FvH4_2g32511

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Reverse (-)
24630344 .. 24631310
967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32511.t1

Sequence Viewer

Length: 843 bp
ATGGTTCACACTGGAGGGTCTAACCAGAAGGTCACTCACTTTACTCCGACTCAGTTTTCTCCGTCAGAATTCTTAGCAATGTTTTTTCCGACCAACGGTCTGTCAAGTGGCGGCGGCCTTCCGAAATTGTTCGAGGTTTCGTTCAGTGGGAGAAGGCTTGTAAGCATTGAGAGGTGGCTACATAAGTTGGCTCATGAGAACTTGACTTATTTGGATTTGGGATTGTGCAGGGTGGTCGATAACGATGCGGTTGAAGCAATTGGGCGACTATGCACTCGTTTGAGCTATTTGAATTTAAAATATGCCGAGATTTCGGACAATGGTTTGAGATTGTTGGCACAGGGAAGGTGCTCAAAAACCCTTAACACATTGGTGCTTGCTCAATGCTATGATATAACAGACTCCGGGTTCTGTCATTTGCAGAATTTGCAATGCTTGGAAGAGCTGGATTTGGAAAGCTGCGGGTACCGAACTGGTGTCACTGATAGTGGAGTTATAGCTGCAGTTTCTGGTAATCGATCCCGCAAGAAGTTGAACTTGGGCAGGCTGACGAATGTGTCGGACCAAAGCATAGTGTTTGTTGCTGGGAATTGCCCCAACTTAGAGATTCTTGATTTAAGTGGTTCCTATGTAACTGGCGCCGGAGTTCGTGCATTTTCTGGTCACAGGTGTCTGCAGTCTCTTGATTTGCGCATGTGTAGTGAATTTAGGTTGTCCGATATCGAGCACATGGTGCTTGGATGCCAGTCACTCAAGTCTATCGTCCTGTCTAATATGATCAAAGAAACCATTCCTGAAAGCCTTAGCAGAATTGTGAAGTTTGCTGATGAGTTGTGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like IQ LRR_6 WW

Protein Analysis

281

Amino Acids

30.86

Weight (kDa)

6.65

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 42 - 192 3.2e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 556
Acc16I TGCGCA 1 cut(s) 692
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 2 cut(s) 465, 638
AciI CCGC 5 cut(s) 111, 114, 248, 462, 523
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 4 cut(s) 68, 292, 424, 704
AcyI GRCGYC 1 cut(s) 639
AdeI CACNNNGTG 1 cut(s) 733
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 254, 292, 535
AhdI GACNNNNNGTC 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 4 cut(s) 285, 445, 459, 500
AluI AGCT 4 cut(s) 285, 445, 459, 500
Alw21I GWGCWC 2 cut(s) 353, 729
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 459, 500
ApoI RAATTY 4 cut(s) 68, 292, 424, 704
Asp700I GAANNNNTTC 2 cut(s) 128, 789
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 2 cut(s) 641, 693
AspS9I GGNCC 1 cut(s) 562
AsuC2I CCSGG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 562
BanI GGYRCC 2 cut(s) 465, 638
Bbv12I GWGCWC 2 cut(s) 353, 729
BbvI GCAGC 2 cut(s) 446, 487
BcgI CGANNNNNNTGC 4 cut(s) 217, 227, 251, 261
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 684
BfmI CTRYAG 2 cut(s) 501, 674
BfoI RGCGCY 1 cut(s) 642
BisI GCNGC 4 cut(s) 112, 115, 460, 501
BlsI GCNGC 4 cut(s) 113, 116, 461, 502
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 562
BmeRI GACNNNNNGTC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 3 cut(s) 467, 625, 640
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 2 cut(s) 235, 731
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 737
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 517
BsaHI GRCGYC 1 cut(s) 639
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 4 cut(s) 16, 478, 640, 745
Bse3DI GCAATG 2 cut(s) 84, 437
BseCI ATCGAT 1 cut(s) 517
BseGI GGATG 1 cut(s) 746
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 2 cut(s) 84, 437
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 4 cut(s) 16, 478, 640, 745
BseXI GCAGC 2 cut(s) 446, 487
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 2 cut(s) 465, 638
BshVI ATCGAT 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 353, 729
BsiSI CCGG 2 cut(s) 405, 642
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 684
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 353, 729
Bsp143I GATC 2 cut(s) 518, 777
BspACI CCGC 5 cut(s) 111, 114, 248, 462, 523
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 64
BspDI ATCGAT 1 cut(s) 517
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 467, 625, 640
BspMAI CTGCAG 2 cut(s) 505, 678
BspPI GGATC 1 cut(s) 513
BspQI GCTCTTC 1 cut(s) 435
BspT107I GGYRCC 2 cut(s) 465, 638
BsrDI GCAATG 2 cut(s) 84, 437
BsrI ACTGG 4 cut(s) 16, 478, 640, 745
BssMI GATC 2 cut(s) 518, 777
BssNI GRCGYC 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 639
BstAPI GCANNNNNTGC 2 cut(s) 427, 733
BstC8I GCNNGC 2 cut(s) 378, 545
BstDEI CTNAG 4 cut(s) 51, 73, 601, 803
BstF5I GGATG 1 cut(s) 746
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 2 cut(s) 641, 693
BstKTI GATC 2 cut(s) 521, 780
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 2 cut(s) 518, 777
BstMWI GCNNNNNNNGC 3 cut(s) 254, 427, 733
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 2 cut(s) 501, 674
BstV1I GCAGC 2 cut(s) 446, 487
Bsu15I ATCGAT 1 cut(s) 517
BsuRI GGCC 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 517
BtsCI GGATG 1 cut(s) 746
BtsIMutI CAGTG 3 cut(s) 9, 151, 480
Cac8I GCNNGC 2 cut(s) 378, 545
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 193
CfoI GCGC 2 cut(s) 641, 693
Cfr13I GGNCC 1 cut(s) 562
ClaI ATCGAT 1 cut(s) 517
Csp6I GTAC 1 cut(s) 466
CviAII CATG 3 cut(s) 194, 694, 730
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 4 cut(s) 51, 73, 601, 803
DinI GGCGCC 1 cut(s) 640
DpnI GATC 2 cut(s) 520, 779
DpnII GATC 2 cut(s) 518, 777
DraI TTTAAA 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 733
DrdI GACNNNNNNGTC 1 cut(s) 556
DriI GACNNNNNGTC 1 cut(s) 96
DseDI GACNNNNNNGTC 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 435
Eam1105I GACNNNNNGTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 435
Eco32I GATATC 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 562
EcoRI GAATTC 1 cut(s) 68
EcoRV GATATC 1 cut(s) 721
EgeI GGCGCC 1 cut(s) 640
EheI GGCGCC 1 cut(s) 640
FaeI CATG 3 cut(s) 197, 697, 733
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FatI CATG 3 cut(s) 193, 693, 729
FauI CCCGC 2 cut(s) 455, 530
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 4 cut(s) 112, 115, 460, 501
FokI GGATG 1 cut(s) 753
Fsp4HI GCNGC 4 cut(s) 112, 115, 460, 501
FspI TGCGCA 1 cut(s) 692
GlaI GCGC 2 cut(s) 640, 692
GluI GCNGC 4 cut(s) 112, 115, 460, 501
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 1 cut(s) 117
HapII CCGG 2 cut(s) 405, 642
HhaI GCGC 2 cut(s) 641, 693
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 3 cut(s) 197, 697, 733
Hin6I GCGC 2 cut(s) 639, 691
HinP1I GCGC 2 cut(s) 639, 691
HinfI GANTC 3 cut(s) 49, 401, 607
HpaII CCGG 2 cut(s) 405, 642
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 7 cut(s) 48, 67, 90, 123, 316, 562, 718
Hpy188III TCNNGA 4 cut(s) 194, 611, 683, 794
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 4 cut(s) 22, 128, 147, 339
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 7 cut(s) 228, 273, 421, 430, 503, 653, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 427, 733
HpyF3I CTNAG 4 cut(s) 51, 73, 601, 803
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 3 cut(s) 197, 697, 733
HspAI GCGC 2 cut(s) 639, 691
KasI GGCGCC 1 cut(s) 638
KpnI GGTACC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 2 cut(s) 518, 777
LguI GCTCTTC 1 cut(s) 435
Lsp1109I GCAGC 2 cut(s) 446, 487
LweI GCATC 2 cut(s) 235, 731
MaeIII GTNAC 5 cut(s) 31, 478, 631, 662, 747
MalI GATC 2 cut(s) 520, 779
MboI GATC 2 cut(s) 518, 777
MboII GAAGA 1 cut(s) 452
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 353, 729
MluCI AATT 8 cut(s) 68, 125, 258, 292, 424, 589, 704, 810
Mly113I GGCGCC 1 cut(s) 639
MlyI GAGTC 2 cut(s) 43, 395
MmeI TCCRAC 3 cut(s) 71, 113, 540
MnlI CCTC 3 cut(s) 8, 127, 165
MroXI GAANNNNTTC 2 cut(s) 128, 789
MseI TTAA 3 cut(s) 296, 363, 617
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 2 cut(s) 405, 642
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 254, 427, 733
NarI GGCGCC 1 cut(s) 639
NciI CCSGG 1 cut(s) 406
NdeII GATC 2 cut(s) 518, 777
NlaIII CATG 3 cut(s) 197, 697, 733
NlaIV GGNNCC 3 cut(s) 467, 625, 640
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 4 cut(s) 31, 478, 662, 747
NsbI TGCGCA 1 cut(s) 692
NspI RCATGY 1 cut(s) 697
OliI CACNNNNGTG 1 cut(s) 371
PagI TCATGA 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 435
PdmI GAANNNNTTC 2 cut(s) 128, 789
PfeI GAWTC 1 cut(s) 607
PkrI GCNGC 4 cut(s) 113, 116, 461, 502
PleI GAGTC 2 cut(s) 43, 395
PluTI GGCGCC 1 cut(s) 642
PpsI GAGTC 2 cut(s) 43, 395
PspFI CCCAGC 1 cut(s) 584
PspN4I GGNNCC 3 cut(s) 467, 625, 640
PspPI GGNCC 1 cut(s) 562
PstI CTGCAG 2 cut(s) 505, 678
PstNI CAGNNNCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 3 cut(s) 296, 363, 617
SatI GCNGC 4 cut(s) 112, 115, 460, 501
Sau3AI GATC 2 cut(s) 518, 777
Sau96I GGNCC 1 cut(s) 562
SchI GAGTC 2 cut(s) 43, 395
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 2 cut(s) 353, 729
SfaNI GCATC 2 cut(s) 235, 731
SfcI CTRYAG 2 cut(s) 501, 674
SfoI GGCGCC 1 cut(s) 640
SinI GGWCC 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 8 cut(s) 68, 125, 258, 292, 424, 589, 704, 810
SsiI CCGC 5 cut(s) 111, 114, 248, 462, 523
SspDI GGCGCC 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 4 cut(s) 132, 237, 517, 723
TasI AATT 8 cut(s) 68, 125, 258, 292, 424, 589, 704, 810
TauI GCSGC 2 cut(s) 114, 117
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 3 cut(s) 296, 363, 617
Tru9I TTAA 3 cut(s) 296, 363, 617
TscAI CASTG 3 cut(s) 16, 151, 487
TseFI GTSAC 4 cut(s) 31, 478, 662, 747
TseI GCWGC 2 cut(s) 459, 500
Tsp45I GTSAC 4 cut(s) 31, 478, 662, 747
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 3 cut(s) 16, 151, 487
VpaK11BI GGWCC 1 cut(s) 562
XapI RAATTY 4 cut(s) 68, 292, 424, 704
XceI RCATGY 1 cut(s) 697
XmnI GAANNNNTTC 2 cut(s) 128, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.