, 72, 234, 377, 757, 936, 987
MboI GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
MboII GAAGA 1 cut(s) 686
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 3 cut(s) 42, 232, 985
MhlI GDGCHC 3 cut(s) 509, 587, 705
MluCI AATT 5 cut(s) 359, 492, 526, 826, 882
MlyI GAGTC 3 cut(s) 144, 629, 923
MmeI TCCRAC 2 cut(s) 172, 777
MnlI CCTC 4 cut(s) 186, 217, 262, 374
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 1 cut(s) 864
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 4 cut(s) 65, 639, 879, 897
MspR9I CCNGG 2 cut(s) 65, 640
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 488, 661
NciI CCSGG 2 cut(s) 65, 640
NdeII GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
NlaIII CATG 4 cut(s) 258, 431, 578, 811
NlaIV GGNNCC 1 cut(s) 908
NmuCI GTSAC 3 cut(s) 132, 899, 971
NspI RCATGY 2 cut(s) 258, 578
NspV TTCGAA 1 cut(s) 297
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 669
PctI GAATGC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 180, 299
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 3 cut(s) 350, 464, 739
PleI GAGTC 3 cut(s) 144, 629, 922
PpsI GAGTC 3 cut(s) 144, 629, 922
PscI ACATGT 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 908
PspPI GGNCC 2 cut(s) 799, 954
PstNI CAGNNNCTG 2 cut(s) 46, 172
PsuI RGATCY 3 cut(s) 42, 232, 985
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 864
SalI GTCGAC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 3 cut(s) 349, 463, 738
Sau3AI GATC 8 cut(s) 28, 42, 70, 232, 375, 755, 934, 985
Sau96I GGNCC 2 cut(s) 799, 954
SchI GAGTC 3 cut(s) 144, 629, 923
ScrFI CCNGG 2 cut(s) 65, 640
SduI GDGCHC 3 cut(s) 509, 587, 705
SfaNI GCATC 1 cut(s) 955
Sfr274I CTCGAG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 297
SinI GGWCC 1 cut(s) 799
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 5 cut(s) 236, 596, 761, 775, 976
SmoI CTYRAG 5 cut(s) 236, 596, 761, 775, 976
Sse9I AATT 5 cut(s) 359, 492, 526, 826, 882
SsiI CCGC 4 cut(s) 202, 230, 348, 696
SspI AATATT 1 cut(s) 944
SspMI CTAG 4 cut(s) 191, 864, 911, 983
StyD4I CCNGG 2 cut(s) 63, 638
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 6 cut(s) 81, 112, 323, 332, 504, 874
TaiI ACGT 1 cut(s) 134
TaqI TCGA 7 cut(s) 107, 114, 178, 237, 297, 471, 754
TasI AATT 5 cut(s) 359, 492, 526, 826, 882
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 2 cut(s) 180, 299
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 1 cut(s) 937
TseFI GTSAC 3 cut(s) 132, 899, 971
TseI GCWGC 2 cut(s) 462, 737
Tsp45I GTSAC 3 cut(s) 132, 899, 971
TspDTI ATGAA 2 cut(s) 232, 392
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 937
Van91I CCANNNNNTGG 1 cut(s) 808
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 799
XapI RAATTY 2 cut(s) 526, 882
XbaI TCTAGA 1 cut(s) 982
XceI RCATGY 2 cut(s) 258, 578
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 4 cut(s) 191, 864, 911, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.