Rmu_sc0022075.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022075.1
OG0000358
Physical Location & Seq
Forward (+)
598 .. 1143
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022075.1_g000001.1.cds

Sequence Viewer

Length: 546 bp
atgataggagacgacgaactcggcctagtcctgaggcgggtaaccgagccagctgatagaaaatcggcctctcaggtctgcaagcgatggtgggtaatggagggtctgagccgatcgtcactccgagttgtcaacatggatcatcttcctcgattactagctaggtatccaaacttagccacattcgaaacacccaagcgaatgagcaatgccgatctcgcattggtggcccaatcatgccccaaactggaggccttcaaacttggtccgactattgcggaaattgaaatgcaagacatccgcgcactggtacgatatgaattagaattagcgatctctgttgatgaagtaagggagatattacgggtggttcatcaagttggggaccaaggtttgtgcgctttggcaaatgggtgtcccaaattgtccgagattgtgcttaagaggagaagggttcccaatcatggccatgatcacttcagcagcacatcacttgactcatttggatttggaacattgttcttcggtttcggaccaagcccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

181

Amino Acids

20.24

Weight (kDa)

7.73

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 303
AciI CCGC 3 cut(s) 37, 278, 301
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 463
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 4 cut(s) 37, 247, 307, 464
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 259, 287
AluBI AGCT 2 cut(s) 53, 161
AluI AGCT 2 cut(s) 53, 161
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 147
AoxI GGCC 5 cut(s) 22, 66, 228, 252, 466
ApeKI GCWGC 1 cut(s) 483
AspLEI GCGC 2 cut(s) 305, 401
AspS9I GGNCC 4 cut(s) 229, 266, 385, 533
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 3 cut(s) 266, 385, 533
AxyI CCTNAGG 1 cut(s) 32
BalI TGGCCA 1 cut(s) 468
BbvI GCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 81
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 3 cut(s) 26, 158, 162
BfrI CTTAAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 1 cut(s) 484
BlsI GCNGC 1 cut(s) 485
Bme18I GGWCC 3 cut(s) 266, 385, 533
BmgT120I GGNCC 4 cut(s) 229, 266, 385, 533
BmiI GGNNCC 2 cut(s) 386, 456
BpmI CTGGAG 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 388
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 247, 307, 464
Bse1I ACTGG 2 cut(s) 252, 312
Bse21I CCTNAGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 4 cut(s) 37, 247, 307, 464
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 23, 86, 98
BseNI ACTGG 2 cut(s) 252, 312
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 5 cut(s) 24, 68, 230, 254, 468
BsiEI CGRYCG 1 cut(s) 116
BslFI GGGAC 2 cut(s) 398, 402
BslI CCNNNNNNNGG 4 cut(s) 37, 247, 307, 464
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 398, 402
BsnI GGCC 5 cut(s) 24, 68, 230, 254, 468
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 5 cut(s) 113, 139, 214, 333, 472
BspACI CCGC 3 cut(s) 37, 278, 301
BspANI GGCC 5 cut(s) 24, 68, 230, 254, 468
BspCNI CTCAG 3 cut(s) 24, 85, 99
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 386, 456
BspPI GGATC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 2 cut(s) 252, 312
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 5 cut(s) 113, 139, 214, 333, 472
BssT1I CCWWGG 1 cut(s) 388
BstAFI CTTAAG 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 51, 83
BstDEI CTNAG 4 cut(s) 32, 72, 107, 175
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 2 cut(s) 305, 401
BstKTI GATC 5 cut(s) 116, 142, 217, 336, 475
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 5 cut(s) 113, 139, 214, 333, 472
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 218, 227
BstPI GGTNACC 1 cut(s) 40
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 32
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 5 cut(s) 24, 68, 230, 254, 468
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 51, 83
CfoI GCGC 2 cut(s) 305, 401
Cfr13I GGNCC 4 cut(s) 229, 266, 385, 533
Csp6I GTAC 1 cut(s) 311
CviAII CATG 4 cut(s) 136, 237, 464, 470
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 4 cut(s) 32, 72, 107, 175
DpnI GATC 5 cut(s) 115, 141, 216, 335, 474
DpnII GATC 5 cut(s) 113, 139, 214, 333, 472
EaeI YGGCCR 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 254
Eco47I GGWCC 3 cut(s) 266, 385, 533
Eco57I CTGAAG 1 cut(s) 463
Eco81I CCTNAGG 1 cut(s) 32
Eco91I GGTNACC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 4 cut(s) 139, 240, 467, 473
FaiI YATR 5 cut(s) 137, 238, 318, 465, 471
FaqI GGGAC 2 cut(s) 398, 402
FatI CATG 4 cut(s) 135, 236, 463, 469
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 484
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 484
FspBI CTAG 3 cut(s) 26, 158, 162
GlaI GCGC 2 cut(s) 304, 400
GluI GCNGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 5 cut(s) 24, 68, 230, 254, 468
HhaI GCGC 2 cut(s) 305, 401
Hin1II CATG 4 cut(s) 139, 240, 467, 473
Hin6I GCGC 2 cut(s) 303, 399
HinP1I GCGC 2 cut(s) 303, 399
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 5 cut(s) 108, 125, 270, 430, 533
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 265, 444
HpyCH4V TGCA 2 cut(s) 81, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 227
HpyF3I CTNAG 4 cut(s) 32, 72, 107, 175
Hsp92II CATG 4 cut(s) 139, 240, 467, 473
HspAI GCGC 2 cut(s) 303, 399
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 113, 139, 214, 333, 472
LpnPI CCDG 5 cut(s) 44, 59, 63, 233, 293
Lsp1109I GCAGC 1 cut(s) 495
MaeI CTAG 3 cut(s) 26, 158, 162
MaeIII GTNAC 2 cut(s) 40, 117
MalI GATC 5 cut(s) 115, 141, 216, 335, 474
MboI GATC 5 cut(s) 113, 139, 214, 333, 472
MboII GAAGA 2 cut(s) 137, 514
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 4 cut(s) 282, 320, 326, 422
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 6 cut(s) 27, 79, 94, 159, 244, 438
Mox20I TGGCCA 1 cut(s) 468
MscI TGGCCA 1 cut(s) 468
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 468
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 53
MspCI CTTAAG 1 cut(s) 440
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 218, 227
NdeII GATC 5 cut(s) 113, 139, 214, 333, 472
NlaIII CATG 4 cut(s) 139, 240, 467, 473
NlaIV GGNNCC 2 cut(s) 386, 456
NmuCI GTSAC 1 cut(s) 117
NspV TTCGAA 1 cut(s) 186
PceI AGGCCT 1 cut(s) 254
PkrI GCNGC 1 cut(s) 485
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PspEI GGTNACC 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 386, 456
PspPI GGNCC 4 cut(s) 229, 266, 385, 533
PvuI CGATCG 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 484
Sau3AI GATC 5 cut(s) 113, 139, 214, 333, 472
Sau96I GGNCC 4 cut(s) 229, 266, 385, 533
SchI GAGTC 1 cut(s) 491
SetI ASST 5 cut(s) 55, 78, 163, 167, 394
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 3 cut(s) 266, 385, 533
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 282, 320, 326, 422
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 3 cut(s) 37, 278, 301
SspMI CTAG 3 cut(s) 26, 158, 162
StuI AGGCCT 1 cut(s) 254
StyI CCWWGG 1 cut(s) 388
TaqI TCGA 2 cut(s) 151, 186
TasI AATT 4 cut(s) 282, 320, 326, 422
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 333, 360, 362
TspRI CASTG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 3 cut(s) 266, 385, 533
XspI CTAG 3 cut(s) 26, 158, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.