FvH4_2g32610

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Forward (+)
24676184 .. 24677899
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32610.t1

Sequence Viewer

Length: 1047 bp
ATGGTGGCGATTTCTGAACTGAATGACGATCTATTAGGTCACATCCTCAAACGGGTCAGCGATCCGGGTGATCGGAAACGGGTCTCCGAAGTTTGCAAACTATGGTTGACAGTCGAGGGTCTAACAAGAAGGTCACTCACTTTACTCCGACTCAGTCGTCTCCGAAAGGTACTGCCTCGATTCCCTAATCTAGTTTCATTCCAGACATCCGGGCCTTATTTCGAGGAAGCCGACCTCGTATTCGTAGCCCAAACATGTCCAAAACTTGAGACCATCGATCTCAGCACCGCACACGGGGCAGGGATGTTACCGGAGAACGGTCTTTACGGTTTGTTACGTGGCGGCGTTCTTCGGAAACTGTCCAAGGTTTCGGTCAGAGGGAGATGGCGTGTAGCCACCGCCAGATGGGTACATAGGTTATATAATCTGACTTATTTGGATTTGGGAGGCTGCAGTGATGTCGATGACTATGCGTTAGAAGCAATTGGGCTTGTGGGCAATTTGATATATTTGAATTTAGAACTTTGCGGCGGTGTGTCGGACAATGGTTTGGGATTTTTAGCACAGGGAAGGTGCACAAAGACCCTCAACACGTTGGTGCTGGCTGACTGCAAGGGTATTACTGACTTGGGGCTCTCGCATTTGCAGAATTTCCGATTCTTGGAAGAGCTGAATTTGAAAGGCTGTTATGTCACTGATACTGGAGTTATATCTGCAATCTCTCCAGATCGATCATTCAAGAAGTTGAACTTGGCTAACAAGTATTTGTCGGACCAAAGCATGGCCTTTGTTGCTGAGAATTGCCCCAACTTAGAGATTCTTGATTTAAGTAGTTCTCAGGTAACTGGCGCCGGAGTTCGTGCATTTTATGGTCACAGGTGTCTACAGTCTCTTGTTTTGCGGTGGTGTCCTGAATTTTGTTGGTCCGATATCGAGCACATGGTGCTTGGATGCAAGTCACTCAAGTCTATCGTCCTGAGTATGCCGCCTATGCACTCAGTTCCGGAAAGCGTTAGCAGAATTGTGTCGTTGATTGATGAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

349

Amino Acids

38.47

Weight (kDa)

7.95

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 6 - 44 3.1e-08 F-box
DUF7885 PF25372 141 - 216 5.6e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 848
AccB7I CCANNNNNTGG 1 cut(s) 781
AccI GTMKAC 1 cut(s) 883
AccIII TCCGGA 1 cut(s) 1003
AciI CCGC 7 cut(s) 288, 342, 399, 528, 531, 901, 986
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 4 cut(s) 514, 649, 673, 914
AcyI GRCGYC 1 cut(s) 849
AdeI CACNNNGTG 1 cut(s) 943
AfaI GTAC 2 cut(s) 171, 411
AfiI CCNNNNNNNGG 6 cut(s) 52, 294, 317, 405, 661, 781
AflIII ACRYGT 2 cut(s) 254, 591
AgsI TTSAA 4 cut(s) 514, 679, 739, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 1 cut(s) 670
AluI AGCT 1 cut(s) 670
Alw21I GWGCWC 2 cut(s) 578, 939
Alw26I GTCTC 4 cut(s) 88, 164, 263, 894
Alw44I GTGCAC 1 cut(s) 574
AlwI GGATC 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 1003
AoxI GGCC 2 cut(s) 212, 783
ApaLI GTGCAC 1 cut(s) 574
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 4 cut(s) 514, 649, 673, 914
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 851
AspS9I GGNCC 3 cut(s) 212, 772, 924
AsuC2I CCSGG 2 cut(s) 66, 211
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 2 cut(s) 772, 924
BaeGI GKGCMC 1 cut(s) 578
BaeI ACNNNNGTAYC 4 cut(s) 401, 434, 690, 723
BanI GGYRCC 1 cut(s) 848
BanII GRGCYC 1 cut(s) 636
Bbv12I GWGCWC 2 cut(s) 578, 939
BbvI GCAGC 1 cut(s) 437
BccI CCATC 3 cut(s) 281, 378, 399
BcgI CGANNNNNNTGC 4 cut(s) 442, 452, 476, 486
BcnI CCSGG 2 cut(s) 66, 211
BcoDI GTCTC 4 cut(s) 88, 164, 263, 894
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 451, 884
BfoI RGCGCY 1 cut(s) 852
BisI GCNGC 4 cut(s) 343, 451, 529, 986
BlsI GCNGC 4 cut(s) 344, 452, 530, 987
Bme1390I CCNGG 2 cut(s) 66, 211
Bme18I GGWCC 2 cut(s) 772, 924
BmgT120I GGNCC 3 cut(s) 212, 772, 924
BmiI GGNNCC 1 cut(s) 850
BmrFI CCNGG 2 cut(s) 66, 211
BmsI GCATC 1 cut(s) 941
BpmI CTGGAG 2 cut(s) 708, 723
BpuEI CTTGAG 2 cut(s) 287, 947
BpuMI CCSGG 2 cut(s) 66, 211
Bsa29I ATCGAT 2 cut(s) 276, 730
BsaAI YACGTR 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 849
BsaI GGTCTC 2 cut(s) 88, 263
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 2 cut(s) 310, 1003
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 6 cut(s) 52, 294, 317, 405, 661, 781
Bse1I ACTGG 2 cut(s) 706, 850
BseAI TCCGGA 1 cut(s) 1003
BseCI ATCGAT 2 cut(s) 276, 730
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 4 cut(s) 42, 206, 309, 956
BseLI CCNNNNNNNGG 6 cut(s) 52, 294, 317, 405, 661, 781
BseMII CTCAG 6 cut(s) 166, 295, 786, 851, 968, 1011
BseNI ACTGG 2 cut(s) 706, 850
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 1 cut(s) 437
BshFI GGCC 2 cut(s) 214, 785
BshNI GGYRCC 1 cut(s) 848
BshVI ATCGAT 2 cut(s) 276, 730
BsiHKAI GWGCWC 2 cut(s) 578, 939
BsiSI CCGG 5 cut(s) 65, 210, 311, 852, 1004
BslI CCNNNNNNNGG 6 cut(s) 52, 294, 317, 405, 661, 781
BsmAI GTCTC 4 cut(s) 88, 164, 263, 894
BsmBI CGTCTC 1 cut(s) 164
BsnI GGCC 2 cut(s) 214, 785
Bso31I GGTCTC 2 cut(s) 88, 263
Bsp1286I GDGCHC 3 cut(s) 578, 636, 939
Bsp13I TCCGGA 1 cut(s) 1003
Bsp143I GATC 6 cut(s) 28, 61, 70, 277, 727, 731
BspACI CCGC 7 cut(s) 288, 342, 399, 528, 531, 901, 986
BspANI GGCC 2 cut(s) 214, 785
BspCNI CTCAG 6 cut(s) 165, 294, 787, 850, 969, 1010
BspDI ATCGAT 2 cut(s) 276, 730
BspEI TCCGGA 1 cut(s) 1003
BspLI GGNNCC 1 cut(s) 850
BspMAI CTGCAG 1 cut(s) 455
BspPI GGATC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 848
BspTNI GGTCTC 2 cut(s) 88, 263
BsrI ACTGG 2 cut(s) 706, 850
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 6 cut(s) 28, 61, 70, 277, 727, 731
BssNI GRCGYC 1 cut(s) 849
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 5 cut(s) 112, 320, 329, 360, 888
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 849
BstAPI GCANNNNNTGC 1 cut(s) 943
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 7 cut(s) 152, 281, 795, 811, 837, 977, 997
BstF5I GGATG 4 cut(s) 42, 206, 309, 956
BstH2I RGCGCY 1 cut(s) 852
BstHHI GCGC 1 cut(s) 851
BstKTI GATC 6 cut(s) 31, 64, 73, 280, 730, 734
BstMAI GTCTC 4 cut(s) 88, 164, 263, 894
BstMBI GATC 6 cut(s) 28, 61, 70, 277, 727, 731
BstMWI GCNNNNNNNGC 5 cut(s) 296, 479, 791, 943, 991
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 64, 209
BstSFI CTRYAG 2 cut(s) 451, 884
BstSLI GKGCMC 1 cut(s) 578
BstV1I GCAGC 1 cut(s) 437
Bsu15I ATCGAT 2 cut(s) 276, 730
BsuRI GGCC 2 cut(s) 214, 785
BsuTUI ATCGAT 2 cut(s) 276, 730
BtsCI GGATG 4 cut(s) 42, 206, 309, 956
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 2 cut(s) 460, 693
Cac8I GCNNGC 1 cut(s) 603
CfoI GCGC 1 cut(s) 851
Cfr13I GGNCC 3 cut(s) 212, 772, 924
ClaI ATCGAT 2 cut(s) 276, 730
Csp6I GTAC 2 cut(s) 170, 410
CviAII CATG 3 cut(s) 255, 781, 940
CviQI GTAC 2 cut(s) 170, 410
DdeI CTNAG 7 cut(s) 152, 281, 795, 811, 837, 977, 997
DinI GGCGCC 1 cut(s) 850
DpnI GATC 6 cut(s) 30, 63, 72, 279, 729, 733
DpnII GATC 6 cut(s) 28, 61, 70, 277, 727, 731
DraIII CACNNNGTG 1 cut(s) 943
DrdI GACNNNNNNGTC 1 cut(s) 156
DseDI GACNNNNNNGTC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 636
Eco31I GGTCTC 2 cut(s) 88, 263
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 2 cut(s) 772, 924
EcoRV GATATC 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 636
EgeI GGCGCC 1 cut(s) 850
EheI GGCGCC 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 3 cut(s) 258, 784, 943
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 3 cut(s) 254, 780, 939
FblI GTMKAC 1 cut(s) 883
Fnu4HI GCNGC 4 cut(s) 343, 451, 529, 986
FokI GGATG 4 cut(s) 29, 193, 316, 963
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 4 cut(s) 343, 451, 529, 986
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 850
GluI GCNGC 4 cut(s) 343, 451, 529, 986
GsuI CTGGAG 2 cut(s) 708, 723
HaeII RGCGCY 1 cut(s) 852
HaeIII GGCC 2 cut(s) 214, 785
HapII CCGG 5 cut(s) 65, 210, 311, 852, 1004
HhaI GCGC 1 cut(s) 851
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 3 cut(s) 258, 784, 943
Hin6I GCGC 1 cut(s) 849
HinP1I GCGC 1 cut(s) 849
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 4 cut(s) 150, 180, 657, 817
HpaII CCGG 5 cut(s) 65, 210, 311, 852, 1004
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 108, 576, 884
Hpy188III TCNNGA 7 cut(s) 202, 725, 739, 821, 911, 976, 1004
Hpy8I GTNNAC 3 cut(s) 108, 576, 884
HpyAV CCTTC 2 cut(s) 123, 564
HpyCH4III ACNGT 5 cut(s) 112, 320, 329, 360, 888
HpyCH4IV ACGT 2 cut(s) 337, 593
HpyCH4V TGCA 9 cut(s) 96, 453, 576, 612, 646, 716, 863, 954, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 479, 791, 943, 991
HpyF3I CTNAG 7 cut(s) 152, 281, 795, 811, 837, 977, 997
HpySE526I ACGT 2 cut(s) 337, 593
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 3 cut(s) 258, 784, 943
HspAI GCGC 1 cut(s) 849
KasI GGCGCC 1 cut(s) 848
Kpn2I TCCGGA 1 cut(s) 1003
Kzo9I GATC 6 cut(s) 28, 61, 70, 277, 727, 731
LguI GCTCTTC 1 cut(s) 660
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 941
MaeI CTAG 1 cut(s) 191
MaeII ACGT 2 cut(s) 337, 593
MaeIII GTNAC 8 cut(s) 38, 132, 306, 333, 691, 841, 872, 957
MalI GATC 6 cut(s) 30, 63, 72, 279, 729, 733
MboI GATC 6 cut(s) 28, 61, 70, 277, 727, 731
MboII GAAGA 2 cut(s) 341, 677
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 3 cut(s) 578, 636, 939
MluCI AATT 8 cut(s) 483, 499, 514, 649, 673, 799, 914, 1020
Mly113I GGCGCC 1 cut(s) 849
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 3 cut(s) 172, 519, 750
MnlI CCTC 9 cut(s) 56, 109, 186, 217, 245, 371, 440, 596, 1033
MroI TCCGGA 1 cut(s) 1003
MseI TTAA 1 cut(s) 827
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 5 cut(s) 65, 210, 311, 852, 1004
MspR9I CCNGG 2 cut(s) 66, 211
MunI CAATTG 1 cut(s) 483
MwoI GCNNNNNNNGC 5 cut(s) 296, 479, 791, 943, 991
NarI GGCGCC 1 cut(s) 849
NciI CCSGG 2 cut(s) 66, 211
NdeII GATC 6 cut(s) 28, 61, 70, 277, 727, 731
NlaIII CATG 3 cut(s) 258, 784, 943
NlaIV GGNNCC 1 cut(s) 850
NmuCI GTSAC 5 cut(s) 38, 132, 691, 872, 957
NspI RCATGY 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 596
PciI ACATGT 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 3 cut(s) 180, 657, 817
PflFI GACNNNGTC 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 781
PkrI GCNGC 4 cut(s) 344, 452, 530, 987
PleI GAGTC 1 cut(s) 144
PluTI GGCGCC 1 cut(s) 852
PpsI GAGTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 338
PscI ACATGT 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 850
PspPI GGNCC 3 cut(s) 212, 772, 924
PsrI GAACNNNNNNTAC 2 cut(s) 308, 340
PstI CTGCAG 1 cut(s) 455
PsyI GACNNNGTC 1 cut(s) 153
RsaI GTAC 2 cut(s) 171, 411
RsaNI GTAC 2 cut(s) 170, 410
RseI CAYNNNNRTG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 1 cut(s) 827
SatI GCNGC 4 cut(s) 343, 451, 529, 986
Sau3AI GATC 6 cut(s) 28, 61, 70, 277, 727, 731
Sau96I GGNCC 3 cut(s) 212, 772, 924
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 66, 211
SduI GDGCHC 3 cut(s) 578, 636, 939
SfaNI GCATC 1 cut(s) 941
SfcI CTRYAG 2 cut(s) 451, 884
SfoI GGCGCC 1 cut(s) 850
SinI GGWCC 2 cut(s) 772, 924
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 266, 962
SmoI CTYRAG 2 cut(s) 266, 962
Sse9I AATT 8 cut(s) 483, 499, 514, 649, 673, 799, 914, 1020
SsiI CCGC 7 cut(s) 288, 342, 399, 528, 531, 901, 986
SspDI GGCGCC 1 cut(s) 848
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 64, 209
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 5 cut(s) 112, 320, 329, 360, 888
TaiI ACGT 2 cut(s) 340, 596
TaqI TCGA 7 cut(s) 114, 178, 222, 276, 462, 730, 933
TaqII GACCGA 1 cut(s) 361
TasI AATT 8 cut(s) 483, 499, 514, 649, 673, 799, 914, 1020
TauI GCSGC 3 cut(s) 345, 531, 988
TfiI GAWTC 3 cut(s) 180, 657, 817
Tru1I TTAA 1 cut(s) 827
Tru9I TTAA 1 cut(s) 827
TscAI CASTG 2 cut(s) 460, 700
TseFI GTSAC 5 cut(s) 38, 132, 691, 872, 957
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 5 cut(s) 38, 132, 691, 872, 957
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 2 cut(s) 460, 700
Tth111I GACNNNGTC 1 cut(s) 153
Van91I CCANNNNNTGG 1 cut(s) 781
VneI GTGCAC 1 cut(s) 574
VpaK11BI GGWCC 2 cut(s) 772, 924
XapI RAATTY 4 cut(s) 514, 649, 673, 914
XceI RCATGY 1 cut(s) 258
XmiI GTMKAC 1 cut(s) 883
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.