Rorug03G0096400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000358
Physical Location & Seq
Forward (+)
7518423 .. 7522589
4167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0096400.1

Sequence Viewer

Length: 1290 bp
ATGGTTGAGGAAGCCGAAGATCATTTAGCATATCCAAGCACAACTAATTGGATTGATGAGATGAATGGCATGGAAGATGAAGAATGGGCAATGGTGCAGAGGAAAGGGAACCAATTTGTAGTGAATGATCAGCCTTTCTATGTGAATGGATTCAACACTTACTGGTTAATGGTTTTTGCTGCTGATCAGTCCACAAGAGGAAAGGTCACTGATGTGTTCAAACAGGCAGCTTCAGTGGGACTAACTATTTGTAGAACTTGGGCATTTAACGACGGCCAGTGGCGAGCTCTTCAGAAATCTCCAGGAGTTTATGATGAAGAAGTTTTCAAGGCTCTGGATTTTGTGATAAGTGAAGCAAAGAAGTACAAGATCAGACTCATATTGTCATTGACTAACAACTGGGATGCATATGGTGGAAAACCACAATATGTCAAATGGGGAAAAACAGCTGGCCTGAACTTGACATCGGATGACGACTTCTTCACTCATCCAACACTCAAAAGCTACTACAAGGCCCATGTTAAGACGGTGCTTAATCGAGTGAATACCCTCACCAACATAACTTACAAGGATGATCCCACTGTTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACTTCAGATCCTTCCGGTGATAAACTGCAGGAATGGATACAAGAAATGGCAGTTTTCGTTAAGAGTGTGGATCCAAAGCACCTTGTGGAAATTGGTTTGGAAGGATTTTATGGCCCCTCAACACTTAACAGAGTTCAGTTCAATCCTAACACATACGCTCAACAAGTTGGCACTGATTTCATAAGGAACCACCAGGTCTTGGGTGTTGATTTTGCTTCTGTTCATATCTATGCAGACTCTTGGATTTCGCAATCAATTTCTGATGTCCATCTTCAATTCACCGAGTCATGGATAAAAGCTCACATTGATGATGCGGAGAATTATCTTGGAATGCCTGTTGTTTTTGCTGAGTTTGGTGTGTCTACGAAAGACCCTGGCTACAATGTCTCATTTAGAGATACTCTAATCAACAGTGTGTACAAGGTCCTCTTGAACTCCACTAAGAAAGGAGGGAGTGGAGGTGGGAGTCTTTTGTGGCAGCTCTTCCCTGAAGGAACAGATTACATGGATGACGGCTATGCAATTGTTCTCTCGAAATCTCCTTCGACATCAAACATCATAGCCCTTCACTCCACAAGACTTGCCATCTTCAACTCCAGATGTGCTTGGAAATGCAAATGGGGTTGCAGGAAGAAGAGTCCGCTAGAGTTCCTATACAACGATGTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

429

Amino Acids

48.74

Weight (kDa)

5.45

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 31 - 365 4.2e-50 GH family 5 beta-mannosidase-like
Cellulase PF00150 43 - 331 2.1e-15 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 817
AccI GTMKAC 1 cut(s) 980
AciI CCGC 2 cut(s) 932, 1259
AclWI GGATC 4 cut(s) 569, 620, 683, 696
AcoI YGGCCR 1 cut(s) 274
AcuI CTGAAG 4 cut(s) 216, 275, 606, 1128
AdeI CACNNNGTG 1 cut(s) 703
AfaI GTAC 2 cut(s) 365, 1037
AfiI CCNNNNNNNGG 2 cut(s) 817, 906
AgsI TTSAA 7 cut(s) 154, 220, 328, 760, 893, 1051, 1210
AjnI CCWGG 3 cut(s) 301, 810, 991
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 6 cut(s) 230, 287, 449, 504, 917, 1099
AluI AGCT 6 cut(s) 230, 287, 449, 504, 917, 1099
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 1009
AlwI GGATC 4 cut(s) 569, 620, 683, 696
AoxI GGCC 4 cut(s) 274, 451, 513, 730
ApeKI GCWGC 3 cut(s) 179, 227, 1096
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 3 cut(s) 514, 731, 1042
AsuHPI GGTGA 3 cut(s) 544, 647, 889
AvaII GGWCC 1 cut(s) 1042
BamHI GGATCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 3 cut(s) 166, 239, 1108
BccI CCATC 2 cut(s) 894, 1211
BceAI ACGGC 2 cut(s) 289, 1147
BciT130I CCWGG 3 cut(s) 303, 812, 993
BciVI GTATCC 1 cut(s) 648
BclI TGATCA 2 cut(s) 127, 184
BcoDI GTCTC 1 cut(s) 1009
BfaI CTAG 1 cut(s) 1262
BfmI CTRYAG 1 cut(s) 644
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 3 cut(s) 180, 228, 1097
BlsI GCNGC 3 cut(s) 181, 229, 1098
Bme1390I CCNGG 3 cut(s) 303, 812, 993
Bme18I GGWCC 1 cut(s) 1042
BmgT120I GGNCC 3 cut(s) 514, 731, 1042
BmiI GGNNCC 4 cut(s) 110, 690, 733, 806
BmrFI CCNGG 3 cut(s) 303, 812, 993
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 3 cut(s) 394, 605, 919
BmuI ACTGGG 1 cut(s) 409
BpmI CTGGAG 2 cut(s) 285, 1198
BsaBI GATNNNNATC 1 cut(s) 885
BsaJI CCNNGG 1 cut(s) 991
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 1063, 1093
Bsc4I CCNNNNNNNGG 2 cut(s) 817, 906
Bse1I ACTGG 3 cut(s) 167, 277, 404
Bse3DI GCAATG 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 3 cut(s) 303, 812, 993
BseDI CCNNGG 1 cut(s) 991
BseGI GGATG 5 cut(s) 409, 475, 487, 577, 1132
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 2 cut(s) 817, 906
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 957
BseNI ACTGG 3 cut(s) 167, 277, 404
BseXI GCAGC 3 cut(s) 166, 239, 1108
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 4 cut(s) 276, 453, 515, 732
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 817, 906
BsmAI GTCTC 1 cut(s) 1009
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 954
BsnI GGCC 4 cut(s) 276, 453, 515, 732
Bsp1286I GDGCHC 1 cut(s) 289
Bsp1407I TGTACA 1 cut(s) 1035
Bsp143I GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
BspACI CCGC 2 cut(s) 932, 1259
BspANI GGCC 4 cut(s) 276, 453, 515, 732
BspCNI CTCAG 1 cut(s) 958
BspLI GGNNCC 4 cut(s) 110, 690, 733, 806
BspMAI CTGCAG 1 cut(s) 648
BspPI GGATC 4 cut(s) 569, 620, 683, 696
BspQI GCTCTTC 2 cut(s) 294, 1106
BsrDI GCAATG 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 1035
BsrI ACTGG 3 cut(s) 167, 277, 404
BssECI CCNNGG 1 cut(s) 991
BssMI GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
Bst2UI CCWGG 3 cut(s) 303, 812, 993
Bst4CI ACNGT 3 cut(s) 529, 583, 1031
Bst6I CTCTTC 3 cut(s) 294, 1106, 1247
BstAUI TGTACA 1 cut(s) 1035
BstC8I GCNNGC 2 cut(s) 285, 451
BstDEI CTNAG 2 cut(s) 966, 1059
BstF5I GGATG 5 cut(s) 409, 475, 487, 577, 1132
BstKTI GATC 7 cut(s) 22, 130, 187, 372, 577, 628, 691
BstMAI GTCTC 1 cut(s) 1009
BstMBI GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
BstNI CCWGG 3 cut(s) 303, 812, 993
BstSCI CCNGG 3 cut(s) 301, 810, 991
BstSFI CTRYAG 1 cut(s) 644
BstV1I GCAGC 3 cut(s) 166, 239, 1108
BstX2I RGATCY 2 cut(s) 625, 688
BstYI RGATCY 2 cut(s) 625, 688
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 4 cut(s) 276, 453, 515, 732
BtsCI GGATG 5 cut(s) 409, 475, 487, 577, 1132
BtsIMutI CAGTG 6 cut(s) 207, 240, 284, 579, 789, 1036
Cac8I GCNNGC 2 cut(s) 285, 451
Cfr13I GGNCC 3 cut(s) 514, 731, 1042
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 2 cut(s) 364, 1036
CspCI CAANNNNNGTGG 4 cut(s) 568, 603, 1180, 1215
CviAII CATG 4 cut(s) 70, 518, 906, 1123
CviQI GTAC 2 cut(s) 364, 1036
DdeI CTNAG 2 cut(s) 966, 1059
DpnI GATC 7 cut(s) 21, 129, 186, 371, 576, 627, 690
DpnII GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
DraIII CACNNNGTG 1 cut(s) 703
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 294, 1106, 1247
EarI CTCTTC 3 cut(s) 294, 1106, 1247
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 1042
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 4 cut(s) 216, 275, 606, 1128
EcoICRI GAGCTC 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 1042
EcoRII CCWGG 3 cut(s) 301, 810, 991
EcoT22I ATGCAT 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 4 cut(s) 73, 521, 909, 1126
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FaqI GGGAC 1 cut(s) 252
FatI CATG 4 cut(s) 69, 517, 905, 1122
FauNDI CATATG 1 cut(s) 409
FbaI TGATCA 2 cut(s) 127, 184
FblI GTMKAC 1 cut(s) 980
Fnu4HI GCNGC 3 cut(s) 180, 228, 1097
FokI GGATG 5 cut(s) 416, 474, 482, 584, 1139
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 3 cut(s) 180, 228, 1097
FspBI CTAG 1 cut(s) 1262
GluI GCNGC 3 cut(s) 180, 228, 1097
GsuI CTGGAG 2 cut(s) 285, 1198
HaeIII GGCC 4 cut(s) 276, 453, 515, 732
HapII CCGG 1 cut(s) 633
Hin1II CATG 4 cut(s) 73, 521, 909, 1126
HinfI GANTC 6 cut(s) 150, 375, 854, 902, 1084, 1255
HpaII CCGG 1 cut(s) 633
HphI GGTGA 3 cut(s) 544, 647, 889
Hpy166II GTNNAC 3 cut(s) 192, 981, 1036
Hpy188I TCNGA 5 cut(s) 294, 374, 469, 625, 880
Hpy188III TCNNGA 4 cut(s) 335, 1048, 1150, 1215
Hpy8I GTNNAC 3 cut(s) 192, 981, 1036
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 5 cut(s) 639, 713, 1103, 1170, 1193
HpyCH4III ACNGT 3 cut(s) 529, 583, 1031
HpyCH4V TGCA 8 cut(s) 97, 407, 618, 646, 851, 1139, 1233, 1245
HpyF3I CTNAG 2 cut(s) 966, 1059
Hsp92II CATG 4 cut(s) 73, 521, 909, 1126
Ksp22I TGATCA 2 cut(s) 127, 184
Kzo9I GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
LguI GCTCTTC 2 cut(s) 294, 1106
Lsp1109I GCAGC 3 cut(s) 166, 239, 1108
LweI GCATC 3 cut(s) 394, 605, 919
MabI ACCWGGT 1 cut(s) 810
MaeI CTAG 1 cut(s) 1262
MaeIII GTNAC 1 cut(s) 205
MalI GATC 7 cut(s) 21, 129, 186, 371, 576, 627, 690
MboI GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
MfeI CAATTG 1 cut(s) 1140
MflI RGATCY 2 cut(s) 625, 688
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 7 cut(s) 46, 113, 708, 873, 893, 937, 1140
MlyI GAGTC 5 cut(s) 369, 848, 911, 1093, 1264
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 8 cut(s) 93, 191, 560, 621, 745, 1055, 1061, 1070
Mph1103I ATGCAT 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 6 cut(s) 167, 267, 522, 534, 678, 744
MslI CAYNNNNRTG 3 cut(s) 212, 846, 924
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 3 cut(s) 303, 812, 993
MunI CAATTG 1 cut(s) 1140
Mva1269I GAATGC 1 cut(s) 954
MvaI CCWGG 3 cut(s) 303, 812, 993
NdeI CATATG 1 cut(s) 409
NdeII GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
NlaIII CATG 4 cut(s) 73, 521, 909, 1126
NlaIV GGNNCC 4 cut(s) 110, 690, 733, 806
NmuCI GTSAC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 409
OliI CACNNNNGTG 1 cut(s) 212
PciSI GCTCTTC 2 cut(s) 294, 1106
PctI GAATGC 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 817
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 3 cut(s) 181, 229, 1098
PleI GAGTC 5 cut(s) 369, 848, 910, 1092, 1263
PpsI GAGTC 5 cut(s) 369, 848, 910, 1092, 1263
PpuMI RGGWCCY 1 cut(s) 1042
Psp124BI GAGCTC 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 1042
Psp6I CCWGG 3 cut(s) 301, 810, 991
PspGI CCWGG 3 cut(s) 301, 810, 991
PspN4I GGNNCC 4 cut(s) 110, 690, 733, 806
PspPI GGNCC 3 cut(s) 514, 731, 1042
PspPPI RGGWCCY 1 cut(s) 1042
PstI CTGCAG 1 cut(s) 648
PsuI RGATCY 2 cut(s) 625, 688
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 365, 1037
RsaNI GTAC 2 cut(s) 364, 1036
RseI CAYNNNNRTG 3 cut(s) 212, 846, 924
SacI GAGCTC 1 cut(s) 289
SapI GCTCTTC 2 cut(s) 294, 1106
SaqAI TTAA 6 cut(s) 167, 267, 522, 534, 678, 744
SatI GCNGC 3 cut(s) 180, 228, 1097
Sau3AI GATC 7 cut(s) 19, 127, 184, 369, 574, 625, 688
Sau96I GGNCC 3 cut(s) 514, 731, 1042
SchI GAGTC 5 cut(s) 369, 848, 911, 1093, 1264
ScrFI CCNGG 3 cut(s) 303, 812, 993
SduI GDGCHC 1 cut(s) 289
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 3 cut(s) 394, 605, 919
SfcI CTRYAG 1 cut(s) 644
SinI GGWCC 1 cut(s) 1042
SmiMI CAYNNNNRTG 3 cut(s) 212, 846, 924
Sse9I AATT 7 cut(s) 46, 113, 708, 873, 893, 937, 1140
SsiI CCGC 2 cut(s) 932, 1259
SspMI CTAG 1 cut(s) 1262
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 301, 810, 991
TaaI ACNGT 3 cut(s) 529, 583, 1031
TaqI TCGA 4 cut(s) 538, 613, 1151, 1163
TasI AATT 7 cut(s) 46, 113, 708, 873, 893, 937, 1140
TatI WGTACW 2 cut(s) 363, 1035
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 6 cut(s) 167, 267, 522, 534, 678, 744
Tru9I TTAA 6 cut(s) 167, 267, 522, 534, 678, 744
TscAI CASTG 6 cut(s) 214, 240, 284, 586, 796, 1036
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 3 cut(s) 179, 227, 1096
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 6 cut(s) 77, 93, 330, 617, 787, 830
TspRI CASTG 6 cut(s) 214, 240, 284, 586, 796, 1036
Van91I CCANNNNNTGG 1 cut(s) 817
VpaK11BI GGWCC 1 cut(s) 1042
XmiI GTMKAC 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 1 cut(s) 1262
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.