Rh3AG145800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000358
Physical Location & Seq
Reverse (-)
12896616 .. 12902414
5799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG145800.1

Sequence Viewer

Length: 705 bp
ATGATATCCAAGAAGAAGACGAGCACAACAGCTGAAGAAGAAACTGCAGTAGTGGTCTGTAAGCAATGGTGGGTAGCGGAGGGTCGGAACCGATCATGCATTCGTGTTCTCGAACTCGATCGTCTCCCTCGATTACTTGATAGATTTCCAAACTTGGTCACATTCCAAACATCCCTGTCTCTAAGCAACGCTGACCTCGAATTATTAGCCCAAAGATGTCCCAAACTAGAGGACGTCATCGACCTTACAACACCGGTGCGGTCCTTTAGTGTAGTTGGGACCCGAGGTCTATGCACACTATCAAATAAGTGTCCCAGATTATCCAAGGTTGTGCTTCGTGGGAGATATTATAAGATTGAGGATGATGGAATTGTGTATTTCATAACTTTAGCGGATAACTTGAAGTATTTGAATTTGGAATTGTGTAAGCTGGTTTCTGACAAAACCCTTGAAGCAATTGGGTCCTCAAGTTGTCCGATTACCGTTTTGAATTTGGAAAGCTGTGACATTACGGATTGTGGATTGAGATTTTTGACAAATGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTAAGGGGTGTCATAGAATCACTGATTCTGGGGTCTCACTCTTGCAGAAGATGTGTGTCTCGGAGGAGCTAAATTTGACTCATTGTCGGCGAGTCACTGAATTGGAGGCTTGGCGATCTCCGCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

234

Amino Acids

26.31

Weight (kDa)

8.39

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 126 - 207 2.6e-13 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AasI GACNNNNNNGTC 1 cut(s) 541
AatII GACGTC 1 cut(s) 237
AciI CCGC 4 cut(s) 77, 259, 392, 695
AcsI RAATTY 3 cut(s) 412, 490, 646
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 234
AflII CTTAAG 1 cut(s) 575
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 403, 412, 452, 490
AhdI GACNNNNNGTC 2 cut(s) 285, 657
AluBI AGCT 4 cut(s) 32, 430, 501, 643
AluI AGCT 4 cut(s) 32, 430, 501, 643
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 4 cut(s) 128, 183, 613, 637
Ama87I CYCGRG 1 cut(s) 282
ApoI RAATTY 3 cut(s) 412, 490, 646
AsiGI ACCGGT 1 cut(s) 253
AspS9I GGNCC 4 cut(s) 261, 279, 462, 571
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 4 cut(s) 261, 279, 462, 571
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 26
BccI CCATC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BcoDI GTCTC 4 cut(s) 128, 183, 613, 637
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 575
Bme18I GGWCC 4 cut(s) 261, 279, 462, 571
BmeRI GACNNNNNGTC 2 cut(s) 285, 657
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 4 cut(s) 261, 279, 462, 571
BmiI GGNNCC 4 cut(s) 89, 280, 281, 463
BpiI GAAGAC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 2 cut(s) 283, 324
BsaWI WCCGGW 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 283, 324
BseGI GGATG 2 cut(s) 170, 367
BseMI GCAATG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 121
BshTI ACCGGT 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 3 cut(s) 204, 292, 297
BsmAI GTCTC 4 cut(s) 128, 183, 613, 637
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 3 cut(s) 204, 292, 297
BsmI GAATGC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 613
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 92, 118, 689
BspACI CCGC 4 cut(s) 77, 259, 392, 695
BspLI GGNNCC 4 cut(s) 89, 280, 281, 463
BspMAI CTGCAG 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 283, 324
BssMI GATC 3 cut(s) 92, 118, 689
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 484
BstACI GRCGYC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 575
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 170, 367
BstKTI GATC 3 cut(s) 95, 121, 692
BstMAI GTCTC 4 cut(s) 128, 183, 613, 637
BstMBI GATC 3 cut(s) 92, 118, 689
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 170, 367
BtsIMutI CAGTG 2 cut(s) 594, 669
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 4 cut(s) 261, 279, 462, 571
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 1 cut(s) 96
CviJI RGCY 6 cut(s) 32, 209, 430, 501, 643, 683
CviKI_1 RGCY 6 cut(s) 32, 209, 430, 501, 643, 683
DdeI CTNAG 1 cut(s) 182
DpnI GATC 3 cut(s) 94, 120, 691
DpnII GATC 3 cut(s) 92, 118, 689
DrdI GACNNNNNNGTC 1 cut(s) 541
DriI GACNNNNNGTC 2 cut(s) 285, 657
DseDI GACNNNNNNGTC 1 cut(s) 541
Eam1105I GACNNNNNGTC 2 cut(s) 285, 657
Eco130I CCWWGG 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 613
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 4 cut(s) 261, 279, 462, 571
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 282
EcoO109I RGGNCCY 2 cut(s) 279, 462
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 99
FaiI YATR 6 cut(s) 97, 292, 351, 383, 560, 588
FaqI GGGAC 3 cut(s) 204, 292, 297
FatI CATG 1 cut(s) 95
FokI GGATG 2 cut(s) 157, 374
FspBI CTAG 1 cut(s) 227
HapII CCGG 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 1 cut(s) 99
HinfI GANTC 4 cut(s) 591, 599, 652, 666
HpaII CCGG 1 cut(s) 254
Hpy188I TCNGA 4 cut(s) 87, 439, 477, 637
Hpy188III TCNNGA 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 47, 99, 294, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 694
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 1 cut(s) 99
KflI GGGWCCC 1 cut(s) 279
Kzo9I GATC 3 cut(s) 92, 118, 689
LmnI GCTCC 1 cut(s) 640
LpnPI CCDG 5 cut(s) 188, 267, 328, 416, 588
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 3 cut(s) 157, 503, 667
MalI GATC 3 cut(s) 94, 120, 691
MboI GATC 3 cut(s) 92, 118, 689
MboII GAAGA 5 cut(s) 25, 28, 47, 50, 634
MfeI CAATTG 2 cut(s) 456, 698
MhlI GDGCHC 1 cut(s) 26
MlyI GAGTC 2 cut(s) 646, 675
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 9 cut(s) 73, 138, 206, 223, 278, 352, 475, 631, 673
Mph1103I ATGCAT 1 cut(s) 101
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 1 cut(s) 254
MunI CAATTG 2 cut(s) 456, 698
Mva1269I GAATGC 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 694
NdeII GATC 3 cut(s) 92, 118, 689
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 4 cut(s) 89, 280, 281, 463
NmuCI GTSAC 3 cut(s) 157, 503, 667
NsiI ATGCAT 1 cut(s) 101
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 195
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 591, 599
PinAI ACCGGT 1 cut(s) 253
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 2 cut(s) 646, 674
PpsI GAGTC 2 cut(s) 646, 674
PpuMI RGGWCCY 2 cut(s) 279, 462
PsiI TTATAA 1 cut(s) 351
Psp5II RGGWCCY 2 cut(s) 279, 462
PspN4I GGNNCC 4 cut(s) 89, 280, 281, 463
PspPI GGNCC 4 cut(s) 261, 279, 462, 571
PspPPI RGGWCCY 2 cut(s) 279, 462
PstI CTGCAG 1 cut(s) 49
PvuI CGATCG 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 576
Sau3AI GATC 3 cut(s) 92, 118, 689
Sau96I GGNCC 4 cut(s) 261, 279, 462, 571
SchI GAGTC 2 cut(s) 646, 675
SduI GDGCHC 1 cut(s) 26
SetI ASST 9 cut(s) 34, 198, 237, 246, 289, 330, 432, 503, 645
SfcI CTRYAG 1 cut(s) 45
SgrAI CRCCGGYG 1 cut(s) 253
SinI GGWCC 4 cut(s) 261, 279, 462, 571
SmlI CTYRAG 2 cut(s) 466, 575
SmoI CTYRAG 2 cut(s) 466, 575
SsiI CCGC 4 cut(s) 77, 259, 392, 695
SspMI CTAG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 484
TaiI ACGT 1 cut(s) 237
TaqI TCGA 5 cut(s) 111, 117, 130, 198, 240
TfiI GAWTC 2 cut(s) 591, 599
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 2 cut(s) 601, 676
TseFI GTSAC 3 cut(s) 157, 503, 667
Tsp45I GTSAC 3 cut(s) 157, 503, 667
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 601, 676
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 4 cut(s) 261, 279, 462, 571
XapI RAATTY 3 cut(s) 412, 490, 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XspI CTAG 1 cut(s) 227
ZraI GACGTC 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.