FvH4_2g34980

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Forward (+)
25880375 .. 25881808
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34980.t1

Sequence Viewer

Length: 1104 bp
ATGGGGAAACAATTGGGGAGAATCCGTTTGCTTTGTCACGAAGAACTTGGCCTAATCCTCGCCCAGCTCACCGACCCAGGTGACAGAATAACCTTTTCCCAAGTCTGCAAGGAATGGTTTCAACTCGAGGCTCTACACCGATCATCACTCCGTCTTCTCCGACACCAATTCCTCCGCCAGGTACTCCCTAGATTCCCCAATTTACTCACATTCCAAACCTCCGAGCACATCACCGACCCTGACCTCGAATTTATAGCCCAAACATGTCCCCAACTCGAGACCATTGACCTTACCACGTCGGGTCATAAACCCTTCTGTCTCTTGGGGTTTGGTCTCGTGGAGCTGGCAAATAGATGTCCGAAACTATCTAAGGTCTTGCTTAAGAGAAGAAGGTCTATTACTGACCATGTAATTGTTTCGTTCATAAAGTTTGCCCCGAATTTGGTACATTTGGATTTGGGAGGTTGTTATAGCATATCTGATAGAGCCCTCAAAGCAATTGGGTGTTGTGGTTCACTTAGGTATTTGGATTTGGAGTCGTGTGGTTTTACGGATCGTGGGTTGGGTTTTCTTGCAAATGGCTCTTGTTCGAAAACGTTGAAGACATTGATACTAGCTTGGTGTAAGGGAATTACTGATGTTGGGGTGTCACGGTTGCAGAAAATGCAATGCTTGGAGCACCTGAGTTTGTGTAACAGTTCGCGGCACAAAATCACAGACATTGGGGGTTTGGAAATCTCGGCCATTAAGACACTTAGGACATTGAACTTGGCTGCGTTGGCTAAACTGTCTAACCGCACAGTTGCTGCATTGGCTGAGAATTGCCCCAATTTGGAGGTGCTTGATGTAAGTGAATGTAGGTTGCTAACTGGAGCTGGTATCCGTGCATTTAGGGGTCATGTGTGCTTGGAAACTATTGTTTTGCATCGTCTTCATCAAGTTCATGCGTCTGATTTGGAACACTTGGTGCTTGGATGTCCAGCATTGAAGAGTATATTTGTTCATGGTGAGGAGAGTTTAAGTGAGATATTGCCCCTGATGCAAGAGCGCACTCGAAGATTCGTGAGGATGGGTAGTGCTTTTCCAACCTATTCTTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

368

Amino Acids

40.89

Weight (kDa)

8.9

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 16 - 48 9.3e-08 F-box
DUF7885 PF25372 77 - 298 2.4e-16 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 703
AciI CCGC 3 cut(s) 175, 703, 796
AclI AACGTT 1 cut(s) 596
AclWI GGATC 1 cut(s) 561
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 2 cut(s) 248, 439
AdeI CACNNNGTG 1 cut(s) 967
AfaI GTAC 2 cut(s) 183, 447
AfiI CCNNNNNNNGG 3 cut(s) 178, 442, 832
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 5 cut(s) 122, 601, 766, 988, 1098
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 2 cut(s) 76, 177
AjuI GAANNNNNNNTTGG 1 cut(s) 1078
AluBI AGCT 4 cut(s) 67, 343, 617, 875
AluI AGCT 4 cut(s) 67, 343, 617, 875
Alw21I GWGCWC 2 cut(s) 228, 681
Alw26I GTCTC 3 cut(s) 272, 323, 338
AlwI GGATC 1 cut(s) 561
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 2 cut(s) 125, 275
AoxI GGCC 2 cut(s) 49, 741
ApeKI GCWGC 2 cut(s) 773, 806
ApoI RAATTY 2 cut(s) 248, 439
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 1050
AsuHPI GGTGA 4 cut(s) 61, 92, 223, 1019
AsuII TTCGAA 1 cut(s) 590
AvaI CYCGRG 2 cut(s) 125, 275
BanII GRGCYC 1 cut(s) 490
BarI GAAGNNNNNNTAC 2 cut(s) 382, 414
BauI CACGAG 1 cut(s) 335
BbsI GAAGAC 3 cut(s) 146, 608, 923
Bbv12I GWGCWC 2 cut(s) 228, 681
BbvI GCAGC 2 cut(s) 760, 793
BccI CCATC 1 cut(s) 1063
BciT130I CCWGG 2 cut(s) 78, 179
BciVI GTATCC 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 272, 323, 338
BfaI CTAG 2 cut(s) 189, 614
BfrI CTTAAG 1 cut(s) 380
BfuI GTATCC 1 cut(s) 890
BisI GCNGC 3 cut(s) 704, 774, 807
BlsI GCNGC 3 cut(s) 705, 775, 808
Bme1390I CCNGG 2 cut(s) 78, 179
BmeT110I CYCGRG 2 cut(s) 125, 275
BmgBI CACGTC 1 cut(s) 297
BmrFI CCNGG 2 cut(s) 78, 179
BmsI GCATC 2 cut(s) 934, 1029
BpiI GAAGAC 3 cut(s) 146, 608, 923
BpmI CTGGAG 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 590
BsaI GGTCTC 2 cut(s) 272, 338
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 442, 832
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 2 cut(s) 78, 179
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 980, 1074
BseLI CCNNNNNNNGG 3 cut(s) 178, 442, 832
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 2 cut(s) 674, 807
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 1 cut(s) 1025
BseXI GCAGC 2 cut(s) 760, 793
BseYI CCCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 703
BshFI GGCC 2 cut(s) 51, 743
BsiHKAI GWGCWC 2 cut(s) 228, 681
BsiHKCI CYCGRG 2 cut(s) 125, 275
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 3 cut(s) 178, 442, 832
BsmAI GTCTC 3 cut(s) 272, 323, 338
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 2 cut(s) 51, 743
Bso31I GGTCTC 2 cut(s) 272, 338
BsoBI CYCGRG 2 cut(s) 125, 275
Bsp119I TTCGAA 1 cut(s) 590
Bsp1286I GDGCHC 3 cut(s) 228, 490, 681
Bsp143I GATC 2 cut(s) 140, 553
BspACI CCGC 3 cut(s) 175, 703, 796
BspANI GGCC 2 cut(s) 51, 743
BspCNI CTCAG 2 cut(s) 675, 808
BspFNI CGCG 1 cut(s) 703
BspPI GGATC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 590
BspTI CTTAAG 1 cut(s) 380
BspTNI GGTCTC 2 cut(s) 272, 338
BsrDI GCAATG 1 cut(s) 674
BsrI ACTGG 1 cut(s) 874
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 140, 553
BssSI CACGAG 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 78, 179
Bst4CI ACNGT 4 cut(s) 654, 698, 789, 802
Bst6I CTCTTC 1 cut(s) 983
BstAFI CTTAAG 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 664
BstBI TTCGAA 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 5 cut(s) 369, 518, 683, 755, 816
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 980, 1074
BstFNI CGCG 1 cut(s) 703
BstHHI GCGC 1 cut(s) 1050
BstKTI GATC 2 cut(s) 143, 556
BstMAI GTCTC 3 cut(s) 272, 323, 338
BstMBI GATC 2 cut(s) 140, 553
BstMWI GCNNNNNNNGC 5 cut(s) 494, 664, 779, 812, 1039
BstNI CCWGG 2 cut(s) 78, 179
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 76, 177
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 760, 793
BstV2I GAAGAC 3 cut(s) 146, 608, 923
BsuI GTATCC 1 cut(s) 890
BsuRI GGCC 2 cut(s) 51, 743
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 2 cut(s) 980, 1074
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 1 cut(s) 1050
CseI GACGC 1 cut(s) 936
Csp6I GTAC 2 cut(s) 182, 446
CviAII CATG 5 cut(s) 264, 407, 899, 944, 1004
CviQI GTAC 2 cut(s) 182, 446
DdeI CTNAG 5 cut(s) 369, 518, 683, 755, 816
DpnI GATC 2 cut(s) 142, 555
DpnII GATC 2 cut(s) 140, 553
DraIII CACNNNGTG 1 cut(s) 967
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 1 cut(s) 983
EarI CTCTTC 1 cut(s) 983
EciI GGCGGA 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 490
Eco31I GGTCTC 2 cut(s) 272, 338
Eco88I CYCGRG 2 cut(s) 125, 275
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 76, 177
EcoT38I GRGCYC 1 cut(s) 490
FaeI CATG 5 cut(s) 267, 410, 902, 947, 1007
FaqI GGGAC 1 cut(s) 252
FatI CATG 5 cut(s) 263, 406, 898, 943, 1003
Fnu4HI GCNGC 3 cut(s) 704, 774, 807
FokI GGATG 2 cut(s) 987, 1081
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 3 cut(s) 704, 774, 807
FspBI CTAG 2 cut(s) 189, 614
GlaI GCGC 1 cut(s) 1049
GluI GCNGC 3 cut(s) 704, 774, 807
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 2 cut(s) 51, 743
HgaI GACGC 1 cut(s) 936
HhaI GCGC 1 cut(s) 1050
Hin1II CATG 5 cut(s) 267, 410, 902, 947, 1007
Hin6I GCGC 1 cut(s) 1048
HinP1I GCGC 1 cut(s) 1048
HinfI GANTC 4 cut(s) 21, 192, 536, 1059
HphI GGTGA 4 cut(s) 61, 92, 223, 1019
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 5 cut(s) 161, 223, 360, 481, 952
Hpy188III TCNNGA 3 cut(s) 38, 277, 1063
Hpy8I GTNNAC 1 cut(s) 515
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 322, 384
HpyCH4III ACNGT 4 cut(s) 654, 698, 789, 802
HpyCH4IV ACGT 2 cut(s) 296, 596
HpyCH4V TGCA 8 cut(s) 108, 575, 658, 667, 809, 887, 925, 1042
HpyF10VI GCNNNNNNNGC 5 cut(s) 494, 664, 779, 812, 1039
HpyF3I CTNAG 5 cut(s) 369, 518, 683, 755, 816
HpySE526I ACGT 2 cut(s) 296, 596
Hsp92II CATG 5 cut(s) 267, 410, 902, 947, 1007
HspAI GCGC 1 cut(s) 1048
Kzo9I GATC 2 cut(s) 140, 553
LmnI GCTCC 3 cut(s) 340, 676, 872
Lsp1109I GCAGC 2 cut(s) 760, 793
LweI GCATC 2 cut(s) 934, 1029
MaeI CTAG 2 cut(s) 189, 614
MaeII ACGT 2 cut(s) 296, 596
MaeIII GTNAC 4 cut(s) 35, 80, 648, 692
MalI GATC 2 cut(s) 142, 555
MboI GATC 2 cut(s) 140, 553
MboII GAAGA 8 cut(s) 53, 146, 399, 613, 923, 1000, 1068, 1086
MfeI CAATTG 2 cut(s) 11, 498
MhlI GDGCHC 3 cut(s) 228, 490, 681
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 3 cut(s) 381, 747, 1019
MspCI CTTAAG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 78, 179
MunI CAATTG 2 cut(s) 11, 498
MvaI CCWGG 2 cut(s) 78, 179
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 5 cut(s) 494, 664, 779, 812, 1039
NdeII GATC 2 cut(s) 140, 553
NlaIII CATG 5 cut(s) 267, 410, 902, 947, 1007
NmeAIII GCCGAG 1 cut(s) 719
NmuCI GTSAC 3 cut(s) 35, 80, 648
NspI RCATGY 1 cut(s) 267
NspV TTCGAA 1 cut(s) 590
PaeR7I CTCGAG 2 cut(s) 125, 275
PciI ACATGT 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 21, 192, 1059
PkrI GCNGC 3 cut(s) 705, 775, 808
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PscI ACATGT 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 76, 177
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 2 cut(s) 76, 177
PspXI VCTCGAGB 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 2 cut(s) 183, 447
RsaNI GTAC 2 cut(s) 182, 446
SaqAI TTAA 3 cut(s) 381, 747, 1019
SatI GCNGC 3 cut(s) 704, 774, 807
Sau3AI GATC 2 cut(s) 140, 553
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 2 cut(s) 78, 179
SduI GDGCHC 3 cut(s) 228, 490, 681
SfaNI GCATC 2 cut(s) 934, 1029
Sfr274I CTCGAG 2 cut(s) 125, 275
SfuI TTCGAA 1 cut(s) 590
SlaI CTCGAG 2 cut(s) 125, 275
SmlI CTYRAG 3 cut(s) 125, 275, 380
SmoI CTYRAG 3 cut(s) 125, 275, 380
SsiI CCGC 3 cut(s) 175, 703, 796
SspMI CTAG 2 cut(s) 189, 614
StyD4I CCNGG 2 cut(s) 76, 177
TaaI ACNGT 4 cut(s) 654, 698, 789, 802
TaiI ACGT 2 cut(s) 299, 599
TaqI TCGA 5 cut(s) 126, 246, 276, 590, 1054
TauI GCSGC 1 cut(s) 706
TfiI GAWTC 3 cut(s) 21, 192, 1059
Tru1I TTAA 3 cut(s) 381, 747, 1019
Tru9I TTAA 3 cut(s) 381, 747, 1019
TseFI GTSAC 3 cut(s) 35, 80, 648
TseI GCWGC 2 cut(s) 773, 806
Tsp45I GTSAC 3 cut(s) 35, 80, 648
TspDTI ATGAA 4 cut(s) 412, 923, 932, 992
TspGWI ACGGA 4 cut(s) 14, 140, 566, 872
Vha464I CTTAAG 1 cut(s) 380
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 2 cut(s) 248, 439
XceI RCATGY 1 cut(s) 267
XhoI CTCGAG 2 cut(s) 125, 275
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 2 cut(s) 189, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.