Rorug06G0348200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000358
Physical Location & Seq
Reverse (-)
49857214 .. 49857945
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0348200.1

Sequence Viewer

Length: 324 bp
ATGGCCTTTAACTACATTGAGGGAAGTTCTTGCTATCCTGTGATTGTGGAAACTGATGCACTGGTAGTACATCGTCAGCTCACTGATTATGGAGACTCAAATTTTTCTGTCTTAGGCAGATTGTATGATGAATTTGCTGTGTTTCTTGCTGAAGATCGGGCTGTGAAGGTAGTCCATGTGAAACGAGATGCCAATCATGTTGCGCATCTGATAGCAGCACATGCTGCAAGTGTTAGTGAAGATTTTTTGTTTTTTAATACTCCTTCCTTCTTATCTGCTGCTATTGCAGCTGATTTGAACACTATGCAATTTTCCATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

107

Amino Acids

11.86

Weight (kDa)

4.89

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 13 - 75 6.7e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AcsI RAATTY 2 cut(s) 100, 131
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 69
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 2 cut(s) 79, 290
AluI AGCT 2 cut(s) 79, 290
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 215, 224, 278, 287
ApoI RAATTY 2 cut(s) 100, 131
AspLEI GCGC 1 cut(s) 205
BbvI GCAGC 4 cut(s) 211, 227, 265, 299
BcoDI GTCTC 1 cut(s) 87
BisI GCNGC 4 cut(s) 216, 225, 279, 288
BlsI GCNGC 4 cut(s) 217, 226, 280, 289
BmsI GCATC 3 cut(s) 46, 178, 214
BsaBI GATNNNNATC 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 192
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 4 cut(s) 211, 227, 265, 299
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 66
BssMI GATC 1 cut(s) 154
BstAPI GCANNNNNTGC 2 cut(s) 221, 224
BstDEI CTNAG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 221, 224, 284, 287
BstNSI RCATGY 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 211, 227, 265, 299
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 59, 81
CfoI GCGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 68
CviAII CATG 3 cut(s) 176, 197, 221
CviJI RGCY 4 cut(s) 5, 79, 161, 290
CviKI_1 RGCY 4 cut(s) 5, 79, 161, 290
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 112
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 171
FaeI CATG 3 cut(s) 179, 200, 224
FaiI YATR 7 cut(s) 90, 126, 177, 198, 222, 305, 317
FatI CATG 3 cut(s) 175, 196, 220
Fnu4HI GCNGC 4 cut(s) 216, 225, 279, 288
Fsp4HI GCNGC 4 cut(s) 216, 225, 279, 288
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 1 cut(s) 204
GluI GCNGC 4 cut(s) 216, 225, 279, 288
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 205
Hin1II CATG 3 cut(s) 179, 200, 224
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 210
HpyAV CCTTC 3 cut(s) 160, 273, 277
HpyCH4V TGCA 4 cut(s) 59, 227, 287, 307
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 224, 284, 287
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 3 cut(s) 179, 200, 224
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 2 cut(s) 47, 51
Lsp1109I GCAGC 4 cut(s) 211, 227, 265, 299
LweI GCATC 3 cut(s) 46, 178, 214
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 164, 251
MluCI AATT 3 cut(s) 100, 131, 308
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 1 cut(s) 13
MseI TTAA 3 cut(s) 9, 255, 322
MspA1I CMGCKG 1 cut(s) 290
MwoI GCNNNNNNNGC 4 cut(s) 221, 224, 284, 287
NdeII GATC 1 cut(s) 154
NlaIII CATG 3 cut(s) 179, 200, 224
NsbI TGCGCA 1 cut(s) 204
NspI RCATGY 1 cut(s) 224
PkrI GCNGC 4 cut(s) 217, 226, 280, 289
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 3 cut(s) 9, 255, 322
SatI GCNGC 4 cut(s) 216, 225, 279, 288
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 89
SetI ASST 3 cut(s) 81, 171, 292
SfaNI GCATC 3 cut(s) 46, 178, 214
Sse9I AATT 3 cut(s) 100, 131, 308
TasI AATT 3 cut(s) 100, 131, 308
TatI WGTACW 1 cut(s) 67
Tru1I TTAA 3 cut(s) 9, 255, 322
Tru9I TTAA 3 cut(s) 9, 255, 322
TscAI CASTG 2 cut(s) 66, 88
TseI GCWGC 4 cut(s) 215, 224, 278, 287
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 2 cut(s) 66, 88
XapI RAATTY 2 cut(s) 100, 131
XceI RCATGY 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.