MD17G1109100.v1.1

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000358
Physical Location & Seq
Reverse (-)
9341240 .. 9343609
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1109100.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGGGCATCAGTGGAGGTTTGGTCAGGAGTGTTTTCTCGAGAAACCGATCTTTCGGGACACATGAGAGCAATGTGAGGAGTAATGTGACAGAGAGGAGAAGATGGAGCTCGGTTAGATCGTACCTGTGTGGGGATGAATATAACTCAGTCATGGCAGAGAATGATTCCGCTTCAGTTAAGAGCTCCGTGGCTACTGCCACCACACAGTTCAATTCGGTTTTAGCTGTTGCAGACGAAGATTCTAGTTCGGTTAGGAGATCCGAGGCAACTGTCATGCAACCGATGCCAGAAGACTTGAGAGACAAGGGAAACACCAGAAGAGAAGCAACTAAGGTAGATGTGGAAGTGGCAAAGACAGAATCTTCAGTCTCCAAAACAATGTCTGAGGAGCATGCAGCAACCATCATCCAGTCAGCATTTAGAGGCTTTCGGATTAGGTGTCGAAATGGAGGAGTTATATCCAAGGATGGTGAGCAGCAGCTTATTGCTGGAGCGGAAAGTCCAAGTAGGGAGTCTCTAGGCACGTCGGTAGAAGTTCAAACGGGAAATTCTGTGCAAGTTTACTCGATTCAAGGAGAAAATTCGGCTGCTCACCACCGGACACAAGAGAAAGCTAGAGTGCAGGCGCTAAAGTTGAAGGAAGAATGGGATGCCAGCACAGTTAGTAGCAACATATCAAGAATGAGAATGCAGAACAGATTGGAAGCAACAACTAGGCGGGAGAGAGCACTGGCGTACGCCTTTTCACAACAGCTAAGGATCTGCTCAAAGAAAAGGCACACCACATCTGATGGCACAGAACAGAACATGGGTTGGAGCTGGCTAGAACGGTGGATGGCAACCCGCCCTGCTGAAATCTCCCCCGCAGAAAGTCATATAAGCAACCACGTTGAACCAATTCACAGCAGCCAACGATTTGTCATCGGAAAGAGATTCTTCGACGTTGCAGGTGAAGAAAAAGAGAGCTGCGGATCTAATGAAGTCGGTGTCCTATTTGATAACTTTCCGGTACCAGCAGAAGAGAAGGATGGCTTAAGTCCAACTAAGACCAGATTCAAGGCTACGAGAAGCCTATCAAGGCGAAAATCGATGCCAAGCTACGAGTGTGGGAAAGAGTATCCCAAGGTAAGCAAGAAGGATTGTTCGAGGGAACCCAAAAGAGATGAAGAGCGCAACGAAAAGCAAACGGGGAGAAGGAAGTGCAGAAATACTTCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

407

Amino Acids

45.57

Weight (kDa)

9.39

Isoelectric Point (pI)

67.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 938
Acc36I ACCTGC 1 cut(s) 938
Acc65I GGTACC 1 cut(s) 1009
AccB1I GGYRCC 1 cut(s) 1009
AccBSI CCGCTC 1 cut(s) 494
AciI CCGC 6 cut(s) 168, 494, 718, 844, 864, 969
AclWI GGATC 3 cut(s) 252, 767, 979
AcsI RAATTY 2 cut(s) 547, 580
AcuI CTGAAG 2 cut(s) 156, 348
AfaI GTAC 3 cut(s) 122, 737, 1011
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 1 cut(s) 1033
AgsI TTSAA 6 cut(s) 211, 539, 572, 637, 893, 1057
AjiI CACGTC 1 cut(s) 525
AluBI AGCT 9 cut(s) 108, 183, 224, 481, 614, 754, 819, 966, 1098
AluI AGCT 9 cut(s) 108, 183, 224, 481, 614, 754, 819, 966, 1098
Alw21I GWGCWC 3 cut(s) 110, 185, 730
Alw26I GTCTC 3 cut(s) 294, 373, 519
AlwI GGATC 3 cut(s) 252, 767, 979
Ama87I CYCGRG 1 cut(s) 37
ApeKI GCWGC 6 cut(s) 395, 475, 478, 587, 906, 966
ApoI RAATTY 2 cut(s) 547, 580
Asp700I GAANNNNTTC 2 cut(s) 897, 1210
Asp718I GGTACC 1 cut(s) 1009
AspLEI GCGC 2 cut(s) 628, 1173
AsuHPI GGTGA 3 cut(s) 482, 584, 962
AvaI CYCGRG 1 cut(s) 37
BanI GGYRCC 1 cut(s) 1009
BanII GRGCYC 2 cut(s) 110, 185
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 3 cut(s) 110, 185, 730
BbvI GCAGC 6 cut(s) 407, 487, 490, 574, 918, 953
BccI CCATC 6 cut(s) 96, 410, 461, 785, 829, 1022
BciVI GTATCC 1 cut(s) 1128
BcoDI GTCTC 3 cut(s) 294, 373, 519
BfaI CTAG 5 cut(s) 243, 518, 615, 714, 824
BfoI RGCGCY 1 cut(s) 629
BfrI CTTAAG 1 cut(s) 1033
BfuAI ACCTGC 1 cut(s) 938
BfuI GTATCC 1 cut(s) 1128
BisI GCNGC 6 cut(s) 396, 476, 479, 588, 907, 967
BlsI GCNGC 6 cut(s) 397, 477, 480, 589, 908, 968
BmeT110I CYCGRG 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 525
BmiI GGNNCC 2 cut(s) 1011, 1152
BmsI GCATC 4 cut(s) 15, 273, 640, 1080
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 316
Bsa29I ATCGAT 1 cut(s) 1088
BsaJI CCNNGG 4 cut(s) 186, 261, 462, 1122
BsaWI WCCGGW 2 cut(s) 597, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 409, 735
Bse3DI GCAATG 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 1088
BseDI CCNNGG 4 cut(s) 186, 261, 462, 1122
BseGI GGATG 6 cut(s) 139, 405, 472, 655, 840, 1033
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 2 cut(s) 159, 375
BseNI ACTGG 2 cut(s) 409, 735
BseRI GAGGAG 4 cut(s) 91, 109, 401, 465
BseXI GCAGC 6 cut(s) 407, 487, 490, 574, 918, 953
BsgI GTGCAG 1 cut(s) 641
BshNI GGYRCC 1 cut(s) 1009
BshVI ATCGAT 1 cut(s) 1088
BsiHKAI GWGCWC 3 cut(s) 110, 185, 730
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 598, 1007
BsiWI CGTACG 1 cut(s) 735
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 3 cut(s) 294, 373, 519
BsmFI GGGAC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 693
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 3 cut(s) 110, 185, 730
Bsp143I GATC 5 cut(s) 47, 116, 257, 759, 971
BspACI CCGC 6 cut(s) 168, 494, 718, 844, 864, 969
BspCNI CTCAG 2 cut(s) 158, 376
BspDI ATCGAT 1 cut(s) 1088
BspLI GGNNCC 2 cut(s) 1011, 1152
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 3 cut(s) 252, 767, 979
BspQI GCTCTTC 1 cut(s) 1161
BspT107I GGYRCC 1 cut(s) 1009
BspTI CTTAAG 1 cut(s) 1033
BsrBI CCGCTC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 409, 735
BssECI CCNNGG 4 cut(s) 186, 261, 462, 1122
BssMI GATC 5 cut(s) 47, 116, 257, 759, 971
BssT1I CCWWGG 2 cut(s) 462, 1122
Bst4CI ACNGT 4 cut(s) 207, 271, 661, 831
Bst6I CTCTTC 3 cut(s) 313, 1014, 1161
BstAFI CTTAAG 1 cut(s) 1033
BstAPI GCANNNNNTGC 1 cut(s) 283
BstC8I GCNNGC 4 cut(s) 393, 624, 655, 821
BstDEI CTNAG 5 cut(s) 145, 330, 384, 755, 1044
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 6 cut(s) 139, 405, 472, 655, 840, 1033
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 2 cut(s) 628, 1173
BstKTI GATC 5 cut(s) 50, 119, 260, 762, 974
BstMAI GTCTC 3 cut(s) 294, 373, 519
BstMBI GATC 5 cut(s) 47, 116, 257, 759, 971
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 395
BstV1I GCAGC 6 cut(s) 407, 487, 490, 574, 918, 953
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 3 cut(s) 257, 759, 971
BstYI RGATCY 3 cut(s) 257, 759, 971
Bsu15I ATCGAT 1 cut(s) 1088
BsuI GTATCC 1 cut(s) 1128
BsuTUI ATCGAT 1 cut(s) 1088
BtgI CCRYGG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 525
BtsCI GGATG 6 cut(s) 139, 405, 472, 655, 840, 1033
BtsIMutI CAGTG 2 cut(s) 16, 728
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 4 cut(s) 393, 624, 655, 821
CfoI GCGC 2 cut(s) 628, 1173
ClaI ATCGAT 1 cut(s) 1088
Csp6I GTAC 3 cut(s) 121, 736, 1010
CviAII CATG 5 cut(s) 62, 151, 274, 392, 808
CviQI GTAC 3 cut(s) 121, 736, 1010
DdeI CTNAG 5 cut(s) 145, 330, 384, 755, 1044
DpnI GATC 5 cut(s) 49, 118, 259, 761, 973
DpnII GATC 5 cut(s) 47, 116, 257, 759, 971
Eam1104I CTCTTC 3 cut(s) 313, 1014, 1161
EarI CTCTTC 3 cut(s) 313, 1014, 1161
Ecl136II GAGCTC 2 cut(s) 108, 183
Eco130I CCWWGG 2 cut(s) 462, 1122
Eco24I GRGCYC 2 cut(s) 110, 185
Eco53kI GAGCTC 2 cut(s) 108, 183
Eco57I CTGAAG 2 cut(s) 156, 348
Eco88I CYCGRG 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 108, 183
EcoT14I CCWWGG 2 cut(s) 462, 1122
EcoT38I GRGCYC 2 cut(s) 110, 185
ErhI CCWWGG 2 cut(s) 462, 1122
FaeI CATG 5 cut(s) 65, 154, 277, 395, 811
FalI AAGNNNNNCTT 4 cut(s) 920, 952, 1016, 1048
FaqI GGGAC 1 cut(s) 70
FatI CATG 5 cut(s) 61, 150, 273, 391, 807
FauI CCCGC 3 cut(s) 711, 851, 871
Fnu4HI GCNGC 6 cut(s) 396, 476, 479, 588, 907, 967
FokI GGATG 6 cut(s) 146, 392, 479, 662, 847, 1040
FriOI GRGCYC 2 cut(s) 110, 185
Fsp4HI GCNGC 6 cut(s) 396, 476, 479, 588, 907, 967
FspBI CTAG 5 cut(s) 243, 518, 615, 714, 824
GlaI GCGC 2 cut(s) 627, 1172
GluI GCNGC 6 cut(s) 396, 476, 479, 588, 907, 967
GsuI CTGGAG 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 629
HapII CCGG 2 cut(s) 598, 1007
HhaI GCGC 2 cut(s) 628, 1173
Hin1II CATG 5 cut(s) 65, 154, 277, 395, 811
Hin6I GCGC 2 cut(s) 626, 1171
HinP1I GCGC 2 cut(s) 626, 1171
HinfI GANTC 7 cut(s) 164, 239, 359, 512, 568, 933, 1053
HpaII CCGG 2 cut(s) 598, 1007
HphI GGTGA 3 cut(s) 482, 584, 962
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 5 cut(s) 262, 385, 432, 790, 926
Hpy188III TCNNGA 5 cut(s) 25, 37, 39, 55, 678
Hpy8I GTNNAC 1 cut(s) 562
Hpy99I CGWCG 2 cut(s) 529, 944
HpyAV CCTTC 4 cut(s) 631, 1018, 1129, 1188
HpyCH4III ACNGT 4 cut(s) 207, 271, 661, 831
HpyCH4IV ACGT 3 cut(s) 524, 888, 942
HpyCH4V TGCA 8 cut(s) 230, 277, 395, 556, 622, 691, 947, 1203
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 5 cut(s) 145, 330, 384, 755, 1044
HpySE526I ACGT 3 cut(s) 524, 888, 942
Hsp92II CATG 5 cut(s) 65, 154, 277, 395, 811
HspAI GCGC 2 cut(s) 626, 1171
KpnI GGTACC 1 cut(s) 1013
Kzo9I GATC 5 cut(s) 47, 116, 257, 759, 971
LguI GCTCTTC 1 cut(s) 1161
LmnI GCTCC 5 cut(s) 105, 188, 388, 491, 816
Lsp1109I GCAGC 6 cut(s) 407, 487, 490, 574, 918, 953
LweI GCATC 4 cut(s) 15, 273, 640, 1080
MaeI CTAG 5 cut(s) 243, 518, 615, 714, 824
MaeII ACGT 3 cut(s) 524, 888, 942
MaeIII GTNAC 1 cut(s) 85
MalI GATC 5 cut(s) 49, 118, 259, 761, 973
MbiI CCGCTC 1 cut(s) 494
MboI GATC 5 cut(s) 47, 116, 257, 759, 971
MflI RGATCY 3 cut(s) 257, 759, 971
MhlI GDGCHC 3 cut(s) 110, 185, 730
MluCI AATT 4 cut(s) 211, 547, 580, 897
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 2 cut(s) 794, 1064
MnlI CCTC 8 cut(s) 8, 69, 87, 256, 379, 416, 443, 1140
MroXI GAANNNNTTC 2 cut(s) 897, 1210
MseI TTAA 2 cut(s) 177, 1034
MspCI CTTAAG 1 cut(s) 1033
MspI CCGG 2 cut(s) 598, 1007
Mva1269I GAATGC 1 cut(s) 693
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 5 cut(s) 47, 116, 257, 759, 971
NlaIII CATG 5 cut(s) 65, 154, 277, 395, 811
NlaIV GGNNCC 2 cut(s) 1011, 1152
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 395
PaeI GCATGC 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 938
PciSI GCTCTTC 1 cut(s) 1161
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 1 cut(s) 693
PdmI GAANNNNTTC 2 cut(s) 897, 1210
PfeI GAWTC 6 cut(s) 164, 239, 359, 568, 933, 1053
Pfl23II CGTACG 1 cut(s) 735
PkrI GCNGC 6 cut(s) 397, 477, 480, 589, 908, 968
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp124BI GAGCTC 2 cut(s) 110, 185
PspLI CGTACG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 1011, 1152
PsuI RGATCY 3 cut(s) 257, 759, 971
RsaI GTAC 3 cut(s) 122, 737, 1011
RsaNI GTAC 3 cut(s) 121, 736, 1010
SacI GAGCTC 2 cut(s) 110, 185
SapI GCTCTTC 1 cut(s) 1161
SaqAI TTAA 2 cut(s) 177, 1034
SatI GCNGC 6 cut(s) 396, 476, 479, 588, 907, 967
Sau3AI GATC 5 cut(s) 47, 116, 257, 759, 971
SchI GAGTC 1 cut(s) 521
SduI GDGCHC 3 cut(s) 110, 185, 730
SfaNI GCATC 4 cut(s) 15, 273, 640, 1080
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 3 cut(s) 37, 295, 1033
SmoI CTYRAG 3 cut(s) 37, 295, 1033
SphI GCATGC 1 cut(s) 395
Sse9I AATT 4 cut(s) 211, 547, 580, 897
SsiI CCGC 6 cut(s) 168, 494, 718, 844, 864, 969
SspMI CTAG 5 cut(s) 243, 518, 615, 714, 824
SstI GAGCTC 2 cut(s) 110, 185
StyI CCWWGG 2 cut(s) 462, 1122
TaaI ACNGT 4 cut(s) 207, 271, 661, 831
TaiI ACGT 3 cut(s) 527, 891, 945
TaqI TCGA 6 cut(s) 38, 442, 566, 939, 1088, 1145
TasI AATT 4 cut(s) 211, 547, 580, 897
TfiI GAWTC 6 cut(s) 164, 239, 359, 568, 933, 1053
Tru1I TTAA 2 cut(s) 177, 1034
Tru9I TTAA 2 cut(s) 177, 1034
TscAI CASTG 2 cut(s) 16, 735
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 6 cut(s) 395, 475, 478, 587, 906, 966
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 4 cut(s) 150, 993, 1179, 1203
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 2 cut(s) 16, 735
Vha464I CTTAAG 1 cut(s) 1033
XapI RAATTY 2 cut(s) 547, 580
XceI RCATGY 1 cut(s) 395
XhoI CTCGAG 1 cut(s) 37
XmnI GAANNNNTTC 2 cut(s) 897, 1210
XspI CTAG 5 cut(s) 243, 518, 615, 714, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.