FvH4_1g05120

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000358
Physical Location & Seq
Reverse (-)
2718286 .. 2720924
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05120.t1

Sequence Viewer

Length: 1065 bp
ATGGTGGAGATTTCTCAACTGAATGAAGATCTATTGGGTCAGATCCTGAAACGGGTCAGCGACCCGGATGAAAGGAAACGGGTTTCCCAAGTCTGCAAACAATGGTTCATACTCGAGCGTCTAACCAGAACGTCACTCACTTTTCTCGAACTCCGTTTTCTCCTTCAGGTACTTCCTCGATTCCCGAATCTAGTTACATTTCAGACATCCGAGCCTATCTTCATGGACGCAGACCTTAAATTCTTAGCCCAAACATGTCCCAAGCTGGAGACCCTCAATCTCGACACCACAAAACGCAAATCAGGGTTTTTACCGATGAACGGTCTTCACGCTCTGTCACTTGGCGGCGGCCTTCCGAAATTGTCCGAGCTTTTTCTCTTTGGGAGAGATAATGTAGTCGTTGATAAATGGTTACATGAGTTGCCACATGATAAGTTGACTTGTTTGGATTTGGGACACTGCAGGTTTGTCGATGACAAAGGGTTGGTAGTAATTGGGGATATGTGTACTAGTTTGCGTTACTTGAATTTGGCAAAGTCCAAGATTTCGGACTTTGGTTTGAGATTGTTGGCAAATGGAAGGTGCTCGAAAACCCTCAGGACATTGGTGCTTTCTCAATGCTGTTATATAACTGATTTGGGGTTGGCGCATTTGCGGAATATGCAATTCTTGGAAGTGCTGGATTTGGACTACTGCGGGGAGGAAGTCACCGATATTGGAGTTATAGCTGCAGTCTCTTCAAATCGATCCCTCAAGAAGTTGAACTTGAGTTTGTTGAGGAATGTGTCGGACCAAAGCATGGTGTTTCTTGCTGAGAATTGCCCCAACTTACAGTTTCTTGATTTAAGTGGTACTAATGTTACTGGTGCCGGAGTTCGTGCATTTTCTGGTCACAGGTGCCTAGAGTCTCTTGATTTGCACGGGAGTGGTGAATTTTGTTGGTGCGATATCGAGTACTTGGTGCTTGGATGCCAGTCACTCAAGTCTGTCCACCTGTCTAGGCCGCCTATGGACTCAGTTCCAGAAAGCGTTAGCAGAATTGTGACATTGACTGATTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

355

Amino Acids

39.75

Weight (kDa)

6.26

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 6 - 44 2.7e-09 F-box
DUF7885 PF25372 143 - 219 1.6e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 453
AccB1I GGYRCC 2 cut(s) 866, 897
AccB7I CCANNNNNTGG 1 cut(s) 799
AciI CCGC 5 cut(s) 345, 348, 655, 696, 1004
AclWI GGATC 2 cut(s) 37, 741
AcsI RAATTY 3 cut(s) 239, 526, 932
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 4 cut(s) 171, 508, 853, 956
AfiI CCNNNNNNNGG 3 cut(s) 52, 320, 799
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 526, 741, 763
AhlI ACTAGT 1 cut(s) 509
AleI CACNNNNGTG 1 cut(s) 924
AluBI AGCT 3 cut(s) 265, 370, 728
AluI AGCT 3 cut(s) 265, 370, 728
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 3 cut(s) 263, 739, 912
AlwI GGATC 2 cut(s) 37, 741
AlwNI CAGNNNCTG 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 2 cut(s) 349, 1001
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 3 cut(s) 239, 526, 932
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 1 cut(s) 790
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 700, 941
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 790
AxyI CCTNAGG 1 cut(s) 596
BaeI ACNNNNGTAYC 2 cut(s) 843, 876
BanI GGYRCC 2 cut(s) 866, 897
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 1 cut(s) 715
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 263, 739, 912
BcuI ACTAGT 1 cut(s) 509
BfaI CTAG 4 cut(s) 191, 510, 902, 999
BfmI CTRYAG 2 cut(s) 460, 729
BfuAI ACCTGC 1 cut(s) 453
BglII AGATCT 1 cut(s) 28
BisI GCNGC 4 cut(s) 346, 349, 729, 1004
BlsI GCNGC 4 cut(s) 347, 350, 730, 1005
BmcAI AGTACT 1 cut(s) 956
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 790
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 790
BmiI GGNNCC 2 cut(s) 868, 899
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 959
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 3 cut(s) 737, 787, 965
BpuMI CCSGG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 745
BsaI GGTCTC 1 cut(s) 263
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 320, 799
Bse1I ACTGG 2 cut(s) 868, 973
Bse21I CCTNAGG 1 cut(s) 596
BseCI ATCGAT 1 cut(s) 745
BseGI GGATG 3 cut(s) 73, 206, 974
BseLI CCNNNNNNNGG 3 cut(s) 52, 320, 799
BseMII CTCAG 3 cut(s) 610, 804, 1029
BseNI ACTGG 2 cut(s) 868, 973
BseXI GCAGC 1 cut(s) 715
BshFI GGCC 2 cut(s) 351, 1003
BshNI GGYRCC 2 cut(s) 866, 897
BshVI ATCGAT 1 cut(s) 745
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 2 cut(s) 65, 870
BslFI GGGAC 2 cut(s) 243, 468
BslI CCNNNNNNNGG 3 cut(s) 52, 320, 799
BsmAI GTCTC 3 cut(s) 263, 739, 912
BsmFI GGGAC 2 cut(s) 243, 468
BsnI GGCC 2 cut(s) 351, 1003
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 3 cut(s) 28, 42, 746
BspACI CCGC 5 cut(s) 345, 348, 655, 696, 1004
BspANI GGCC 2 cut(s) 351, 1003
BspCNI CTCAG 3 cut(s) 609, 805, 1028
BspDI ATCGAT 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 868, 899
BspMAI CTGCAG 2 cut(s) 464, 733
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 2 cut(s) 37, 741
BspT107I GGYRCC 2 cut(s) 866, 897
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 2 cut(s) 868, 973
BssMI GATC 3 cut(s) 28, 42, 746
Bst4CI ACNGT 2 cut(s) 323, 834
Bst6I CTCTTC 1 cut(s) 742
BstDEI CTNAG 4 cut(s) 244, 596, 813, 1015
BstF5I GGATG 3 cut(s) 73, 206, 974
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 3 cut(s) 31, 45, 749
BstMAI GTCTC 3 cut(s) 263, 739, 912
BstMBI GATC 3 cut(s) 28, 42, 746
BstMWI GCNNNNNNNGC 1 cut(s) 661
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 63
BstSFI CTRYAG 2 cut(s) 460, 729
BstV1I GCAGC 1 cut(s) 715
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 2 cut(s) 28, 42
BstYI RGATCY 2 cut(s) 28, 42
Bsu15I ATCGAT 1 cut(s) 745
Bsu36I CCTNAGG 1 cut(s) 596
BsuRI GGCC 2 cut(s) 351, 1003
BsuTUI ATCGAT 1 cut(s) 745
BtsCI GGATG 3 cut(s) 73, 206, 974
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 457
BveI ACCTGC 1 cut(s) 453
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 649
Cfr13I GGNCC 1 cut(s) 790
ClaI ATCGAT 1 cut(s) 745
CseI GACGC 2 cut(s) 107, 236
Csp6I GTAC 4 cut(s) 170, 507, 852, 955
CviAII CATG 5 cut(s) 223, 255, 416, 428, 799
CviJI RGCY 7 cut(s) 214, 248, 265, 351, 370, 728, 1003
CviKI_1 RGCY 7 cut(s) 214, 248, 265, 351, 370, 728, 1003
CviQI GTAC 4 cut(s) 170, 507, 852, 955
DdeI CTNAG 4 cut(s) 244, 596, 813, 1015
DpnI GATC 3 cut(s) 30, 44, 748
DpnII GATC 3 cut(s) 28, 42, 746
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Eco31I GGTCTC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 949
Eco47I GGWCC 1 cut(s) 790
Eco57I CTGAAG 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 113
EcoRV GATATC 1 cut(s) 949
FaeI CATG 5 cut(s) 226, 258, 419, 431, 802
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 2 cut(s) 243, 468
FatI CATG 5 cut(s) 222, 254, 415, 427, 798
FauI CCCGC 1 cut(s) 689
Fnu4HI GCNGC 4 cut(s) 346, 349, 729, 1004
FokI GGATG 3 cut(s) 80, 193, 981
Fsp4HI GCNGC 4 cut(s) 346, 349, 729, 1004
FspBI CTAG 4 cut(s) 191, 510, 902, 999
GlaI GCGC 1 cut(s) 648
GluI GCNGC 4 cut(s) 346, 349, 729, 1004
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 351, 1003
HapII CCGG 2 cut(s) 65, 870
HgaI GACGC 2 cut(s) 107, 236
HhaI GCGC 1 cut(s) 649
Hin1II CATG 5 cut(s) 226, 258, 419, 431, 802
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 4 cut(s) 180, 187, 905, 1013
HpaII CCGG 2 cut(s) 65, 870
HphI GGTGA 2 cut(s) 700, 941
Hpy166II GTNNAC 3 cut(s) 438, 507, 991
Hpy188I TCNGA 7 cut(s) 42, 204, 211, 357, 367, 550, 790
Hpy188III TCNNGA 9 cut(s) 46, 146, 184, 281, 598, 754, 839, 911, 1022
Hpy8I GTNNAC 3 cut(s) 438, 507, 991
HpyAV CCTTC 3 cut(s) 173, 362, 573
HpyCH4III ACNGT 2 cut(s) 323, 834
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 6 cut(s) 96, 462, 664, 731, 881, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 661
HpyF3I CTNAG 4 cut(s) 244, 596, 813, 1015
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 5 cut(s) 226, 258, 419, 431, 802
HspAI GCGC 1 cut(s) 647
Kzo9I GATC 3 cut(s) 28, 42, 746
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 1 cut(s) 959
MaeI CTAG 4 cut(s) 191, 510, 902, 999
MaeII ACGT 1 cut(s) 131
MalI GATC 3 cut(s) 30, 44, 748
MboI GATC 3 cut(s) 28, 42, 746
MboII GAAGA 4 cut(s) 38, 211, 317, 729
MflI RGATCY 2 cut(s) 28, 42
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 8 cut(s) 239, 359, 492, 526, 665, 817, 932, 1038
MlyI GAGTC 2 cut(s) 914, 1007
MmeI TCCRAC 1 cut(s) 768
MnlI CCTC 6 cut(s) 186, 284, 605, 694, 761, 771
MseI TTAA 2 cut(s) 237, 845
MslI CAYNNNNRTG 1 cut(s) 924
MspI CCGG 2 cut(s) 65, 870
MspR9I CCNGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 661
NciI CCSGG 1 cut(s) 65
NdeII GATC 3 cut(s) 28, 42, 746
NlaIII CATG 5 cut(s) 226, 258, 419, 431, 802
NlaIV GGNNCC 2 cut(s) 868, 899
NmuCI GTSAC 6 cut(s) 132, 336, 706, 890, 975, 1042
NspI RCATGY 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 924
PaeR7I CTCGAG 1 cut(s) 113
PciI ACATGT 1 cut(s) 254
PfeI GAWTC 2 cut(s) 180, 187
PflMI CCANNNNNTGG 1 cut(s) 799
PkrI GCNGC 4 cut(s) 347, 350, 730, 1005
PleI GAGTC 2 cut(s) 913, 1007
PpsI GAGTC 2 cut(s) 913, 1007
PscI ACATGT 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 868, 899
PspPI GGNCC 1 cut(s) 790
PspXI VCTCGAGB 1 cut(s) 113
PstI CTGCAG 2 cut(s) 464, 733
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 28, 42
RsaI GTAC 4 cut(s) 171, 508, 853, 956
RsaNI GTAC 4 cut(s) 170, 507, 852, 955
RseI CAYNNNNRTG 1 cut(s) 924
SaqAI TTAA 2 cut(s) 237, 845
SatI GCNGC 4 cut(s) 346, 349, 729, 1004
Sau3AI GATC 3 cut(s) 28, 42, 746
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 1 cut(s) 956
SchI GAGTC 2 cut(s) 914, 1007
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 1 cut(s) 959
SfcI CTRYAG 2 cut(s) 460, 729
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 790
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 4 cut(s) 113, 752, 766, 980
SmoI CTYRAG 4 cut(s) 113, 752, 766, 980
SpeI ACTAGT 1 cut(s) 509
Sse9I AATT 8 cut(s) 239, 359, 492, 526, 665, 817, 932, 1038
SsiI CCGC 5 cut(s) 345, 348, 655, 696, 1004
SspMI CTAG 4 cut(s) 191, 510, 902, 999
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 323, 834
TaiI ACGT 1 cut(s) 134
TaqI TCGA 8 cut(s) 114, 147, 178, 282, 471, 587, 745, 951
TasI AATT 8 cut(s) 239, 359, 492, 526, 665, 817, 932, 1038
TatI WGTACW 2 cut(s) 506, 954
TauI GCSGC 3 cut(s) 348, 351, 1006
TfiI GAWTC 2 cut(s) 180, 187
Tru1I TTAA 2 cut(s) 237, 845
Tru9I TTAA 2 cut(s) 237, 845
TscAI CASTG 1 cut(s) 464
TseFI GTSAC 6 cut(s) 132, 336, 706, 890, 975, 1042
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 6 cut(s) 132, 336, 706, 890, 975, 1042
TspDTI ATGAA 5 cut(s) 39, 84, 97, 211, 332
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 464
Van91I CCANNNNNTGG 1 cut(s) 799
VpaK11BI GGWCC 1 cut(s) 790
XapI RAATTY 3 cut(s) 239, 526, 932
XceI RCATGY 1 cut(s) 258
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 4 cut(s) 191, 510, 902, 999
ZrmI AGTACT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.