FvH4_6g41671

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000358
Physical Location & Seq
Forward (+)
32714156 .. 32715509
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41671.t1

Sequence Viewer

Length: 1122 bp
ATGGCTTCGAACACCGAAGAACCAGGCAAAGCTTCTCTTTTGAGCGACGACGAACTGGGGTCAATGCTCAAGTGGGTTACCGACCCAGATGACAGAAAATCCTTCTCCGAAGTCTGCAAGCAATGGTCCAAAGTCGAGGGTCTAAACCGATCATCCCTCCGTCTTCTCCAACCTGATCTCCTCCGCCGTGTTCTACCCAGGTGCCCAAACTTGATCTCCTTCCAAACCCAGGAGTCCTTCTCCGACGCCGACCTCGAATTCTTGGTCCAAACATGCCCCAGGCTCGAAGTCATCAACCTCAGTGTTTGGGACCACGCACCCAAGGTTGAACCTTTGTTGTCTTCTGATGGTGTTTACGCACTGGCAATTCGGTGTCCGAACATAACAAAGCTTTTGCTTAGAAGAAGATTGAAGACAGGAGTTGTTGCGGTTGCGAAGTTGTTACCCAACTTGACGCATTTGGACTTAGGATTCTGTCATGAGGTTGAGGACAAAGACATTGAAGCCATTGTGTCGGCGGCGAGTTCGATTACCTATTTGAACTTGGAAGGTTGTTTTTGTGTCACAGATAGAGGTTTGGAGTTTCTGTCGGATGCGTCATGTTCGAAAACGTTGAAGACATTGGTGCTTGCAGGGTGTTGTAAGATCAGTGACTGGGGGGTTTCGGATTTGCGGTACATGTGTTGCTTGGAGAATCTGAGTTTGGCTAACTATGGGGACAAAATCACTGACGTGGGCTGTTTTGCGATATCGGAGATTAAAACTCTGAAGAGGTTGAACTTGGCTGGGTTGATGTCACTGACAGACCAAACAGTTGTTGCTATTGCTGAGAATTGCCTCAACTTGGAGGTGCTTAATTTGAGTGACTGTCAAAGCGTGACTAGAGCTGGTCTTCATGCCTTTTCGGGTCACACATGCTTGAATACTCTTGTTTTGCATTATTGTTTCAAGTTTTTTGGGATTGATTTGGAGCTCTTGGTGCTGGAGTGTCCGACATTGAAGTGCATTGTGGTGGATGAGTATTTGGGACGGCAGATATTGCCACAAATGCAAGAGAGCACTAGAAGATGTGTGAGTTACAAGTTTATTTGTGATTGGTCTTTCAAAGACCTTGAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

374

Amino Acids

41.67

Weight (kDa)

5.22

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 15 - 51 7.7e-07 F-box
DUF7885 PF25372 146 - 318 5.8e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 4 cut(s) 184, 428, 518, 673
AclI AACGTT 1 cut(s) 611
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 788
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 2 cut(s) 229, 844
AflIII ACRYGT 1 cut(s) 678
AjiI CACGTC 1 cut(s) 733
AjnI CCWGG 4 cut(s) 22, 197, 228, 278
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AleI CACNNNNGTG 1 cut(s) 731
AluBI AGCT 4 cut(s) 32, 391, 887, 973
AluI AGCT 4 cut(s) 32, 391, 887, 973
Alw21I GWGCWC 2 cut(s) 975, 1061
AlwNI CAGNNNCTG 1 cut(s) 654
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AspS9I GGNCC 3 cut(s) 126, 265, 310
AsuII TTCGAA 2 cut(s) 8, 605
AvaII GGWCC 3 cut(s) 126, 265, 310
BaeGI GKGCMC 1 cut(s) 206
BaeI ACNNNNGTAYC 2 cut(s) 667, 700
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 975
BbsI GAAGAC 5 cut(s) 155, 333, 419, 623, 884
Bbv12I GWGCWC 2 cut(s) 975, 1061
BccI CCATC 1 cut(s) 341
BceAI ACGGC 2 cut(s) 171, 1046
BciT130I CCWGG 4 cut(s) 24, 199, 230, 280
BfaI CTAG 2 cut(s) 882, 1062
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 4 cut(s) 24, 199, 230, 280
Bme18I GGWCC 3 cut(s) 126, 265, 310
BmgBI CACGTC 1 cut(s) 733
BmgT120I GGNCC 3 cut(s) 126, 265, 310
BmiI GGNNCC 2 cut(s) 203, 311
BmrFI CCNGG 4 cut(s) 24, 199, 230, 280
BmrI ACTGGG 2 cut(s) 65, 664
BmsI GCATC 1 cut(s) 583
BmuI ACTGGG 2 cut(s) 65, 664
BpiI GAAGAC 5 cut(s) 155, 333, 419, 623, 884
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 1004
Bpu14I TTCGAA 2 cut(s) 8, 605
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 4 cut(s) 197, 228, 278, 321
BsaXI ACNNNNNCTCC 6 cut(s) 162, 192, 200, 230, 572, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 844
Bse1I ACTGG 3 cut(s) 60, 366, 659
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 4 cut(s) 24, 199, 230, 280
BseDI CCNNGG 4 cut(s) 197, 228, 278, 321
BseGI GGATG 3 cut(s) 152, 598, 1021
BseLI CCNNNNNNNGG 2 cut(s) 229, 844
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 3 cut(s) 313, 689, 819
BseNI ACTGG 3 cut(s) 60, 366, 659
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 206
BseYI CCCAGC 1 cut(s) 785
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 975, 1061
BslFI GGGAC 3 cut(s) 323, 731, 1041
BslI CCNNNNNNNGG 2 cut(s) 229, 844
BsmFI GGGAC 3 cut(s) 323, 731, 1041
Bsp119I TTCGAA 2 cut(s) 8, 605
Bsp1286I GDGCHC 3 cut(s) 206, 975, 1061
Bsp143I GATC 4 cut(s) 149, 175, 213, 645
BspACI CCGC 4 cut(s) 184, 428, 518, 673
BspCNI CTCAG 3 cut(s) 312, 690, 820
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 203, 311
BspT104I TTCGAA 2 cut(s) 8, 605
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 3 cut(s) 60, 366, 659
BssECI CCNNGG 4 cut(s) 197, 228, 278, 321
BssMI GATC 4 cut(s) 149, 175, 213, 645
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 4 cut(s) 24, 199, 230, 280
Bst4CI ACNGT 2 cut(s) 814, 869
Bst6I CTCTTC 1 cut(s) 764
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 1039
BstBI TTCGAA 2 cut(s) 8, 605
BstC8I GCNNGC 2 cut(s) 119, 630
BstDEI CTNAG 5 cut(s) 299, 398, 466, 698, 828
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 3 cut(s) 152, 598, 1021
BstKTI GATC 4 cut(s) 152, 178, 216, 648
BstMBI GATC 4 cut(s) 149, 175, 213, 645
BstMWI GCNNNNNNNGC 3 cut(s) 979, 1039, 1048
BstNI CCWGG 4 cut(s) 24, 199, 230, 280
BstNSI RCATGY 3 cut(s) 276, 682, 918
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 4 cut(s) 22, 197, 228, 278
BstSLI GKGCMC 1 cut(s) 206
BstV2I GAAGAC 5 cut(s) 155, 333, 419, 623, 884
BtrI CACGTC 1 cut(s) 733
BtsCI GGATG 3 cut(s) 152, 598, 1021
BtsIMutI CAGTG 5 cut(s) 307, 359, 655, 726, 797
Cac8I GCNNGC 2 cut(s) 119, 630
CaiI CAGNNNCTG 1 cut(s) 654
CciI TCATGA 1 cut(s) 478
Cfr13I GGNCC 3 cut(s) 126, 265, 310
CseI GACGC 3 cut(s) 254, 463, 585
Csp6I GTAC 1 cut(s) 676
CviAII CATG 6 cut(s) 273, 479, 600, 679, 896, 915
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 5 cut(s) 299, 398, 466, 698, 828
DpnI GATC 4 cut(s) 151, 177, 215, 647
DpnII GATC 4 cut(s) 149, 175, 213, 645
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 973
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 975
Eco32I GATATC 1 cut(s) 750
Eco47I GGWCC 3 cut(s) 126, 265, 310
Eco53kI GAGCTC 1 cut(s) 973
Eco57I CTGAAG 1 cut(s) 788
Eco91I GGTNACC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 973
EcoO65I GGTNACC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 4 cut(s) 22, 197, 228, 278
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 6 cut(s) 276, 482, 603, 682, 899, 918
FaiI YATR 8 cut(s) 274, 383, 480, 601, 680, 714, 897, 916
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 3 cut(s) 323, 731, 1041
FatI CATG 6 cut(s) 272, 478, 599, 678, 895, 914
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 3 cut(s) 139, 605, 1028
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 2 cut(s) 882, 1062
GluI GCNGC 1 cut(s) 519
GsaI CCCAGC 1 cut(s) 789
GsuI CTGGAG 1 cut(s) 1004
HgaI GACGC 3 cut(s) 254, 463, 585
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 6 cut(s) 276, 482, 603, 682, 899, 918
HindIII AAGCTT 2 cut(s) 30, 389
HinfI GANTC 3 cut(s) 233, 471, 694
Hpy166II GTNNAC 1 cut(s) 355
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 3 cut(s) 50, 53, 248
HpyAV CCTTC 4 cut(s) 112, 229, 247, 542
HpyCH4III ACNGT 2 cut(s) 814, 869
HpyCH4IV ACGT 2 cut(s) 611, 732
HpyCH4V TGCA 5 cut(s) 117, 632, 937, 1005, 1051
HpyF10VI GCNNNNNNNGC 3 cut(s) 979, 1039, 1048
HpyF3I CTNAG 5 cut(s) 299, 398, 466, 698, 828
HpySE526I ACGT 2 cut(s) 611, 732
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 6 cut(s) 276, 482, 603, 682, 899, 918
Kzo9I GATC 4 cut(s) 149, 175, 213, 645
LmnI GCTCC 1 cut(s) 970
LweI GCATC 1 cut(s) 583
MaeI CTAG 2 cut(s) 882, 1062
MaeII ACGT 2 cut(s) 611, 732
MaeIII GTNAC 9 cut(s) 76, 441, 562, 650, 795, 863, 877, 908, 1076
MalI GATC 4 cut(s) 151, 177, 215, 647
MboI GATC 4 cut(s) 149, 175, 213, 645
MhlI GDGCHC 3 cut(s) 206, 975, 1061
MluCI AATT 4 cut(s) 257, 366, 832, 856
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 4 cut(s) 193, 267, 570, 1016
MseI TTAA 2 cut(s) 759, 855
MslI CAYNNNNRTG 3 cut(s) 731, 1000, 1010
MspR9I CCNGG 4 cut(s) 24, 199, 230, 280
MvaI CCWGG 4 cut(s) 24, 199, 230, 280
MwoI GCNNNNNNNGC 3 cut(s) 979, 1039, 1048
NdeII GATC 4 cut(s) 149, 175, 213, 645
NlaIII CATG 6 cut(s) 276, 482, 603, 682, 899, 918
NlaIV GGNNCC 2 cut(s) 203, 311
NmuCI GTSAC 6 cut(s) 562, 650, 795, 863, 877, 908
NspI RCATGY 3 cut(s) 276, 682, 918
NspV TTCGAA 2 cut(s) 8, 605
OliI CACNNNNGTG 1 cut(s) 731
PagI TCATGA 1 cut(s) 478
PciI ACATGT 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 2 cut(s) 471, 694
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PscI ACATGT 1 cut(s) 678
Psp124BI GAGCTC 1 cut(s) 975
Psp1406I AACGTT 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 22, 197, 228, 278
PspEI GGTNACC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 4 cut(s) 22, 197, 228, 278
PspN4I GGNNCC 2 cut(s) 203, 311
PspPI GGNCC 3 cut(s) 126, 265, 310
PstNI CAGNNNCTG 1 cut(s) 654
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 3 cut(s) 731, 1000, 1010
SacI GAGCTC 1 cut(s) 975
SaqAI TTAA 2 cut(s) 759, 855
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 4 cut(s) 149, 175, 213, 645
Sau96I GGNCC 3 cut(s) 126, 265, 310
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 4 cut(s) 24, 199, 230, 280
SduI GDGCHC 3 cut(s) 206, 975, 1061
SfaNI GCATC 1 cut(s) 583
SfuI TTCGAA 2 cut(s) 8, 605
SinI GGWCC 3 cut(s) 126, 265, 310
SmiMI CAYNNNNRTG 3 cut(s) 731, 1000, 1010
SmlI CTYRAG 2 cut(s) 68, 1112
SmoI CTYRAG 2 cut(s) 68, 1112
Sse9I AATT 4 cut(s) 257, 366, 832, 856
SsiI CCGC 4 cut(s) 184, 428, 518, 673
SspMI CTAG 2 cut(s) 882, 1062
SstI GAGCTC 1 cut(s) 975
StyD4I CCNGG 4 cut(s) 22, 197, 228, 278
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 814, 869
TaiI ACGT 2 cut(s) 614, 735
TaqI TCGA 6 cut(s) 8, 135, 255, 285, 527, 605
TasI AATT 4 cut(s) 257, 366, 832, 856
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 2 cut(s) 471, 694
Tru1I TTAA 2 cut(s) 759, 855
Tru9I TTAA 2 cut(s) 759, 855
TscAI CASTG 5 cut(s) 307, 366, 655, 733, 804
TseFI GTSAC 6 cut(s) 562, 650, 795, 863, 877, 908
Tsp45I GTSAC 6 cut(s) 562, 650, 795, 863, 877, 908
TspDTI ATGAA 1 cut(s) 884
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 5 cut(s) 307, 366, 655, 733, 804
VpaK11BI GGWCC 3 cut(s) 126, 265, 310
XapI RAATTY 1 cut(s) 257
XceI RCATGY 3 cut(s) 276, 682, 918
XspI CTAG 2 cut(s) 882, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.