FvH4_2g32630

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Forward (+)
24678493 .. 24679713
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32630.t1

Sequence Viewer

Length: 1056 bp
ATGGTGGAGATTTCTGATCTGAATGACGATCTATTAGGTCACATCCTCAAACGGGTCAGCCAGCCGGATGATCGGAAGCGGGTCTCCGAAGTCTGCAAACTATGGTTCACACTGGAGGGTCTAACCACAAGATCACTCCGTCTTTTCAAACTCAGTCTTCTCCGACAGATGCTACCCCGATTCCCGAATCTAGTTACATTCCGCACATCCGAGTCTATCTCTGAGGAAGCCGACCTCGAATTCATAGCCCAAACATGTCCCAAAATGGAGGCCATCGTTCTCAACGCCGTAAAATTATTATCAAGGTTTTTACCGGAGAACGGTCTTTACGGTCTGTCAAGTGGCGGCGGCCTTCCGAAACTGTCCAAGGTTTCGGTCAGAGGGAGATGGCGTGCATCCATTGACAGATGGATACATAGGTTTCCTAATTTGACTGATTTAGATTTGGGAAGGTGCAGTGATGTCGATGACAATGCGTTAGAAGCAATTGGGCTACATTGCACTTGTTTAAGATATTTGAATCTAGAAGATTCCAAGGTTACCGACTATGGTTTGAGATTTTTAGCACATGGAAGGTGCTCAAAGACCCTCAACACATTGGTGCTGGCTGCCTGCTATGGTATAACTGACTTGGGGCTCTCGCATTTGCAAAATTTCCAATTCCTGTTAGAGCGGGATTTGGATAGGTGCGATGTCACTGATACTGGAGTTATTGCTGCAACCTCTTCAAATCGATCCCTCAAGAAATTGAACTTGGGCAGGTTGACGAATGTGTCGGACCAAAGCATGGTGTATGTTGCTGGGAATTGCCCCAACTTAGAGATTCTTGATTTAACTGGTTGCTCTAATGTAACTGGCGCCGGAGTACGTGCATTTTCTGGTCACAGGTGTCTAGAGTCTCTTGTAATTCGACGGTGTGAATTTTGTTGGTCTGATATCGAGCACATGGTGCTTGGATGCCAGTCACTCAAGTCTATCCTCCTGAGTAGGCCGCATATGCACTCAGTTCAGGAAAGCGTTGGCAGAATTGTGACGTTGGTTGATGACTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

352

Amino Acids

39.39

Weight (kDa)

7.08

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 7 - 42 2.4e-07 F-box
DUF7885 PF25372 143 - 297 3.1e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 772
Acc36I ACCTGC 1 cut(s) 750
AccB1I GGYRCC 1 cut(s) 857
AccB7I CCANNNNNTGG 1 cut(s) 787
AccBSI CCGCTC 1 cut(s) 673
AciI CCGC 6 cut(s) 79, 202, 345, 348, 673, 992
AclWI GGATC 1 cut(s) 729
AcsI RAATTY 3 cut(s) 239, 652, 920
AcyI GRCGYC 1 cut(s) 858
AdeI CACNNNGTG 1 cut(s) 949
AfaI GTAC 1 cut(s) 867
AfiI CCNNNNNNNGG 3 cut(s) 52, 320, 787
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 4 cut(s) 148, 520, 729, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AleI CACNNNNGTG 1 cut(s) 599
Alw21I GWGCWC 2 cut(s) 581, 945
Alw26I GTCTC 2 cut(s) 88, 903
AlwI GGATC 1 cut(s) 729
AoxI GGCC 3 cut(s) 270, 349, 989
ApeKI GCWGC 2 cut(s) 608, 716
ApoI RAATTY 3 cut(s) 239, 652, 920
AspLEI GCGC 1 cut(s) 860
AspS9I GGNCC 1 cut(s) 778
AvaII GGWCC 1 cut(s) 778
BaeI ACNNNNGTAYC 4 cut(s) 404, 437, 693, 726
BanI GGYRCC 1 cut(s) 857
BanII GRGCYC 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 581, 945
BbvI GCAGC 2 cut(s) 595, 703
BccI CCATC 3 cut(s) 281, 381, 402
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 4 cut(s) 445, 455, 479, 489
BciVI GTATCC 1 cut(s) 405
BcoDI GTCTC 2 cut(s) 88, 903
BfaI CTAG 3 cut(s) 191, 524, 893
BfoI RGCGCY 1 cut(s) 861
BfuAI ACCTGC 1 cut(s) 750
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 5 cut(s) 346, 349, 609, 717, 992
BlsI GCNGC 5 cut(s) 347, 350, 610, 718, 993
Bme18I GGWCC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 778
BmiI GGNNCC 1 cut(s) 859
BmsI GCATC 3 cut(s) 159, 404, 947
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 2 cut(s) 134, 726
BpuEI CTTGAG 2 cut(s) 725, 953
Bsa29I ATCGAT 1 cut(s) 733
BsaAI YACGTR 1 cut(s) 869
BsaHI GRCGYC 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 366, 534
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 320, 787
Bse1I ACTGG 6 cut(s) 117, 709, 841, 859, 961, 1052
Bse3DI GCAATG 1 cut(s) 496
BseCI ATCGAT 1 cut(s) 733
BseDI CCNNGG 2 cut(s) 366, 534
BseGI GGATG 5 cut(s) 42, 73, 206, 395, 962
BseLI CCNNNNNNNGG 3 cut(s) 52, 320, 787
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 4 cut(s) 166, 213, 974, 1017
BseNI ACTGG 6 cut(s) 117, 709, 841, 859, 961, 1052
BseXI GCAGC 2 cut(s) 595, 703
BseYI CCCAGC 1 cut(s) 800
BsgI GTGCAG 1 cut(s) 475
BshFI GGCC 3 cut(s) 272, 351, 991
BshNI GGYRCC 1 cut(s) 857
BshVI ATCGAT 1 cut(s) 733
BsiHKAI GWGCWC 2 cut(s) 581, 945
BsiSI CCGG 3 cut(s) 65, 314, 861
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 52, 320, 787
BsmAI GTCTC 2 cut(s) 88, 903
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 3 cut(s) 272, 351, 991
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 3 cut(s) 581, 639, 945
Bsp143I GATC 5 cut(s) 16, 28, 70, 131, 734
BspACI CCGC 6 cut(s) 79, 202, 345, 348, 673, 992
BspANI GGCC 3 cut(s) 272, 351, 991
BspCNI CTCAG 4 cut(s) 165, 214, 975, 1016
BspDI ATCGAT 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 750
BspPI GGATC 1 cut(s) 729
BspT107I GGYRCC 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 673
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 6 cut(s) 117, 709, 841, 859, 961, 1052
BssECI CCNNGG 2 cut(s) 366, 534
BssMI GATC 5 cut(s) 16, 28, 70, 131, 734
BssNI GRCGYC 1 cut(s) 858
BssT1I CCWWGG 2 cut(s) 366, 534
Bst4CI ACNGT 4 cut(s) 323, 332, 363, 915
Bst6I CTCTTC 1 cut(s) 730
BstACI GRCGYC 1 cut(s) 858
BstAPI GCANNNNNTGC 1 cut(s) 949
BstBAI YACGTR 1 cut(s) 869
BstC8I GCNNGC 4 cut(s) 62, 393, 606, 613
BstDEI CTNAG 5 cut(s) 152, 222, 817, 983, 1003
BstEII GGTNACC 1 cut(s) 538
BstF5I GGATG 5 cut(s) 42, 73, 206, 395, 962
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 1 cut(s) 860
BstKTI GATC 5 cut(s) 19, 31, 73, 134, 737
BstMAI GTCTC 2 cut(s) 88, 903
BstMBI GATC 5 cut(s) 16, 28, 70, 131, 734
BstMWI GCNNNNNNNGC 3 cut(s) 482, 949, 997
BstNSI RCATGY 1 cut(s) 258
BstPI GGTNACC 1 cut(s) 538
BstV1I GCAGC 2 cut(s) 595, 703
BstV2I GAAGAC 1 cut(s) 149
Bsu15I ATCGAT 1 cut(s) 733
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 3 cut(s) 272, 351, 991
BsuTUI ATCGAT 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 705
BtsCI GGATG 5 cut(s) 42, 73, 206, 395, 962
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 3 cut(s) 110, 463, 696
BveI ACCTGC 1 cut(s) 750
Cac8I GCNNGC 4 cut(s) 62, 393, 606, 613
CfoI GCGC 1 cut(s) 860
Cfr13I GGNCC 1 cut(s) 778
ClaI ATCGAT 1 cut(s) 733
Csp6I GTAC 1 cut(s) 866
CviAII CATG 4 cut(s) 255, 569, 787, 946
CviQI GTAC 1 cut(s) 866
DdeI CTNAG 5 cut(s) 152, 222, 817, 983, 1003
DinI GGCGCC 1 cut(s) 859
DpnI GATC 5 cut(s) 18, 30, 72, 133, 736
DpnII GATC 5 cut(s) 16, 28, 70, 131, 734
DraIII CACNNNGTG 1 cut(s) 949
DrdI GACNNNNNNGTC 1 cut(s) 772
DseDI GACNNNNNNGTC 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 730
EarI CTCTTC 1 cut(s) 730
Eco130I CCWWGG 2 cut(s) 366, 534
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 778
Eco91I GGTNACC 1 cut(s) 538
EcoO65I GGTNACC 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 239
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 366, 534
EcoT38I GRGCYC 1 cut(s) 639
EgeI GGCGCC 1 cut(s) 859
EheI GGCGCC 1 cut(s) 859
ErhI CCWWGG 2 cut(s) 366, 534
FaeI CATG 4 cut(s) 258, 572, 790, 949
FaqI GGGAC 1 cut(s) 243
FatI CATG 4 cut(s) 254, 568, 786, 945
FauI CCCGC 2 cut(s) 72, 666
FauNDI CATATG 1 cut(s) 996
Fnu4HI GCNGC 5 cut(s) 346, 349, 609, 717, 992
FokI GGATG 5 cut(s) 29, 80, 193, 382, 969
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 5 cut(s) 346, 349, 609, 717, 992
FspBI CTAG 3 cut(s) 191, 524, 893
GlaI GCGC 1 cut(s) 859
GluI GCNGC 5 cut(s) 346, 349, 609, 717, 992
GsaI CCCAGC 1 cut(s) 804
GsuI CTGGAG 2 cut(s) 134, 726
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 3 cut(s) 272, 351, 991
HapII CCGG 3 cut(s) 65, 314, 861
HhaI GCGC 1 cut(s) 860
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 4 cut(s) 258, 572, 790, 949
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HincII GTYRAC 1 cut(s) 765
HindII GTYRAC 1 cut(s) 765
HinfI GANTC 7 cut(s) 180, 187, 212, 520, 530, 823, 896
HpaII CCGG 3 cut(s) 65, 314, 861
Hpy166II GTNNAC 2 cut(s) 108, 765
Hpy188III TCNNGA 7 cut(s) 184, 524, 742, 827, 893, 982, 1010
Hpy8I GTNNAC 2 cut(s) 108, 765
Hpy99I CGWCG 1 cut(s) 915
HpyAV CCTTC 3 cut(s) 362, 444, 567
HpyCH4III ACNGT 4 cut(s) 323, 332, 363, 915
HpyCH4IV ACGT 2 cut(s) 868, 1034
HpyCH4V TGCA 8 cut(s) 96, 395, 456, 501, 649, 719, 872, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 949, 997
HpyF3I CTNAG 5 cut(s) 152, 222, 817, 983, 1003
HpySE526I ACGT 2 cut(s) 868, 1034
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 4 cut(s) 258, 572, 790, 949
HspAI GCGC 1 cut(s) 858
KasI GGCGCC 1 cut(s) 857
Kzo9I GATC 5 cut(s) 16, 28, 70, 131, 734
Lsp1109I GCAGC 2 cut(s) 595, 703
LweI GCATC 3 cut(s) 159, 404, 947
MaeI CTAG 3 cut(s) 191, 524, 893
MaeII ACGT 2 cut(s) 868, 1034
MaeIII GTNAC 8 cut(s) 38, 193, 538, 694, 850, 881, 963, 1030
MalI GATC 5 cut(s) 18, 30, 72, 133, 736
MbiI CCGCTC 1 cut(s) 673
MboI GATC 5 cut(s) 16, 28, 70, 131, 734
MboII GAAGA 3 cut(s) 149, 539, 717
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 3 cut(s) 581, 639, 945
Mly113I GGCGCC 1 cut(s) 858
MlyI GAGTC 2 cut(s) 221, 905
MmeI TCCRAC 2 cut(s) 187, 756
MseI TTAA 2 cut(s) 509, 833
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 3 cut(s) 65, 314, 861
MunI CAATTG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 482, 949, 997
NarI GGCGCC 1 cut(s) 858
NdeI CATATG 1 cut(s) 996
NdeII GATC 5 cut(s) 16, 28, 70, 131, 734
NlaIII CATG 4 cut(s) 258, 572, 790, 949
NlaIV GGNNCC 1 cut(s) 859
NmuCI GTSAC 5 cut(s) 38, 694, 881, 963, 1030
NspI RCATGY 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 599
PciI ACATGT 1 cut(s) 254
PfeI GAWTC 5 cut(s) 180, 187, 520, 530, 823
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 5 cut(s) 347, 350, 610, 718, 993
PleI GAGTC 2 cut(s) 220, 904
PluTI GGCGCC 1 cut(s) 861
PpsI GAGTC 2 cut(s) 220, 904
Ppu21I YACGTR 1 cut(s) 869
PscI ACATGT 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 800
PspN4I GGNNCC 1 cut(s) 859
PspPI GGNCC 1 cut(s) 778
PsrI GAACNNNNNNTAC 2 cut(s) 311, 343
RsaI GTAC 1 cut(s) 867
RsaNI GTAC 1 cut(s) 866
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 2 cut(s) 509, 833
SatI GCNGC 5 cut(s) 346, 349, 609, 717, 992
Sau3AI GATC 5 cut(s) 16, 28, 70, 131, 734
Sau96I GGNCC 1 cut(s) 778
SchI GAGTC 2 cut(s) 221, 905
SduI GDGCHC 3 cut(s) 581, 639, 945
SfaNI GCATC 3 cut(s) 159, 404, 947
SfoI GGCGCC 1 cut(s) 859
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 740, 968
SmoI CTYRAG 2 cut(s) 740, 968
SsiI CCGC 6 cut(s) 79, 202, 345, 348, 673, 992
SspDI GGCGCC 1 cut(s) 857
SspMI CTAG 3 cut(s) 191, 524, 893
StyI CCWWGG 2 cut(s) 366, 534
TaaI ACNGT 4 cut(s) 323, 332, 363, 915
TaiI ACGT 2 cut(s) 871, 1037
TaqI TCGA 5 cut(s) 237, 465, 733, 910, 939
TaqII GACCGA 1 cut(s) 364
TauI GCSGC 3 cut(s) 348, 351, 994
TfiI GAWTC 5 cut(s) 180, 187, 520, 530, 823
Tru1I TTAA 2 cut(s) 509, 833
Tru9I TTAA 2 cut(s) 509, 833
TscAI CASTG 3 cut(s) 117, 463, 703
TseFI GTSAC 5 cut(s) 38, 694, 881, 963, 1030
TseI GCWGC 2 cut(s) 608, 716
Tsp45I GTSAC 5 cut(s) 38, 694, 881, 963, 1030
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 3 cut(s) 117, 463, 703
Van91I CCANNNNNTGG 1 cut(s) 787
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 3 cut(s) 239, 652, 920
XbaI TCTAGA 2 cut(s) 523, 892
XceI RCATGY 1 cut(s) 258
XspI CTAG 3 cut(s) 191, 524, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.