RLG00000012028

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000358
Physical Location & Seq
Reverse (-)
14667039 .. 14668523
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012028

Sequence Viewer

Length: 612 bp
ATGCAATCGGAGGAGCTTCGCTGGCAAGATTTGATTGGTGAGACATGGTTCCAAGTGACATTTCTGACAATTTCCTCAGCCAGACAGAAAACTCAGCCATTGCAACGAGATTTTGGCTCCCTCTTCTTCATGACTAGACTGGAGGCCATCGTCCTTCATAGAGTTGACACAACATCCATCATGGAGCAACTTGGGGAAGACTGGCTCGATGCACTGAGTGATGAGTCTCCCACACAGCACGTAACTTTGACGGTTTTGGATTTGAAAAACTCTGCTTCGGTTACTGTCCAAGCCCTTAAAGCAGAGCTGAATTTGGCTGAATGTGAACTAGTCACCGACGTTGGAGGTGTGGCAATCTCCGCTATTCGGACCCTCAAGAAATTGAACTTGAGTGAGGTGTTTGGCATGATAAACCAGACCCTTGTTGCTGTTGCTCAGAATTGCCTCAACTTGGAGGTGCTCACTTTGAATGGTATTATGCGGGTGACTGGAGTTGGTATTCGTGCATACTCGGGTCACAAGTGCTTGCAATCCCTTGATCTGTTACATTGTTACTGTAGAATTAGTGGAGCTGATTTGGAACAAGCAGCGCTTGGATGCCCTTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

204

Amino Acids

22.42

Weight (kDa)

4.94

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 360, 481
AcsI RAATTY 1 cut(s) 310
AdeI CACNNNGTG 1 cut(s) 218
AfeI AGCGCT 1 cut(s) 591
AfiI CCNNNNNNNGG 2 cut(s) 366, 451
AgsI TTSAA 3 cut(s) 265, 385, 469
AhlI ACTAGT 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 3 cut(s) 16, 307, 572
AluI AGCT 3 cut(s) 16, 307, 572
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 35, 231
Ama87I CYCGRG 1 cut(s) 511
Aor51HI AGCGCT 1 cut(s) 591
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 50, 325, 496
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 599
BccI CCATC 2 cut(s) 155, 185
BcoDI GTCTC 2 cut(s) 35, 231
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 2 cut(s) 135, 329
BfmI CTRYAG 1 cut(s) 556
BfoI RGCGCY 1 cut(s) 593
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
Bme18I GGWCC 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 3 cut(s) 50, 118, 371
BmsI GCATC 2 cut(s) 199, 587
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 2 cut(s) 161, 510
Bpu10I CCTNAGC 1 cut(s) 76
BpuEI CTTGAG 2 cut(s) 359, 409
BsaAI YACGTR 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 451
Bse1I ACTGG 3 cut(s) 144, 206, 493
Bse3DI GCAATG 1 cut(s) 98
BseGI GGATG 2 cut(s) 173, 602
BseLI CCNNNNNNNGG 2 cut(s) 366, 451
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 4 cut(s) 90, 107, 206, 449
BseNI ACTGG 3 cut(s) 144, 206, 493
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 599
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 366, 451
BsmAI GTCTC 2 cut(s) 35, 231
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 1 cut(s) 538
BspACI CCGC 2 cut(s) 360, 481
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 4 cut(s) 89, 106, 207, 448
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 50, 118, 371
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 3 cut(s) 144, 206, 493
BssMI GATC 1 cut(s) 538
Bst4CI ACNGT 3 cut(s) 253, 286, 557
Bst6I CTCTTC 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 23, 527
BstDEI CTNAG 4 cut(s) 76, 93, 215, 435
BstF5I GGATG 2 cut(s) 173, 602
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 2 cut(s) 35, 231
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 3 cut(s) 22, 299, 359
BstSFI CTRYAG 1 cut(s) 556
BstV1I GCAGC 1 cut(s) 599
BstV2I GAAGAC 1 cut(s) 204
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 2 cut(s) 173, 602
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 23, 527
CciI TCATGA 1 cut(s) 129
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 369
CviAII CATG 4 cut(s) 45, 130, 181, 406
DdeI CTNAG 4 cut(s) 76, 93, 215, 435
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
DraIII CACNNNGTG 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 369
Eco47III AGCGCT 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 511
FaeI CATG 4 cut(s) 48, 133, 184, 409
FaiI YATR 7 cut(s) 46, 131, 159, 182, 407, 479, 508
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 4 cut(s) 44, 129, 180, 405
FauI CCCGC 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 588
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 2 cut(s) 135, 329
GlaI GCGC 1 cut(s) 591
GluI GCNGC 1 cut(s) 588
GsuI CTGGAG 2 cut(s) 161, 510
HaeII RGCGCY 1 cut(s) 593
HaeIII GGCC 1 cut(s) 146
HhaI GCGC 1 cut(s) 592
Hin1II CATG 4 cut(s) 48, 133, 184, 409
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 224
HphI GGTGA 3 cut(s) 50, 325, 496
Hpy166II GTNNAC 2 cut(s) 166, 326
Hpy188I TCNGA 4 cut(s) 10, 66, 369, 438
Hpy188III TCNNGA 2 cut(s) 130, 376
Hpy8I GTNNAC 2 cut(s) 166, 326
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 164, 612
HpyCH4III ACNGT 3 cut(s) 253, 286, 557
HpyCH4IV ACGT 2 cut(s) 240, 339
HpyCH4V TGCA 5 cut(s) 4, 103, 212, 506, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 299, 359
HpyF3I CTNAG 4 cut(s) 76, 93, 215, 435
HpySE526I ACGT 2 cut(s) 240, 339
Hsp92II CATG 4 cut(s) 48, 133, 184, 409
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 4 cut(s) 13, 122, 184, 569
LpnPI CCDG 6 cut(s) 7, 94, 125, 187, 428, 474
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 2 cut(s) 199, 587
MaeI CTAG 2 cut(s) 135, 329
MaeII ACGT 2 cut(s) 240, 339
MaeIII GTNAC 8 cut(s) 55, 241, 280, 331, 484, 515, 543, 551
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 3 cut(s) 115, 118, 209
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 5 cut(s) 69, 310, 380, 439, 561
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 9 cut(s) 4, 85, 131, 136, 338, 383, 388, 448, 455
MseI TTAA 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 22, 299, 359
NdeII GATC 1 cut(s) 538
NlaIII CATG 4 cut(s) 48, 133, 184, 409
NlaIV GGNNCC 3 cut(s) 50, 118, 371
NmuCI GTSAC 4 cut(s) 55, 331, 484, 515
PagI TCATGA 1 cut(s) 129
PkrI GCNGC 1 cut(s) 589
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 50, 118, 371
PspPI GGNCC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 233
SduI GDGCHC 1 cut(s) 462
SetI ASST 8 cut(s) 18, 243, 309, 342, 349, 399, 459, 574
SfaNI GCATC 2 cut(s) 199, 587
SfcI CTRYAG 1 cut(s) 556
SinI GGWCC 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 374, 388
SmoI CTYRAG 2 cut(s) 374, 388
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 5 cut(s) 69, 310, 380, 439, 561
SsiI CCGC 2 cut(s) 360, 481
SspMI CTAG 2 cut(s) 135, 329
TaaI ACNGT 3 cut(s) 253, 286, 557
TaiI ACGT 2 cut(s) 243, 342
TaqI TCGA 1 cut(s) 207
TasI AATT 5 cut(s) 69, 310, 380, 439, 561
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 4 cut(s) 55, 331, 484, 515
TseI GCWGC 1 cut(s) 587
Tsp45I GTSAC 4 cut(s) 55, 331, 484, 515
TspDTI ATGAA 3 cut(s) 118, 146, 594
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 1 cut(s) 310
XspI CTAG 2 cut(s) 135, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.