FvH4_2g32520

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Reverse (-)
24631882 .. 24633951
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32520.t1

Sequence Viewer

Length: 1086 bp
ATGTTGAGACTTGTGCGAATCCCCCGCCGAATCGGAGACAAATCATTAATGGTGGAGATTTCTGAACTGAATGACGATCTAATTGGTCACATCCTGAAACGGGTCAGCGAGCTGGGTGGTCGGAAACGGTTCTCCCAAGTCTGCAAACAATGGTTAAAAGTTGAGGGACAAACCAGAACGTCGCTCAATCTTCTCCGACTCAGTTTTCTCCGTCGGGTACTTCCTCGATTCCCTAATCTAGTTTCATTCCGGACTGGCGGGTCTTTTTTGGAGGAAGCCGACCTCGAATTCATAGCCAAAACATGTCCCAATCTGGAGACCATCGATCTCAACACCGAAGAATTCGAATCAAGGTCTTTATCGACGAACGGCCTTTCGAAACTGTCCAAGGTTTCGGTCAGAGGGAGATGTCGTGTAGACACTGTGAGGTGGCTACATAAGTTGGCTCATGATAACTTGACTTATTTAGATTTGGGGTACTGCTGGTTTGTCGATGAAACTGCGGCAGAAGCTATTGGGCAACTGTGCACTTGTTTGAGCTATTTGAATTTAAGGTATTCCAATGTTTCGGACAATGGTTTGAGATTGTTGGCACATGGAAGCTGCTCAAAAGCCATTAAGACATTGGTGCTTGCTAAATGCTATCACATAACTGATTCGGGGCTGGCGCATTTGCGGAATATGCAATGCTTGGAAGAGCTGGATTTGGAAGGCAATGTTCTCACTGATACAGGTGTTATTGCTGCAATCTCTGGAAATCAATCCCTCCAGAAGTTGAACTTGAGTTGGTTGAGGAATGTGTCGGACCGAAGCATGGTGTTTGTTGCTGAGAATTGCCCCAACTTAAAGTTTCTTGATTTAAGGGGTACTAGGGTAACTGGCGCCGGAATCCGTGCATTTTCAGGTCACATGTGCTTAGAGTCTCTTGTTTTGCGCCTGTGTTATGCTTTTTCTTGGCGTGATGTGGAGCACATGGTGCTTGGATGCCCGTCACTGAAGTCTTTCGTCCTGAGTGAGAAGATCATCAAAAAGCCAATTCCAGAACGCCTTAGCAAAATTGTGACCTTGGTGGATTACATACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like IQ LRR_6 WW

Protein Analysis

362

Amino Acids

40.77

Weight (kDa)

9.01

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 91 - 229 2.7e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 881
AccI GTMKAC 1 cut(s) 417
AccIII TCCGGA 1 cut(s) 249
AciI CCGC 4 cut(s) 25, 258, 503, 676
AcsI RAATTY 3 cut(s) 287, 341, 547
AcuI CTGAAG 1 cut(s) 1016
AcyI GRCGYC 1 cut(s) 882
AdeI CACNNNGTG 1 cut(s) 976
AfaI GTAC 3 cut(s) 219, 479, 868
AfiI CCNNNNNNNGG 2 cut(s) 100, 814
AflIII ACRYGT 2 cut(s) 302, 909
AgsI TTSAA 2 cut(s) 547, 778
AluBI AGCT 5 cut(s) 112, 512, 540, 603, 700
AluI AGCT 5 cut(s) 112, 512, 540, 603, 700
Alw21I GWGCWC 2 cut(s) 530, 972
Alw26I GTCTC 3 cut(s) 30, 311, 927
Alw44I GTGCAC 1 cut(s) 526
Aor13HI TCCGGA 1 cut(s) 249
AoxI GGCC 1 cut(s) 370
ApaLI GTGCAC 1 cut(s) 526
ApeKI GCWGC 2 cut(s) 603, 743
ApoI RAATTY 3 cut(s) 287, 341, 547
AseI ATTAAT 1 cut(s) 47
Asp700I GAANNNNTTC 2 cut(s) 128, 1001
AspLEI GCGC 3 cut(s) 670, 884, 936
AspS9I GGNCC 1 cut(s) 805
AsuII TTCGAA 2 cut(s) 345, 377
AvaII GGWCC 1 cut(s) 805
BaeGI GKGCMC 1 cut(s) 530
BaeI ACNNNNGTAYC 4 cut(s) 720, 753, 858, 891
BanI GGYRCC 1 cut(s) 881
Bbv12I GWGCWC 2 cut(s) 530, 972
BbvI GCAGC 2 cut(s) 590, 730
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 385
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BcoDI GTCTC 3 cut(s) 30, 311, 927
BfaI CTAG 2 cut(s) 239, 870
BfoI RGCGCY 1 cut(s) 885
BisI GCNGC 3 cut(s) 504, 604, 744
BlsI GCNGC 3 cut(s) 505, 605, 745
Bme18I GGWCC 1 cut(s) 805
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 1 cut(s) 883
BmsI GCATC 1 cut(s) 974
BpmI CTGGAG 2 cut(s) 335, 752
Bpu10I CCTNAGC 1 cut(s) 1049
Bpu14I TTCGAA 2 cut(s) 345, 377
BpuEI CTTGAG 1 cut(s) 802
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 387, 1065
BsaWI WCCGGW 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 814
Bse1I ACTGG 2 cut(s) 259, 883
Bse3DI GCAATG 2 cut(s) 692, 721
BseAI TCCGGA 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 387, 1065
BseGI GGATG 2 cut(s) 90, 989
BseLI CCNNNNNNNGG 2 cut(s) 100, 814
BseMI GCAATG 2 cut(s) 692, 721
BseMII CTCAG 3 cut(s) 214, 819, 1001
BseNI ACTGG 2 cut(s) 259, 883
BseSI GKGCMC 1 cut(s) 530
BseXI GCAGC 2 cut(s) 590, 730
BseYI CCCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 881
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 530, 972
BsiSI CCGG 2 cut(s) 250, 885
BslFI GGGAC 2 cut(s) 180, 291
BslI CCNNNNNNNGG 2 cut(s) 100, 814
BsmAI GTCTC 3 cut(s) 30, 311, 927
BsmFI GGGAC 2 cut(s) 180, 291
BsnI GGCC 1 cut(s) 372
Bso31I GGTCTC 1 cut(s) 311
Bsp119I TTCGAA 2 cut(s) 345, 377
Bsp1286I GDGCHC 2 cut(s) 530, 972
Bsp13I TCCGGA 1 cut(s) 249
Bsp143I GATC 3 cut(s) 76, 325, 1020
BspACI CCGC 4 cut(s) 25, 258, 503, 676
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 3 cut(s) 213, 820, 1002
BspDI ATCGAT 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 249
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 883
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 2 cut(s) 345, 377
BspT107I GGYRCC 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 2 cut(s) 692, 721
BsrI ACTGG 2 cut(s) 259, 883
BssECI CCNNGG 2 cut(s) 387, 1065
BssMI GATC 3 cut(s) 76, 325, 1020
BssNI GRCGYC 1 cut(s) 882
BssT1I CCWWGG 2 cut(s) 387, 1065
Bst4CI ACNGT 4 cut(s) 129, 384, 424, 525
Bst6I CTCTTC 1 cut(s) 690
BstACI GRCGYC 1 cut(s) 882
BstAPI GCANNNNNTGC 1 cut(s) 976
BstBI TTCGAA 2 cut(s) 345, 377
BstC8I GCNNGC 3 cut(s) 110, 633, 666
BstDEI CTNAG 5 cut(s) 200, 828, 916, 1010, 1049
BstF5I GGATG 2 cut(s) 90, 989
BstH2I RGCGCY 1 cut(s) 885
BstHHI GCGC 3 cut(s) 670, 884, 936
BstKTI GATC 3 cut(s) 79, 328, 1023
BstMAI GTCTC 3 cut(s) 30, 311, 927
BstMBI GATC 3 cut(s) 76, 325, 1020
BstMWI GCNNNNNNNGC 3 cut(s) 509, 682, 976
BstNSI RCATGY 2 cut(s) 306, 913
BstSLI GKGCMC 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 590, 730
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 1 cut(s) 372
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 2 cut(s) 90, 989
BtsIMutI CAGTG 3 cut(s) 420, 723, 992
Cac8I GCNNGC 3 cut(s) 110, 633, 666
CciI TCATGA 1 cut(s) 448
CfoI GCGC 3 cut(s) 670, 884, 936
Cfr13I GGNCC 1 cut(s) 805
ClaI ATCGAT 1 cut(s) 324
CpoI CGGWCCG 1 cut(s) 805
Csp6I GTAC 3 cut(s) 218, 478, 867
CspI CGGWCCG 1 cut(s) 805
CviAII CATG 6 cut(s) 303, 449, 596, 814, 910, 973
CviQI GTAC 3 cut(s) 218, 478, 867
DdeI CTNAG 5 cut(s) 200, 828, 916, 1010, 1049
DinI GGCGCC 1 cut(s) 883
DpnI GATC 3 cut(s) 78, 327, 1022
DpnII GATC 3 cut(s) 76, 325, 1020
DraIII CACNNNGTG 1 cut(s) 976
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Eco130I CCWWGG 2 cut(s) 387, 1065
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 1016
EcoRI GAATTC 2 cut(s) 287, 341
EcoT14I CCWWGG 2 cut(s) 387, 1065
EgeI GGCGCC 1 cut(s) 883
EheI GGCGCC 1 cut(s) 883
ErhI CCWWGG 2 cut(s) 387, 1065
FaeI CATG 6 cut(s) 306, 452, 599, 817, 913, 976
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FaqI GGGAC 2 cut(s) 180, 291
FatI CATG 6 cut(s) 302, 448, 595, 813, 909, 972
FauI CCCGC 2 cut(s) 32, 251
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 3 cut(s) 504, 604, 744
FokI GGATG 2 cut(s) 77, 996
Fsp4HI GCNGC 3 cut(s) 504, 604, 744
FspBI CTAG 2 cut(s) 239, 870
GlaI GCGC 3 cut(s) 669, 883, 935
GluI GCNGC 3 cut(s) 504, 604, 744
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 2 cut(s) 335, 752
HaeII RGCGCY 1 cut(s) 885
HaeIII GGCC 1 cut(s) 372
HapII CCGG 2 cut(s) 250, 885
HhaI GCGC 3 cut(s) 670, 884, 936
Hin1I GRCGYC 1 cut(s) 882
Hin1II CATG 6 cut(s) 306, 452, 599, 817, 913, 976
Hin6I GCGC 3 cut(s) 668, 882, 934
HinP1I GCGC 3 cut(s) 668, 882, 934
HinfI GANTC 8 cut(s) 18, 30, 198, 228, 347, 656, 888, 920
HpaII CCGG 2 cut(s) 250, 885
Hpy166II GTNNAC 2 cut(s) 418, 528
Hpy188I TCNGA 7 cut(s) 35, 64, 123, 197, 401, 571, 805
Hpy188III TCNNGA 9 cut(s) 94, 250, 314, 449, 753, 769, 854, 1009, 1040
Hpy8I GTNNAC 2 cut(s) 418, 528
Hpy99I CGWCG 3 cut(s) 184, 216, 367
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 4 cut(s) 129, 384, 424, 525
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 5 cut(s) 144, 528, 685, 746, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 682, 976
HpyF3I CTNAG 5 cut(s) 200, 828, 916, 1010, 1049
HpySE526I ACGT 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 882
Hsp92II CATG 6 cut(s) 306, 452, 599, 817, 913, 976
HspAI GCGC 3 cut(s) 668, 882, 934
KasI GGCGCC 1 cut(s) 881
Kpn2I TCCGGA 1 cut(s) 249
Kzo9I GATC 3 cut(s) 76, 325, 1020
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 1 cut(s) 967
Lsp1109I GCAGC 2 cut(s) 590, 730
LweI GCATC 1 cut(s) 974
MaeI CTAG 2 cut(s) 239, 870
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 5 cut(s) 86, 874, 905, 990, 1060
MalI GATC 3 cut(s) 78, 327, 1022
MboI GATC 3 cut(s) 76, 325, 1020
MboII GAAGA 4 cut(s) 182, 350, 707, 1030
MhlI GDGCHC 2 cut(s) 530, 972
MluCI AATT 7 cut(s) 81, 287, 341, 547, 832, 1035, 1056
Mly113I GGCGCC 1 cut(s) 882
MlyI GAGTC 2 cut(s) 192, 929
MmeI TCCRAC 3 cut(s) 101, 220, 783
MnlI CCTC 8 cut(s) 157, 234, 265, 293, 395, 420, 776, 786
MroI TCCGGA 1 cut(s) 249
MroXI GAANNNNTTC 2 cut(s) 128, 1001
MseI TTAA 6 cut(s) 47, 155, 551, 618, 845, 860
MspI CCGG 2 cut(s) 250, 885
MwoI GCNNNNNNNGC 3 cut(s) 509, 682, 976
NarI GGCGCC 1 cut(s) 882
NdeII GATC 3 cut(s) 76, 325, 1020
NlaIII CATG 6 cut(s) 306, 452, 599, 817, 913, 976
NlaIV GGNNCC 1 cut(s) 883
NmuCI GTSAC 4 cut(s) 86, 905, 990, 1060
NspI RCATGY 2 cut(s) 306, 913
NspV TTCGAA 2 cut(s) 345, 377
PagI TCATGA 1 cut(s) 448
PciI ACATGT 2 cut(s) 302, 909
PciSI GCTCTTC 1 cut(s) 690
PdmI GAANNNNTTC 2 cut(s) 128, 1001
PfeI GAWTC 6 cut(s) 18, 30, 228, 347, 656, 888
PkrI GCNGC 3 cut(s) 505, 605, 745
PleI GAGTC 2 cut(s) 192, 928
PluTI GGCGCC 1 cut(s) 885
PpsI GAGTC 2 cut(s) 192, 928
PscI ACATGT 2 cut(s) 302, 909
PshBI ATTAAT 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 883
PspPI GGNCC 1 cut(s) 805
RsaI GTAC 3 cut(s) 219, 479, 868
RsaNI GTAC 3 cut(s) 218, 478, 867
Rsr2I CGGWCCG 1 cut(s) 805
RsrII CGGWCCG 1 cut(s) 805
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 6 cut(s) 47, 155, 551, 618, 845, 860
SatI GCNGC 3 cut(s) 504, 604, 744
Sau3AI GATC 3 cut(s) 76, 325, 1020
Sau96I GGNCC 1 cut(s) 805
SchI GAGTC 2 cut(s) 192, 929
SduI GDGCHC 2 cut(s) 530, 972
SfaNI GCATC 1 cut(s) 974
SfoI GGCGCC 1 cut(s) 883
SfuI TTCGAA 2 cut(s) 345, 377
SinI GGWCC 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
Sse9I AATT 7 cut(s) 81, 287, 341, 547, 832, 1035, 1056
SsiI CCGC 4 cut(s) 25, 258, 503, 676
SspDI GGCGCC 1 cut(s) 881
SspMI CTAG 2 cut(s) 239, 870
StyI CCWWGG 2 cut(s) 387, 1065
TaaI ACNGT 4 cut(s) 129, 384, 424, 525
TaiI ACGT 1 cut(s) 182
TaqI TCGA 7 cut(s) 226, 285, 324, 345, 362, 377, 492
TaqII GACCGA 2 cut(s) 385, 822
TasI AATT 7 cut(s) 81, 287, 341, 547, 832, 1035, 1056
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 6 cut(s) 18, 30, 228, 347, 656, 888
Tru1I TTAA 6 cut(s) 47, 155, 551, 618, 845, 860
Tru9I TTAA 6 cut(s) 47, 155, 551, 618, 845, 860
TscAI CASTG 3 cut(s) 427, 730, 999
TseFI GTSAC 4 cut(s) 86, 905, 990, 1060
TseI GCWGC 2 cut(s) 603, 743
Tsp45I GTSAC 4 cut(s) 86, 905, 990, 1060
TspDTI ATGAA 3 cut(s) 234, 280, 510
TspGWI ACGGA 2 cut(s) 200, 881
TspRI CASTG 3 cut(s) 427, 730, 999
VneI GTGCAC 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 805
VspI ATTAAT 1 cut(s) 47
XapI RAATTY 3 cut(s) 287, 341, 547
XceI RCATGY 2 cut(s) 306, 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 2 cut(s) 128, 1001
XspI CTAG 2 cut(s) 239, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.