FvH4_5g19260

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000358
Physical Location & Seq
Reverse (-)
11110458 .. 11112886
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19260.t1

Sequence Viewer

Length: 1179 bp
ATGGAAATTCTGACTCAAAAAAGAAAGAAGAGAAACAAGGAATTTCTGCTTGGAGATGACGAACTAGGGCTAATCCTGAGCCGGGTGAGCGATCCAGACGACAGAAAATCAGCCTCTCAGGTCTGCAAGGGATGGCGGCTAATGGAGGGTCTGACCCGATCATCACTCCGAGTCCTTAACCTCGATCATCTCCCTCAACTACTTTCTAGGTACCCAAACTTGAACACATTCGAAACACCCAAAGGAATGAGCAACGCCGACCTCGCTTTGCTGGCCCAATCATGCCCCAAACTGGAGGCCATCAAACTTGTGGCCATAAATATTGATGAGGAAATTGGGACACAAGGCGGTCGCGCACTGCAAGGCCTTGAATCAGGGATCTCTGCTGATCAAGTAATTGAGCAAATGCGGGTGCTTGTGCAAGTTGGGGACGAAGGTTTGTGCGCTTTGGCAAATGGGTGTCCCAAATTGTCCAAGATTGTGGTTATAGAGAGAAAGGTTGGGATGGTTGGATTTATGGCCATCACTTCAGCAGCACATAACTTGACTTATTTGGATTTGGAAGAGTCTTTTGTTTCGGACCAAGCCCTTGAAGCAATTGGGTCCTCTAGTTGTCCCGTTCGCGTTTTGAGGTTGAAACTATGCGCCGTGTCTGATGCCGGGTTGGGATTTTTGGCAAATGGGTCTTGCTCAAAAACCATCAAGGAATTGAACCTTAATGCCAACATGGAGATCACTGATGTCGGGGTCTCGCTTTTGTGCAAGATGTGTGTCTTGGAGGAGCTGGATTTGGGTGTCTGTATGAAGATAACTGATGTTGGAGGACAGGCAATCTCCGCAATTCGGACCCTCAAGAAGTTGAACTTGGAATGTGTGTTCTTACTGACAGAAAAAACCTTTGTAGCTCTTGCTGAGAATTGCCTTTACTTGGAGGTGCTTCGTCTAGATGGTGGTACAGAGATGGCTGCTTTTGATGCGTTTTTAGGTCACAAATGCTTGCGATCCCTTAGACTAATTGGTTATATGCCTAATGATTTTAGAGGATCTACTTTAGAAAGGCTAGCGCTTCGATGTCCTTCATTGGAGTCGATTGTGGTGCCAGAAGATTGGAGAGAGAGGCTGTTGCATTTAATGCAAGAGAGTACTGCTAGCAGATTCCTGCAATTCATTGACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

393

Amino Acids

43.09

Weight (kDa)

5.51

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 19 - 54 3.7e-07 F-box
DUF7885 PF25372 171 - 283 2e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 2 cut(s) 210, 1096
AccII CGCG 2 cut(s) 354, 624
AciI CCGC 4 cut(s) 136, 348, 409, 837
AclWI GGATC 4 cut(s) 86, 386, 996, 1051
AcoI YGGCCR 2 cut(s) 312, 519
AcsI RAATTY 2 cut(s) 6, 41
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 3 cut(s) 212, 955, 1144
AfeI AGCGCT 1 cut(s) 1065
AfiI CCNNNNNNNGG 4 cut(s) 82, 292, 843, 928
AgsI TTSAA 6 cut(s) 223, 371, 593, 637, 712, 862
AjuI GAANNNNNNNTTGG 4 cut(s) 33, 65, 848, 880
AloI GAACNNNNNNTCC 2 cut(s) 860, 892
AluBI AGCT 2 cut(s) 784, 905
AluI AGCT 2 cut(s) 784, 905
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 4 cut(s) 86, 386, 996, 1051
Aor51HI AGCGCT 1 cut(s) 1065
AoxI GGCC 5 cut(s) 273, 297, 312, 364, 519
ApeKI GCWGC 2 cut(s) 533, 965
ApoI RAATTY 2 cut(s) 6, 41
Asp700I GAANNNNTTC 1 cut(s) 227
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 4 cut(s) 356, 446, 647, 1066
AspS9I GGNCC 4 cut(s) 274, 580, 603, 846
AsuC2I CCSGG 2 cut(s) 83, 661
AsuHPI GGTGA 1 cut(s) 97
AsuII TTCGAA 1 cut(s) 231
AsuNHI GCTAGC 2 cut(s) 1060, 1148
AvaII GGWCC 3 cut(s) 580, 603, 846
BalI TGGCCA 2 cut(s) 314, 521
BanI GGYRCC 2 cut(s) 210, 1096
BbvI GCAGC 2 cut(s) 545, 952
BccI CCATC 7 cut(s) 126, 308, 499, 530, 707, 941, 955
BceAI ACGGC 1 cut(s) 632
BcgI CGANNNNNNTGC 2 cut(s) 1078, 1112
BclI TGATCA 1 cut(s) 388
BcnI CCSGG 2 cut(s) 83, 661
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 6 cut(s) 65, 207, 609, 944, 1061, 1149
BfoI RGCGCY 1 cut(s) 1067
BisI GCNGC 3 cut(s) 137, 534, 966
BlsI GCNGC 3 cut(s) 138, 535, 967
BmcAI AGTACT 1 cut(s) 1144
Bme1390I CCNGG 2 cut(s) 83, 661
Bme18I GGWCC 3 cut(s) 580, 603, 846
BmgT120I GGNCC 4 cut(s) 274, 580, 603, 846
BmiI GGNNCC 4 cut(s) 212, 604, 848, 1098
BmrFI CCNGG 2 cut(s) 83, 661
BmsI GCATC 2 cut(s) 646, 964
BmtI GCTAGC 2 cut(s) 1064, 1152
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 2 cut(s) 83, 661
BsaI GGTCTC 1 cut(s) 754
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 292, 843, 928
Bse1I ACTGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 137, 510
BseLI CCNNNNNNNGG 4 cut(s) 82, 292, 843, 928
BseMII CTCAG 3 cut(s) 68, 131, 903
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 794
BseXI GCAGC 2 cut(s) 545, 952
Bsh1236I CGCG 2 cut(s) 354, 624
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 5 cut(s) 275, 299, 314, 366, 521
BshNI GGYRCC 2 cut(s) 210, 1096
BsiEI CGRYCG 1 cut(s) 352
BsiSI CCGG 2 cut(s) 82, 660
BslFI GGGAC 4 cut(s) 352, 443, 447, 600
BslI CCNNNNNNNGG 4 cut(s) 82, 292, 843, 928
BsmAI GTCTC 1 cut(s) 754
BsmFI GGGAC 4 cut(s) 352, 443, 447, 600
BsnI GGCC 5 cut(s) 275, 299, 314, 366, 521
Bso31I GGTCTC 1 cut(s) 754
Bsp119I TTCGAA 1 cut(s) 231
Bsp143I GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
BspACI CCGC 4 cut(s) 136, 348, 409, 837
BspANI GGCC 5 cut(s) 275, 299, 314, 366, 521
BspCNI CTCAG 3 cut(s) 69, 130, 904
BspFNI CGCG 2 cut(s) 354, 624
BspLI GGNNCC 4 cut(s) 212, 604, 848, 1098
BspOI GCTAGC 2 cut(s) 1064, 1152
BspPI GGATC 4 cut(s) 86, 386, 996, 1051
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 210, 1096
BspTNI GGTCTC 1 cut(s) 754
BsrI ACTGG 1 cut(s) 297
BssMI GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
Bst6I CTCTTC 2 cut(s) 23, 558
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 273, 998, 1062, 1150
BstDEI CTNAG 4 cut(s) 77, 117, 912, 1007
BstF5I GGATG 2 cut(s) 137, 510
BstFNI CGCG 2 cut(s) 354, 624
BstH2I RGCGCY 1 cut(s) 1067
BstHHI GCGC 4 cut(s) 356, 446, 647, 1066
BstKTI GATC 8 cut(s) 94, 161, 187, 381, 391, 735, 1004, 1046
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 7 cut(s) 87, 263, 272, 593, 836, 974, 1132
BstSCI CCNGG 2 cut(s) 81, 659
BstUI CGCG 2 cut(s) 354, 624
BstV1I GCAGC 2 cut(s) 545, 952
BstX2I RGATCY 2 cut(s) 378, 1043
BstXI CCANNNNNNTGG 2 cut(s) 481, 1107
BstYI RGATCY 2 cut(s) 378, 1043
BsuRI GGCC 5 cut(s) 275, 299, 314, 366, 521
BtsCI GGATG 2 cut(s) 137, 510
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 2 cut(s) 356, 735
Cac8I GCNNGC 4 cut(s) 273, 998, 1062, 1150
CfoI GCGC 4 cut(s) 356, 446, 647, 1066
Cfr13I GGNCC 4 cut(s) 274, 580, 603, 846
Csp6I GTAC 3 cut(s) 211, 954, 1143
CviAII CATG 2 cut(s) 282, 727
CviQI GTAC 3 cut(s) 211, 954, 1143
DdeI CTNAG 4 cut(s) 77, 117, 912, 1007
DpnI GATC 8 cut(s) 93, 160, 186, 380, 390, 734, 1003, 1045
DpnII GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
EaeI YGGCCR 2 cut(s) 312, 519
Eam1104I CTCTTC 2 cut(s) 23, 558
EarI CTCTTC 2 cut(s) 23, 558
Eco147I AGGCCT 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 754
Eco47I GGWCC 3 cut(s) 580, 603, 846
Eco47III AGCGCT 1 cut(s) 1065
Eco57I CTGAAG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 603
FaeI CATG 2 cut(s) 285, 730
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FaqI GGGAC 4 cut(s) 352, 443, 447, 600
FatI CATG 2 cut(s) 281, 726
FauI CCCGC 1 cut(s) 402
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 3 cut(s) 137, 534, 966
FokI GGATG 2 cut(s) 144, 517
Fsp4HI GCNGC 3 cut(s) 137, 534, 966
FspBI CTAG 6 cut(s) 65, 207, 609, 944, 1061, 1149
GlaI GCGC 4 cut(s) 355, 445, 646, 1065
GluI GCNGC 3 cut(s) 137, 534, 966
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 1067
HaeIII GGCC 5 cut(s) 275, 299, 314, 366, 521
HapII CCGG 2 cut(s) 82, 660
HhaI GCGC 4 cut(s) 356, 446, 647, 1066
Hin1II CATG 2 cut(s) 285, 730
Hin6I GCGC 4 cut(s) 354, 444, 645, 1064
HinP1I GCGC 4 cut(s) 354, 444, 645, 1064
HinfI GANTC 6 cut(s) 13, 171, 371, 566, 1085, 1155
HpaII CCGG 2 cut(s) 82, 660
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 6 cut(s) 12, 153, 170, 580, 655, 846
Hpy188III TCNNGA 4 cut(s) 76, 95, 853, 944
HpyAV CCTTC 2 cut(s) 428, 1086
HpyCH4V TGCA 7 cut(s) 126, 361, 421, 762, 1126, 1135, 1162
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 263, 272, 593, 836, 974, 1132
HpyF3I CTNAG 4 cut(s) 77, 117, 912, 1007
Hsp92II CATG 2 cut(s) 285, 730
HspAI GCGC 4 cut(s) 354, 444, 645, 1064
KpnI GGTACC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 2 cut(s) 545, 952
LweI GCATC 2 cut(s) 646, 964
MaeI CTAG 6 cut(s) 65, 207, 609, 944, 1061, 1149
MaeIII GTNAC 1 cut(s) 986
MalI GATC 8 cut(s) 93, 160, 186, 380, 390, 734, 1003, 1045
MboI GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
MboII GAAGA 4 cut(s) 40, 575, 817, 1115
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 2 cut(s) 378, 1043
MlsI TGGCCA 2 cut(s) 314, 521
MluNI TGGCCA 2 cut(s) 314, 521
MlyI GAGTC 4 cut(s) 7, 180, 575, 1094
MmeI TCCRAC 2 cut(s) 490, 799
Mox20I TGGCCA 2 cut(s) 314, 521
MroXI GAANNNNTTC 1 cut(s) 227
MscI TGGCCA 2 cut(s) 314, 521
MseI TTAA 3 cut(s) 177, 717, 1130
Msp20I TGGCCA 2 cut(s) 314, 521
MspI CCGG 2 cut(s) 82, 660
MspR9I CCNGG 2 cut(s) 83, 661
MunI CAATTG 1 cut(s) 597
MvnI CGCG 2 cut(s) 354, 624
MwoI GCNNNNNNNGC 7 cut(s) 87, 263, 272, 593, 836, 974, 1132
NciI CCSGG 2 cut(s) 83, 661
NdeII GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
NheI GCTAGC 2 cut(s) 1060, 1148
NlaIII CATG 2 cut(s) 285, 730
NlaIV GGNNCC 4 cut(s) 212, 604, 848, 1098
NmuCI GTSAC 1 cut(s) 986
NspV TTCGAA 1 cut(s) 231
PceI AGGCCT 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 371, 1155
PkrI GCNGC 3 cut(s) 138, 535, 967
PleI GAGTC 4 cut(s) 7, 179, 574, 1093
PpsI GAGTC 4 cut(s) 7, 179, 574, 1093
PpuMI RGGWCCY 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 603
PspN4I GGNNCC 4 cut(s) 212, 604, 848, 1098
PspPI GGNCC 4 cut(s) 274, 580, 603, 846
PspPPI RGGWCCY 1 cut(s) 603
PsuI RGATCY 2 cut(s) 378, 1043
RsaI GTAC 3 cut(s) 212, 955, 1144
RsaNI GTAC 3 cut(s) 211, 954, 1143
SaqAI TTAA 3 cut(s) 177, 717, 1130
SatI GCNGC 3 cut(s) 137, 534, 966
Sau3AI GATC 8 cut(s) 91, 158, 184, 378, 388, 732, 1001, 1043
Sau96I GGNCC 4 cut(s) 274, 580, 603, 846
ScaI AGTACT 1 cut(s) 1144
SchI GAGTC 4 cut(s) 7, 180, 575, 1094
ScrFI CCNGG 2 cut(s) 83, 661
SfaNI GCATC 2 cut(s) 646, 964
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 3 cut(s) 580, 603, 846
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SseBI AGGCCT 1 cut(s) 366
SsiI CCGC 4 cut(s) 136, 348, 409, 837
SspI AATATT 1 cut(s) 322
SspMI CTAG 6 cut(s) 65, 207, 609, 944, 1061, 1149
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 81, 659
TaqI TCGA 4 cut(s) 183, 231, 1069, 1088
TatI WGTACW 1 cut(s) 1142
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 2 cut(s) 371, 1155
Tru1I TTAA 3 cut(s) 177, 717, 1130
Tru9I TTAA 3 cut(s) 177, 717, 1130
TscAI CASTG 2 cut(s) 363, 742
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 2 cut(s) 533, 965
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 3 cut(s) 818, 1068, 1156
TspRI CASTG 2 cut(s) 363, 742
VpaK11BI GGWCC 3 cut(s) 580, 603, 846
XapI RAATTY 2 cut(s) 6, 41
XbaI TCTAGA 1 cut(s) 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 6 cut(s) 65, 207, 609, 944, 1061, 1149
ZrmI AGTACT 1 cut(s) 1144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.