MD15G1093400.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000358
Physical Location & Seq
Forward (+)
6466894 .. 6468120
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1093400.v1.1.491

Sequence Viewer

Length: 1227 bp
ATGTCTCAGCTAGGCGATGACGAACTAACCCTAATCCTCAATTGGGTCACCGACCCAAAAGACAGACAATCGTTCTCCGAGGTCTGCAAGCAATGGCTGAGAGTGGAGGGCCTGAACCGATCCTCAATTCGTCTTCTCGAACCCGAACATCTCCTCCGAGTCCTACCCAGATTCCCAAATTTACTCCAATTCGAAGCATCAAAGTCCATCGCCGACTCCGACCTCGAACTCATAGCTCGATTCTGTCCCAAAATCGAAGTCATCGACCTCAATTCGAAAACCCCACGTAAGATTTCTGACAAATTTGACGAAGCATTGTTGTTTGATGATTTTGGGAACGACGGTCTGTGCGCTCTGGCACAAGGGTGTCCGAAATTGCGTAAGGTTTCGATCAGAAGGAGGAAGAATGTTGGGAATTTTGGGATCGTTTCGCTTGTGGATTTATCGCATAATTTGACGTATTTGGATTTAGGGTTTTGCAGCTTGGTTTCGGACCCAACCCTAGATGCAATTGGGTCTTCAAATTCGATTATGGTTTTGGGTTTGCAAGGATGTTCGTTGATTACGGATCGCGGGTTAAAGTTTTTGGCAAATGGGTCTTGCTCAAAAACCATGAAAAGGTTGAATCTTGCAGGGTGTGATAGAATCACTGATTTTGGGGTCTCCAATTTGCAGAATATGTGTGGCTTGGTGGAGCTGAATTTGGCGGAATGTGGTCCGAAAATCACTGACTCCGGAGTTGTTTCAATTGCTGCAATTCGATCTCTTAAAAGATTGAACCTGTCTTGGTTGATCAATGTGACAAATCAGACAGTTGTTGCTCTTGCTGAGAATTGCCGGAAGTTGGAGATGCTGGATTTAACCGGTTGTGAATTGGTAAGCGGTGAGGGCATTCTTGCATTTTCGAGTCATGTGTGCTTAGAGACAATTGTTTTCTGTTCTTGCTTCAATGTCAGTGTGTGTGACATTGAAAACTTAGTTCTTCGATGCTCGTCATTGAAGTGCATTGTGCTGGATAAAGGACTGAGAACGTGGATGCAAGAAAGGATTGGCTTTAGTTTGGCGTTGAGAAATGGATGCAGCTTACATCTCTTCTGCTCCTGTGCTCCATGTGTTTGGAAACCTTGCTTATTGACTGTTTGGTGTAAAAGGTTAAGAGAGCTTCTTCGTCATAGTAGAAGTGTTTTTTTGGGAGAAGCACCTGTCAGGTACACTTATTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

409

Amino Acids

45.41

Weight (kDa)

8.12

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 3 - 41 1.1e-08 F-box
DUF7885 PF25372 114 - 316 1.2e-16 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 573
AccIII TCCGGA 1 cut(s) 734
AciI CCGC 3 cut(s) 573, 707, 882
AclWI GGATC 3 cut(s) 114, 431, 576
AcsI RAATTY 5 cut(s) 178, 302, 415, 523, 700
AfaI GTAC 1 cut(s) 1211
AfiI CCNNNNNNNGG 3 cut(s) 43, 618, 844
AgeI ACCGGT 1 cut(s) 863
AgsI TTSAA 7 cut(s) 522, 625, 747, 778, 949, 971, 1000
AleI CACNNNNGTG 1 cut(s) 364
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 6 cut(s) 10, 236, 483, 697, 1083, 1162
AluI AGCT 6 cut(s) 10, 236, 483, 697, 1083, 1162
Alw21I GWGCWC 1 cut(s) 1108
Alw26I GTCTC 3 cut(s) 9, 667, 917
AlwI GGATC 3 cut(s) 114, 431, 576
Aor13HI TCCGGA 1 cut(s) 734
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 3 cut(s) 480, 752, 1080
ApoI RAATTY 5 cut(s) 178, 302, 415, 523, 700
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AsiGI ACCGGT 1 cut(s) 863
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 109, 493, 716
AsuHPI GGTGA 2 cut(s) 40, 896
AsuII TTCGAA 2 cut(s) 192, 275
AvaII GGWCC 2 cut(s) 493, 716
BbsI GAAGAC 2 cut(s) 125, 510
Bbv12I GWGCWC 1 cut(s) 1108
BbvI GCAGC 3 cut(s) 492, 739, 1092
BccI CCATC 1 cut(s) 215
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 3 cut(s) 9, 667, 917
BfaI CTAG 2 cut(s) 11, 503
BisI GCNGC 3 cut(s) 481, 753, 1081
BlsI GCNGC 3 cut(s) 482, 754, 1082
Bme18I GGWCC 2 cut(s) 493, 716
BmgT120I GGNCC 3 cut(s) 109, 493, 716
BmiI GGNNCC 1 cut(s) 495
BmsI GCATC 6 cut(s) 206, 496, 840, 977, 1026, 1067
BpiI GAAGAC 2 cut(s) 125, 510
Bpu14I TTCGAA 2 cut(s) 192, 275
BsaAI YACGTR 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 2 cut(s) 734, 863
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 618, 844
Bse118I RCCGGY 1 cut(s) 863
Bse3DI GCAATG 1 cut(s) 98
BseAI TCCGGA 1 cut(s) 734
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 3 cut(s) 557, 1041, 1082
BseLI CCNNNNNNNGG 3 cut(s) 43, 618, 844
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 4 cut(s) 20, 89, 819, 1016
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 492, 739, 1092
Bsh1236I CGCG 1 cut(s) 573
BshFI GGCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 863
BsiHKAI GWGCWC 1 cut(s) 1108
BsiSI CCGG 3 cut(s) 735, 838, 864
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 43, 618, 844
BsmAI GTCTC 3 cut(s) 9, 667, 917
BsmFI GGGAC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 891
BsnI GGCC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 667
Bsp119I TTCGAA 2 cut(s) 192, 275
Bsp1286I GDGCHC 1 cut(s) 1108
Bsp13I TCCGGA 1 cut(s) 734
Bsp143I GATC 6 cut(s) 119, 390, 423, 568, 761, 792
BspACI CCGC 3 cut(s) 573, 707, 882
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 4 cut(s) 19, 90, 820, 1017
BspEI TCCGGA 1 cut(s) 734
BspFNI CGCG 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 3 cut(s) 114, 431, 576
BspT104I TTCGAA 2 cut(s) 192, 275
BspTNI GGTCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 863
BssAI RCCGGY 1 cut(s) 863
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 6 cut(s) 119, 390, 423, 568, 761, 792
Bst4CI ACNGT 3 cut(s) 344, 814, 1138
Bst6I CTCTTC 1 cut(s) 1097
BstBAI YACGTR 1 cut(s) 287
BstBI TTCGAA 2 cut(s) 192, 275
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 6 cut(s) 6, 98, 828, 919, 976, 1025
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 3 cut(s) 557, 1041, 1082
BstFNI CGCG 1 cut(s) 573
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 6 cut(s) 122, 393, 426, 571, 764, 795
BstMAI GTCTC 3 cut(s) 9, 667, 917
BstMBI GATC 6 cut(s) 119, 390, 423, 568, 761, 792
BstMWI GCNNNNNNNGC 1 cut(s) 888
BstPI GGTNACC 1 cut(s) 46
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 3 cut(s) 492, 739, 1092
BstV2I GAAGAC 2 cut(s) 125, 510
BstXI CCANNNNNNTGG 1 cut(s) 1116
BsuRI GGCC 1 cut(s) 111
BtgZI GCGATG 2 cut(s) 30, 193
BtsCI GGATG 3 cut(s) 557, 1041, 1082
BtsIMutI CAGTG 3 cut(s) 648, 726, 961
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 863
Cfr13I GGNCC 3 cut(s) 109, 493, 716
Csp6I GTAC 1 cut(s) 1210
CspAI ACCGGT 1 cut(s) 863
CviAII CATG 3 cut(s) 613, 911, 1110
CviQI GTAC 1 cut(s) 1210
DdeI CTNAG 6 cut(s) 6, 98, 828, 919, 976, 1025
DpnI GATC 6 cut(s) 121, 392, 425, 570, 763, 794
DpnII GATC 6 cut(s) 119, 390, 423, 568, 761, 792
Eam1104I CTCTTC 1 cut(s) 1097
EarI CTCTTC 1 cut(s) 1097
EciI GGCGGA 1 cut(s) 722
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 2 cut(s) 493, 716
Eco91I GGTNACC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 46
FaeI CATG 3 cut(s) 616, 914, 1113
FaiI YATR 9 cut(s) 233, 450, 533, 614, 680, 912, 1111, 1173, 1225
FaqI GGGAC 1 cut(s) 231
FatI CATG 3 cut(s) 612, 910, 1109
FauI CCCGC 1 cut(s) 566
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 3 cut(s) 481, 753, 1081
FokI GGATG 3 cut(s) 564, 1048, 1089
Fsp4HI GCNGC 3 cut(s) 481, 753, 1081
FspBI CTAG 2 cut(s) 11, 503
GlaI GCGC 1 cut(s) 352
GluI GCNGC 3 cut(s) 481, 753, 1081
HaeIII GGCC 1 cut(s) 111
HapII CCGG 3 cut(s) 735, 838, 864
HhaI GCGC 1 cut(s) 353
Hin1II CATG 3 cut(s) 616, 914, 1113
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 8 cut(s) 159, 171, 215, 240, 625, 645, 731, 907
HpaII CCGG 3 cut(s) 735, 838, 864
HphI GGTGA 2 cut(s) 40, 896
Hpy166II GTNNAC 1 cut(s) 1212
Hpy188I TCNGA 9 cut(s) 79, 158, 220, 298, 372, 395, 493, 720, 810
Hpy188III TCNNGA 2 cut(s) 137, 735
Hpy8I GTNNAC 1 cut(s) 1212
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 3 cut(s) 344, 814, 1138
HpyCH4IV ACGT 3 cut(s) 286, 458, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 888
HpyF3I CTNAG 6 cut(s) 6, 98, 828, 919, 976, 1025
HpySE526I ACGT 3 cut(s) 286, 458, 1031
Hsp92II CATG 3 cut(s) 616, 914, 1113
HspAI GCGC 1 cut(s) 351
Kpn2I TCCGGA 1 cut(s) 734
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 6 cut(s) 119, 390, 423, 568, 761, 792
LmnI GCTCC 3 cut(s) 694, 1103, 1111
Lsp1109I GCAGC 3 cut(s) 492, 739, 1092
LweI GCATC 6 cut(s) 206, 496, 840, 977, 1026, 1067
MaeI CTAG 2 cut(s) 11, 503
MaeII ACGT 3 cut(s) 286, 458, 1031
MaeIII GTNAC 3 cut(s) 46, 799, 962
MalI GATC 6 cut(s) 121, 392, 425, 570, 763, 794
MboI GATC 6 cut(s) 119, 390, 423, 568, 761, 792
MboII GAAGA 6 cut(s) 125, 415, 510, 974, 1084, 1157
MfeI CAATTG 4 cut(s) 40, 510, 747, 927
MhlI GDGCHC 1 cut(s) 1108
MlyI GAGTC 4 cut(s) 168, 209, 725, 916
MmeI TCCRAC 2 cut(s) 243, 825
MnlI CCTC 9 cut(s) 47, 73, 100, 133, 164, 233, 278, 393, 880
MroI TCCGGA 1 cut(s) 734
MseI TTAA 4 cut(s) 578, 768, 860, 1154
MslI CAYNNNNRTG 2 cut(s) 364, 1000
MspI CCGG 3 cut(s) 735, 838, 864
MunI CAATTG 4 cut(s) 40, 510, 747, 927
Mva1269I GAATGC 1 cut(s) 891
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 1 cut(s) 888
NdeII GATC 6 cut(s) 119, 390, 423, 568, 761, 792
NlaIII CATG 3 cut(s) 616, 914, 1113
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 3 cut(s) 46, 799, 962
NspV TTCGAA 2 cut(s) 192, 275
OliI CACNNNNGTG 1 cut(s) 364
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 261
PctI GAATGC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 171, 240, 625, 645
PinAI ACCGGT 1 cut(s) 863
PkrI GCNGC 3 cut(s) 482, 754, 1082
PleI GAGTC 4 cut(s) 167, 209, 725, 915
PpsI GAGTC 4 cut(s) 167, 209, 725, 915
Ppu21I YACGTR 1 cut(s) 287
PspEI GGTNACC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 3 cut(s) 109, 493, 716
RsaI GTAC 1 cut(s) 1211
RsaNI GTAC 1 cut(s) 1210
RseI CAYNNNNRTG 2 cut(s) 364, 1000
SaqAI TTAA 4 cut(s) 578, 768, 860, 1154
SatI GCNGC 3 cut(s) 481, 753, 1081
Sau3AI GATC 6 cut(s) 119, 390, 423, 568, 761, 792
Sau96I GGNCC 3 cut(s) 109, 493, 716
SchI GAGTC 4 cut(s) 168, 209, 725, 916
SduI GDGCHC 1 cut(s) 1108
SfaNI GCATC 6 cut(s) 206, 496, 840, 977, 1026, 1067
SfuI TTCGAA 2 cut(s) 192, 275
SinI GGWCC 2 cut(s) 493, 716
SmiMI CAYNNNNRTG 2 cut(s) 364, 1000
SsiI CCGC 3 cut(s) 573, 707, 882
SspMI CTAG 2 cut(s) 11, 503
TaaI ACNGT 3 cut(s) 344, 814, 1138
TaiI ACGT 3 cut(s) 289, 461, 1034
TfiI GAWTC 4 cut(s) 171, 240, 625, 645
Tru1I TTAA 4 cut(s) 578, 768, 860, 1154
Tru9I TTAA 4 cut(s) 578, 768, 860, 1154
TscAI CASTG 3 cut(s) 655, 733, 961
TseFI GTSAC 3 cut(s) 46, 799, 962
TseI GCWGC 3 cut(s) 480, 752, 1080
Tsp45I GTSAC 3 cut(s) 46, 799, 962
TspDTI ATGAA 1 cut(s) 629
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 3 cut(s) 655, 733, 961
VpaK11BI GGWCC 2 cut(s) 493, 716
XapI RAATTY 5 cut(s) 178, 302, 415, 523, 700
XspI CTAG 2 cut(s) 11, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.