RLG00000010811

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000358
Physical Location & Seq
Forward (+)
4493540 .. 4494652
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010811

Sequence Viewer

Length: 930 bp
ATGAACGTGTTAGGTGATGACGAACTGGGCCTAATCCTGAACCGGATTACCGACCCTGATGATAGAAAATCGGCCTCTCTAGTCTCCAAGCGATGCAACGCCAACCTAGTACTGTTGGCACAAACATGTCCCAAACTTGAGGTGATCGACCTTACTACTGTGTCGATCCGTAGACAAGTTGGGGACGAAGGCCTGTGCGCATTGGCAAGTGGGTGTCCCGAATTATTCGTGGTTCTGCTTCGCGAGAGACATAATGTTGGGGAGGTTGGACTTGTGTCCCTCATTACTTCAGCAGCACATAATTTGACGCATTTAGATTTGGGGTTTTGTTCCTCGGTTTGTGACAATGTGGTTGGAGCAATTGGGTCCTCCAGTTGCTCGATTAGCGTTTTGAATTTGGGAAACTGCAAGTTGATCACCGATGCCGGATTGCGGTTTTTGGAAAATGGGTGTTGCTCGAAAACCATGAAGACATTGATCCTTACCGGGTGCGCTAGAATCACTGATTCCGGAGTCTCACTTTTGCACAAGATGTCTGTTTTGGAGGAGCTGAATTTGGAAGAATGTAGTCTACGCATCACTGACGTTGGAGGTGTGGCAATCTCCGCAATTCCAACCCTCAAGAAAGTGCAATTGGGTTCGCTCTACTCTGTGACAGACAACACAATTGTTGCTCTTGCTAAGAATTGCCTCAATTTGGAGCTGCTCGAACTGAGAGGTTGTAAGGTGACTGGAGCTGGGTCTGATTTAGAACGTTTGGCGCGAAAATGCCCGGCATTGAAGTCTATTGTGGTGGATGAAAGATTGAGGAATAGGATGTGGCGTGTAATGCGAGATGGCACTATTAGCAAATTCCTGGAGTTCCCTTCATTTAGTGGTGAAAACCTTGGATTTCCTTCTTCTCTTTCATCGGCTAAGCAACTTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

310

Amino Acids

33.12

Weight (kDa)

6.87

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 39 - 147 1.8e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 97 - 177 8.1e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 199
AccI GTMKAC 2 cut(s) 172, 571
AccII CGCG 2 cut(s) 243, 763
AccIII TCCGGA 1 cut(s) 509
AciI CCGC 2 cut(s) 433, 606
AclI AACGTT 1 cut(s) 754
AclWI GGATC 2 cut(s) 160, 472
AcsI RAATTY 3 cut(s) 394, 553, 851
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 432, 697
AflIII ACRYGT 2 cut(s) 6, 125
AgsI TTSAA 2 cut(s) 394, 781
AjnI CCWGG 1 cut(s) 855
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 3 cut(s) 550, 703, 737
AluI AGCT 3 cut(s) 550, 703, 737
Alw26I GTCTC 3 cut(s) 88, 241, 520
AlwI GGATC 2 cut(s) 160, 472
Aor13HI TCCGGA 1 cut(s) 509
AoxI GGCC 3 cut(s) 28, 72, 190
ApeKI GCWGC 2 cut(s) 293, 703
ApoI RAATTY 3 cut(s) 394, 553, 851
AspLEI GCGC 3 cut(s) 200, 494, 763
AspS9I GGNCC 2 cut(s) 28, 366
AsuC2I CCSGG 2 cut(s) 487, 773
AsuHPI GGTGA 5 cut(s) 26, 154, 409, 739, 890
AvaII GGWCC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 305, 690
BccI CCATC 1 cut(s) 830
BciT130I CCWGG 1 cut(s) 857
BclI TGATCA 1 cut(s) 414
BcnI CCSGG 2 cut(s) 487, 773
BcoDI GTCTC 3 cut(s) 88, 241, 520
BfaI CTAG 3 cut(s) 80, 107, 495
BisI GCNGC 2 cut(s) 294, 704
BlpI GCTNAGC 1 cut(s) 915
BlsI GCNGC 2 cut(s) 295, 705
BmcAI AGTACT 1 cut(s) 111
Bme1390I CCNGG 3 cut(s) 487, 773, 857
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 28, 366
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 3 cut(s) 487, 773, 857
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 3 cut(s) 83, 412, 585
BmuI ACTGGG 1 cut(s) 35
BoxI GACNNNNGTC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 3 cut(s) 355, 753, 878
Bpu1102I GCTNAGC 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 158, 605
BpuMI CCSGG 2 cut(s) 487, 773
BsaJI CCNNGG 2 cut(s) 333, 886
BsaWI WCCGGW 2 cut(s) 42, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 432, 697
Bse1I ACTGG 3 cut(s) 30, 372, 736
BseAI TCCGGA 1 cut(s) 509
BseBI CCWGG 1 cut(s) 857
BseDI CCNNGG 2 cut(s) 333, 886
BseGI GGATG 2 cut(s) 802, 822
BseLI CCNNNNNNNGG 2 cut(s) 432, 697
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 3 cut(s) 30, 372, 736
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 2 cut(s) 305, 690
BseYI CCCAGC 1 cut(s) 737
Bsh1236I CGCG 2 cut(s) 243, 763
BshFI GGCC 3 cut(s) 30, 74, 192
BsiSI CCGG 5 cut(s) 43, 426, 486, 510, 773
BslFI GGGAC 4 cut(s) 114, 197, 201, 262
BslI CCNNNNNNNGG 2 cut(s) 432, 697
BsmAI GTCTC 3 cut(s) 88, 241, 520
BsmFI GGGAC 4 cut(s) 114, 197, 201, 262
BsnI GGCC 3 cut(s) 30, 74, 192
Bsp13I TCCGGA 1 cut(s) 509
Bsp143I GATC 4 cut(s) 144, 165, 414, 477
Bsp1720I GCTNAGC 1 cut(s) 915
Bsp68I TCGCGA 1 cut(s) 243
BspACI CCGC 2 cut(s) 433, 606
BspANI GGCC 3 cut(s) 30, 74, 192
BspCNI CTCAG 1 cut(s) 705
BspEI TCCGGA 1 cut(s) 509
BspFNI CGCG 2 cut(s) 243, 763
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 160, 472
BsrI ACTGG 3 cut(s) 30, 372, 736
BssECI CCNNGG 2 cut(s) 333, 886
BssMI GATC 4 cut(s) 144, 165, 414, 477
BssT1I CCWWGG 1 cut(s) 886
Bst2UI CCWGG 1 cut(s) 857
Bst4CI ACNGT 2 cut(s) 114, 160
BstDEI CTNAG 3 cut(s) 681, 713, 915
BstF5I GGATG 2 cut(s) 802, 822
BstFNI CGCG 2 cut(s) 243, 763
BstHHI GCGC 3 cut(s) 200, 494, 763
BstKTI GATC 4 cut(s) 147, 168, 417, 480
BstMAI GTCTC 3 cut(s) 88, 241, 520
BstMBI GATC 4 cut(s) 144, 165, 414, 477
BstMWI GCNNNNNNNGC 4 cut(s) 384, 605, 829, 846
BstNI CCWGG 1 cut(s) 857
BstNSI RCATGY 1 cut(s) 129
BstPAI GACNNNNGTC 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 485, 771, 855
BstUI CGCG 2 cut(s) 243, 763
BstV1I GCAGC 2 cut(s) 305, 690
BstV2I GAAGAC 1 cut(s) 476
BsuRI GGCC 3 cut(s) 30, 74, 192
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 802, 822
BtsIMutI CAGTG 2 cut(s) 501, 579
BtuMI TCGCGA 1 cut(s) 243
CfoI GCGC 3 cut(s) 200, 494, 763
Cfr13I GGNCC 2 cut(s) 28, 366
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 126, 466
CviJI RGCY 7 cut(s) 30, 74, 192, 550, 703, 737, 914
CviKI_1 RGCY 7 cut(s) 30, 74, 192, 550, 703, 737, 914
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 3 cut(s) 681, 713, 915
DpnI GATC 4 cut(s) 146, 167, 416, 479
DpnII GATC 4 cut(s) 144, 165, 414, 477
Eco130I CCWWGG 1 cut(s) 886
Eco147I AGGCCT 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 886
ErhI CCWWGG 1 cut(s) 886
FaeI CATG 2 cut(s) 129, 469
FaiI YATR 4 cut(s) 127, 252, 300, 467
FaqI GGGAC 4 cut(s) 114, 197, 201, 262
FatI CATG 2 cut(s) 125, 465
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 2 cut(s) 172, 571
Fnu4HI GCNGC 2 cut(s) 294, 704
FokI GGATG 2 cut(s) 809, 829
Fsp4HI GCNGC 2 cut(s) 294, 704
FspAI RTGCGCAY 1 cut(s) 199
FspBI CTAG 3 cut(s) 80, 107, 495
FspI TGCGCA 1 cut(s) 199
GlaI GCGC 3 cut(s) 199, 493, 762
GluI GCNGC 2 cut(s) 294, 704
GsaI CCCAGC 1 cut(s) 741
GsuI CTGGAG 3 cut(s) 355, 753, 878
HaeIII GGCC 3 cut(s) 30, 74, 192
HapII CCGG 5 cut(s) 43, 426, 486, 510, 773
HgaI GACGC 1 cut(s) 316
HhaI GCGC 3 cut(s) 200, 494, 763
Hin1II CATG 2 cut(s) 129, 469
Hin6I GCGC 3 cut(s) 198, 492, 761
HinP1I GCGC 3 cut(s) 198, 492, 761
HinfI GANTC 3 cut(s) 498, 506, 513
HpaII CCGG 5 cut(s) 43, 426, 486, 510, 773
HphI GGTGA 5 cut(s) 26, 154, 409, 739, 890
Hpy166II GTNNAC 2 cut(s) 173, 572
Hpy188I TCNGA 1 cut(s) 745
Hpy188III TCNNGA 5 cut(s) 37, 218, 242, 510, 622
Hpy8I GTNNAC 2 cut(s) 173, 572
HpyAV CCTTC 3 cut(s) 182, 876, 906
HpyCH4III ACNGT 2 cut(s) 114, 160
HpyCH4IV ACGT 3 cut(s) 6, 585, 754
HpyCH4V TGCA 4 cut(s) 96, 408, 526, 631
HpyF10VI GCNNNNNNNGC 4 cut(s) 384, 605, 829, 846
HpyF3I CTNAG 3 cut(s) 681, 713, 915
HpySE526I ACGT 3 cut(s) 6, 585, 754
Hsp92II CATG 2 cut(s) 129, 469
HspAI GCGC 3 cut(s) 198, 492, 761
Kpn2I TCCGGA 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 4 cut(s) 144, 165, 414, 477
LmnI GCTCC 4 cut(s) 356, 547, 700, 734
Lsp1109I GCAGC 2 cut(s) 305, 690
LweI GCATC 3 cut(s) 83, 412, 585
MaeI CTAG 3 cut(s) 80, 107, 495
MaeII ACGT 3 cut(s) 6, 585, 754
MaeIII GTNAC 3 cut(s) 341, 652, 727
MalI GATC 4 cut(s) 146, 167, 416, 479
MboI GATC 4 cut(s) 144, 165, 414, 477
MboII GAAGA 3 cut(s) 481, 572, 891
MfeI CAATTG 3 cut(s) 360, 632, 666
MlyI GAGTC 1 cut(s) 522
MmeI TCCRAC 4 cut(s) 247, 334, 568, 638
MroI TCCGGA 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 124
MspI CCGG 5 cut(s) 43, 426, 486, 510, 773
MspR9I CCNGG 3 cut(s) 487, 773, 857
MunI CAATTG 3 cut(s) 360, 632, 666
MvaI CCWGG 1 cut(s) 857
MvnI CGCG 2 cut(s) 243, 763
MwoI GCNNNNNNNGC 4 cut(s) 384, 605, 829, 846
NciI CCSGG 2 cut(s) 487, 773
NdeII GATC 4 cut(s) 144, 165, 414, 477
NlaIII CATG 2 cut(s) 129, 469
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 3 cut(s) 341, 652, 727
NruI TCGCGA 1 cut(s) 243
NsbI TGCGCA 1 cut(s) 199
NspI RCATGY 1 cut(s) 129
PceI AGGCCT 1 cut(s) 192
PciI ACATGT 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 760
PfeI GAWTC 2 cut(s) 498, 506
PfoI TCCNGGA 1 cut(s) 855
PkrI GCNGC 2 cut(s) 295, 705
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PpuMI RGGWCCY 1 cut(s) 366
PscI ACATGT 1 cut(s) 125
PshAI GACNNNNGTC 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 754
Psp5II RGGWCCY 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 855
PspFI CCCAGC 1 cut(s) 737
PspGI CCWGG 1 cut(s) 855
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 2 cut(s) 28, 366
PspPPI RGGWCCY 1 cut(s) 366
RruI TCGCGA 1 cut(s) 243
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 124
SatI GCNGC 2 cut(s) 294, 704
Sau3AI GATC 4 cut(s) 144, 165, 414, 477
Sau96I GGNCC 2 cut(s) 28, 366
ScaI AGTACT 1 cut(s) 111
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 3 cut(s) 487, 773, 857
SfaNI GCATC 3 cut(s) 83, 412, 585
SinI GGWCC 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 137, 620
SmoI CTYRAG 2 cut(s) 137, 620
SseBI AGGCCT 1 cut(s) 192
SsiI CCGC 2 cut(s) 433, 606
SspMI CTAG 3 cut(s) 80, 107, 495
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 485, 771, 855
StyI CCWWGG 1 cut(s) 886
TaaI ACNGT 2 cut(s) 114, 160
TaiI ACGT 3 cut(s) 9, 588, 757
TaqI TCGA 5 cut(s) 147, 164, 380, 458, 708
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 2 cut(s) 498, 506
TscAI CASTG 2 cut(s) 508, 586
TseFI GTSAC 3 cut(s) 341, 652, 727
TseI GCWGC 2 cut(s) 293, 703
Tsp45I GTSAC 3 cut(s) 341, 652, 727
TspDTI ATGAA 5 cut(s) 17, 482, 813, 858, 897
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 508, 586
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 3 cut(s) 394, 553, 851
XceI RCATGY 1 cut(s) 129
XmiI GTMKAC 2 cut(s) 172, 571
XspI CTAG 3 cut(s) 80, 107, 495
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.