FvH4_2g34990

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Forward (+)
25885225 .. 25886706
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34990.t1

Sequence Viewer

Length: 1077 bp
ATGGCGAAGAAATTGGGGAAAGTTTCTTTGCTTTGCGACGAAGAACTTGCCCTAATCCTCACCAAGCTTCTCGACCCATCTGATCGAAAATCCTTCTCCCAAGTCTGCAAGCAATGGCTTCGCGTCGAGGGTCTCAACCGCTCATCCATTCGTTTTCTCCGACCCGATTTTCTCCGTCAGGCACTCCCTAGGTTCCCAAACATCGTCACATTCGAAACACCCAACTCAATCTCCGACACCGATCTCGAGTTCATCTCCCAGACATGTCCGAAGATCGAGGTCCTCAACCTTAATTTGGTGACGACATCGTTGGATCTCGGTCTCAAATGTTTAGGTCTCCCCGCTTTGGCAAACGGGTGTCCGAAATTGTCCAAGGTTATACTCACGGGTAGAAGCTCTATTACTGATCAGATATCTGTTTCGCTTATAAACTTGGCTAAGAATTTGACGTATTTGGACTTGGGGTGTTGCTTAGAGGTGTCTGACAAGTCACTTGAAGCAATTGGGTTTTGTAGTTCGATTAGGTATTTGAGTTTGGAGTGGTGTTGTAAGATTACGGATAAAGGATTAGAGTTTCTTGCCAATGGGTCATGCTCGAAAACACTAAAGACATTGATACTTGCTTGGTGTGATAGGATTTCAGATTCTGGGGTATCGCATTTGCGGAGAATGCATTGCTTGGAACACTTGAGTTTGGCCAATTGCGGACGAGGACGAAAGATCACTGACACTGGAGGTGTGGCAATCTCGGCCATTTCGACCCTAAAGAAATTGAGCTTGGTTGCGCTGGTGAGAGTGACGGATCGCACCGTTGTTACTCTTGCTGAGAAGTGCATCAACTTGGAGGTTATTGATTTAAGTGATTGTAGGCTGACTGGAGCTAGTATTCGTGCATTTGCGAGGCACAAGTTGTTGCAATCTTTTGTGTTGCGATTTTGTAATGTCAGTGAGAATGATTTGGATCACTTGGTTAGTCGATGCAGATCATTGAAATCTGTTGTGCTGGATTCTGAGACCTTAAACCAGATTAGGCCTCGGCTGCGAAAAAGAGCTATTAAAGTTGTGACAGTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

359

Amino Acids

39.68

Weight (kDa)

9.13

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 13 - 48 1.6e-06 F-box
DUF7885 PF25372 112 - 303 1e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_At5g56370 PF24758 251 - 358 3.2e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 1 cut(s) 123
AciI CCGC 4 cut(s) 139, 342, 664, 705
AclWI GGATC 3 cut(s) 321, 810, 969
AcoI YGGCCR 2 cut(s) 696, 750
AcsI RAATTY 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 295, 346
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 497, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 5 cut(s) 67, 396, 777, 881, 1052
AluI AGCT 5 cut(s) 67, 396, 777, 881, 1052
Alw26I GTCTC 4 cut(s) 137, 326, 341, 1007
AlwI GGATC 3 cut(s) 321, 810, 969
AlwNI CAGNNNCTG 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 696, 750, 1031
ApeKI GCWGC 1 cut(s) 1039
ApoI RAATTY 1 cut(s) 442
AspA2I CCTAGG 1 cut(s) 188
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 52, 310, 802
AsuII TTCGAA 1 cut(s) 213
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 280
AvrII CCTAGG 1 cut(s) 188
BalI TGGCCA 1 cut(s) 698
BarI GAAGNNNNNNTAC 2 cut(s) 385, 417
BbvI GCAGC 1 cut(s) 1026
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 4 cut(s) 29, 63, 101, 135
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 4 cut(s) 137, 326, 341, 1007
BfaI CTAG 2 cut(s) 189, 882
BisI GCNGC 1 cut(s) 1040
BlnI CCTAGG 1 cut(s) 188
BlsI GCNGC 1 cut(s) 1041
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 194
BmsI GCATC 2 cut(s) 843, 968
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 2 cut(s) 753, 897
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 709
BsaBI GATNNNNATC 2 cut(s) 960, 982
BsaI GGTCTC 4 cut(s) 137, 326, 341, 1007
BsaJI CCNNGG 3 cut(s) 188, 372, 1034
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 346
Bse1I ACTGG 2 cut(s) 736, 880
Bse3DI GCAATG 2 cut(s) 119, 673
Bse8I GATNNNNATC 2 cut(s) 960, 982
BseDI CCNNGG 3 cut(s) 188, 372, 1034
BseGI GGATG 1 cut(s) 143
BseJI GATNNNNATC 2 cut(s) 960, 982
BseLI CCNNNNNNNGG 2 cut(s) 295, 346
BseMI GCAATG 2 cut(s) 119, 673
BseMII CTCAG 2 cut(s) 816, 1002
BseNI ACTGG 2 cut(s) 736, 880
BseXI GCAGC 1 cut(s) 1026
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 698, 752, 1033
BsiHKCI CYCGRG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 295, 346
BsmAI GTCTC 4 cut(s) 137, 326, 341, 1007
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 3 cut(s) 698, 752, 1033
Bso31I GGTCTC 4 cut(s) 137, 326, 341, 1007
BsoBI CYCGRG 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 213
Bsp143I GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
BspACI CCGC 4 cut(s) 139, 342, 664, 705
BspANI GGCC 3 cut(s) 698, 752, 1033
BspCNI CTCAG 2 cut(s) 817, 1003
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 3 cut(s) 321, 810, 969
BspT104I TTCGAA 1 cut(s) 213
BspTNI GGTCTC 4 cut(s) 137, 326, 341, 1007
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 2 cut(s) 119, 673
BsrI ACTGG 2 cut(s) 736, 880
BssECI CCNNGG 3 cut(s) 188, 372, 1034
BssMI GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
BssT1I CCWWGG 2 cut(s) 188, 372
Bst4CI ACNGT 2 cut(s) 811, 1069
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 4 cut(s) 438, 472, 825, 1011
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 9 cut(s) 85, 244, 276, 316, 409, 723, 805, 964, 986
BstMAI GTCTC 4 cut(s) 137, 326, 341, 1007
BstMBI GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
BstMWI GCNNNNNNNGC 3 cut(s) 670, 749, 1039
BstNSI RCATGY 1 cut(s) 267
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 1026
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 3 cut(s) 698, 752, 1033
BtsCI GGATG 1 cut(s) 143
BtsIMutI CAGTG 4 cut(s) 723, 729, 952, 1074
Cac8I GCNNGC 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 647
CfoI GCGC 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 280
CseI GACGC 1 cut(s) 112
CviAII CATG 2 cut(s) 264, 591
DdeI CTNAG 4 cut(s) 438, 472, 825, 1011
DpnI GATC 9 cut(s) 84, 243, 275, 315, 408, 722, 804, 963, 985
DpnII GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
EaeI YGGCCR 2 cut(s) 696, 750
Eco130I CCWWGG 2 cut(s) 188, 372
Eco147I AGGCCT 1 cut(s) 1033
Eco31I GGTCTC 4 cut(s) 137, 326, 341, 1007
Eco32I GATATC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 280
EcoRV GATATC 1 cut(s) 414
EcoT14I CCWWGG 2 cut(s) 188, 372
EcoT22I ATGCAT 1 cut(s) 675
ErhI CCWWGG 2 cut(s) 188, 372
FaeI CATG 2 cut(s) 267, 594
FaiI YATR 4 cut(s) 265, 380, 428, 592
FatI CATG 2 cut(s) 263, 590
FauI CCCGC 1 cut(s) 349
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 1040
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 1040
FspBI CTAG 2 cut(s) 189, 882
GlaI GCGC 1 cut(s) 786
GluI GCNGC 1 cut(s) 1040
GsuI CTGGAG 2 cut(s) 753, 897
HaeIII GGCC 3 cut(s) 698, 752, 1033
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 787
Hin1II CATG 2 cut(s) 267, 594
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 2 cut(s) 644, 1007
HphI GGTGA 3 cut(s) 52, 310, 802
Hpy188I TCNGA 9 cut(s) 82, 161, 235, 270, 363, 411, 484, 643, 1012
Hpy188III TCNNGA 2 cut(s) 71, 245
Hpy99I CGWCG 2 cut(s) 41, 128
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 811, 1069
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 6 cut(s) 108, 673, 834, 893, 916, 981
HpyF10VI GCNNNNNNNGC 3 cut(s) 670, 749, 1039
HpyF3I CTNAG 4 cut(s) 438, 472, 825, 1011
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 2 cut(s) 267, 594
HspAI GCGC 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
LmnI GCTCC 1 cut(s) 878
LpnPI CCDG 8 cut(s) 164, 272, 633, 717, 773, 861, 989, 1037
Lsp1109I GCAGC 1 cut(s) 1026
LweI GCATC 2 cut(s) 843, 968
MaeI CTAG 2 cut(s) 189, 882
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 6 cut(s) 205, 298, 489, 796, 814, 1063
MalI GATC 9 cut(s) 84, 243, 275, 315, 408, 722, 804, 963, 985
MbiI CCGCTC 1 cut(s) 141
MboI GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
MboII GAAGA 3 cut(s) 19, 53, 283
MfeI CAATTG 2 cut(s) 501, 700
MflI RGATCY 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 698
MluCI AATT 7 cut(s) 11, 292, 365, 442, 501, 700, 770
MluNI TGGCCA 1 cut(s) 698
MmeI TCCRAC 3 cut(s) 184, 258, 291
Mox20I TGGCCA 1 cut(s) 698
Mph1103I ATGCAT 1 cut(s) 675
MscI TGGCCA 1 cut(s) 698
MseI TTAA 4 cut(s) 291, 857, 1019, 1056
Msp20I TGGCCA 1 cut(s) 698
MunI CAATTG 2 cut(s) 501, 700
Mva1269I GAATGC 1 cut(s) 675
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 670, 749, 1039
NdeII GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
NlaIII CATG 2 cut(s) 267, 594
NlaIV GGNNCC 1 cut(s) 194
NmeAIII GCCGAG 2 cut(s) 728, 1015
NmuCI GTSAC 5 cut(s) 205, 298, 489, 796, 1063
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 267
NspV TTCGAA 1 cut(s) 213
PaeR7I CTCGAG 1 cut(s) 245
PceI AGGCCT 1 cut(s) 1033
PciI ACATGT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 3 cut(s) 157, 210, 755
PctI GAATGC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 644, 1007
PkrI GCNGC 1 cut(s) 1041
PpuMI RGGWCCY 1 cut(s) 280
PscI ACATGT 1 cut(s) 263
PsiI TTATAA 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 313
SaqAI TTAA 4 cut(s) 291, 857, 1019, 1056
SatI GCNGC 1 cut(s) 1040
Sau3AI GATC 9 cut(s) 82, 241, 273, 313, 406, 720, 802, 961, 983
Sau96I GGNCC 1 cut(s) 280
SfaNI GCATC 2 cut(s) 843, 968
Sfr274I CTCGAG 1 cut(s) 245
SfuI TTCGAA 1 cut(s) 213
SinI GGWCC 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 245, 688
SmoI CTYRAG 2 cut(s) 245, 688
Sse9I AATT 7 cut(s) 11, 292, 365, 442, 501, 700, 770
SseBI AGGCCT 1 cut(s) 1033
SsiI CCGC 4 cut(s) 139, 342, 664, 705
SspMI CTAG 2 cut(s) 189, 882
StuI AGGCCT 1 cut(s) 1033
StyI CCWWGG 2 cut(s) 188, 372
TaaI ACNGT 2 cut(s) 811, 1069
TaiI ACGT 1 cut(s) 452
TaqII GACCGA 1 cut(s) 308
TasI AATT 7 cut(s) 11, 292, 365, 442, 501, 700, 770
TfiI GAWTC 2 cut(s) 644, 1007
Tru1I TTAA 4 cut(s) 291, 857, 1019, 1056
Tru9I TTAA 4 cut(s) 291, 857, 1019, 1056
TscAI CASTG 4 cut(s) 730, 736, 952, 1074
TseFI GTSAC 5 cut(s) 205, 298, 489, 796, 1063
TseI GCWGC 1 cut(s) 1039
Tsp45I GTSAC 5 cut(s) 205, 298, 489, 796, 1063
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 3 cut(s) 164, 572, 815
TspRI CASTG 4 cut(s) 730, 736, 952, 1074
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 267
XhoI CTCGAG 1 cut(s) 245
XmaJI CCTAGG 1 cut(s) 188
XspI CTAG 2 cut(s) 189, 882
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.