pycom17g10160

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000358
Physical Location & Seq
Reverse (-)
7814580 .. 7816711
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g10160.4

Sequence Viewer

Length: 1221 bp
ATGGGCATCAGTGGAGGTTTGGTCAGGAGTGTTTTCTCGAGAAACCGATCTTTCAGGACACATGAGAGCAATGTGAGGAGCAATGTGACTGAGAGGAGAAGATGGAGCTCGGTTAGATCGTACCTATGTGGAGACGAACATAATTCAGTCATGGCAGAGAATGATTCAGCTTCAGTTAAGAGCTCTGTGGCTACAGCCGCCATGCAGTTCAATTCAGTTTTAGCTGTTGCAGACGAAGATTCTAGTTCGGTTAGGAGCTCCGAGGCAACTGTCACGCAACCGATGCCAGAAGACTTGAAAAACAAGGGAAACATCAGAAGAGAAGCAACTAAGGTAGATGTGGAAATGGCAAAGACAGAATCTTCGGTCTCCAAAACAATGTCTGAGGAGCGTGCAGCAATCATCATCCAGTCGGCATTTAGAGGCTTTCGGATTAGGTGCCGAAATGGAGGAATTAGATCCAAGGATGGTGAGCAGGAGCTTCTTGTTGGAGTGGAAAGTCCGAGTAGGGAGTCTCTAGGCACATCGGTAGAAGTTCAAACGGGAAATTCTGTGGAAGTTTACTCGATTCAAGAAGAAAATTCGGCTGCTCACCACCGGACACAAGAGAAAGCTAGAGCGCAGGCGCTAAAGTTGAAGGAAGAATGGGATGCCAGCACAGTTAGTAGCAACATATCAAGAATGAGAATGCAGAACAGATTGGAAGCAACAACAAGGCGGGAGAGAGCACTGGCGTACGCCTTTTCACAACAGCTAAGGATCTGCTCAAAGAAAAGGCACACCACATCTGATGGCACAGAACAGAACATGGGTTGGAGCTGGCTAGAACGGTGGATGGCAACCCGCCCTGCTGAAATCTCCTCCGCAGAAAGTCATACAAGCAACCACGTTGAACCAATTCACAGCAGCCAAAGATTTGTCATCGGAAAGAGATTGTTCGACATTGCAGGTGAAGAAAAAGAGAGCTGCGGATCTAATGAAGTCGGTGTCCCATTTGATAACTTTCCGGTACCAGCAGAAGAGAAAGATGGCTTCAGTCCAACTAAGAACAGATTCAAGGCTACGAGAAGCCTATCGAGGCGAAAATCGATGCCAAGCTACGAGTGTGGGAAAGAGTATCCCAAGGTAAGCAAGAAGGATTGTTCGAGGGAAGCCGAAAGAGATGAAGAGCGGACCGAAAAGCAAACTGGGCGAAGGAAGTGCAGAAATACTTCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

407

Amino Acids

45.7

Weight (kDa)

9.26

Isoelectric Point (pI)

68.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 938
Acc36I ACCTGC 1 cut(s) 938
Acc65I GGTACC 1 cut(s) 1009
AccB1I GGYRCC 2 cut(s) 438, 1009
AccBSI CCGCTC 1 cut(s) 1171
AciI CCGC 6 cut(s) 198, 718, 844, 864, 969, 1171
AclWI GGATC 3 cut(s) 453, 767, 979
AcsI RAATTY 2 cut(s) 547, 580
AcuI CTGAAG 2 cut(s) 156, 1018
AfaI GTAC 3 cut(s) 122, 737, 1011
AgsI TTSAA 7 cut(s) 211, 298, 539, 572, 637, 893, 1057
Alw21I GWGCWC 4 cut(s) 110, 185, 260, 730
Alw26I GTCTC 3 cut(s) 126, 373, 519
AlwI GGATC 3 cut(s) 453, 767, 979
Ama87I CYCGRG 1 cut(s) 37
ApeKI GCWGC 4 cut(s) 395, 587, 906, 966
ApoI RAATTY 2 cut(s) 547, 580
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
Asp700I GAANNNNTTC 3 cut(s) 897, 1052, 1210
Asp718I GGTACC 1 cut(s) 1009
AspLEI GCGC 2 cut(s) 622, 628
AspS9I GGNCC 1 cut(s) 1173
AsuHPI GGTGA 3 cut(s) 482, 584, 962
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 1 cut(s) 1173
BanI GGYRCC 2 cut(s) 438, 1009
BanII GRGCYC 3 cut(s) 110, 185, 260
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 4 cut(s) 110, 185, 260, 730
BbvI GCAGC 4 cut(s) 407, 574, 918, 953
BccI CCATC 5 cut(s) 96, 461, 785, 829, 1022
BcgI CGANNNNNNTGC 2 cut(s) 1182, 1216
BciVI GTATCC 1 cut(s) 1128
BcoDI GTCTC 3 cut(s) 126, 373, 519
BfaI CTAG 4 cut(s) 243, 518, 615, 824
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 629
BfuAI ACCTGC 1 cut(s) 938
BfuI GTATCC 1 cut(s) 1128
BisI GCNGC 5 cut(s) 198, 396, 588, 907, 967
BlsI GCNGC 5 cut(s) 199, 397, 589, 908, 968
Bme18I GGWCC 1 cut(s) 1173
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 1173
BmiI GGNNCC 2 cut(s) 440, 1011
BmrI ACTGGG 1 cut(s) 1197
BmsI GCATC 4 cut(s) 15, 273, 640, 1080
BmuI ACTGGG 1 cut(s) 1197
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 755
Bsa29I ATCGAT 1 cut(s) 1088
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 3 cut(s) 261, 462, 1122
BsaWI WCCGGW 2 cut(s) 597, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse1I ACTGG 3 cut(s) 409, 735, 1192
Bse3DI GCAATG 3 cut(s) 76, 88, 942
BseCI ATCGAT 1 cut(s) 1088
BseDI CCNNGG 3 cut(s) 261, 462, 1122
BseGI GGATG 4 cut(s) 405, 472, 655, 840
BseMI GCAATG 3 cut(s) 76, 88, 942
BseMII CTCAG 2 cut(s) 81, 375
BseNI ACTGG 3 cut(s) 409, 735, 1192
BseRI GAGGAG 4 cut(s) 91, 109, 401, 850
BseXI GCAGC 4 cut(s) 407, 574, 918, 953
BsgI GTGCAG 1 cut(s) 414
BshNI GGYRCC 2 cut(s) 438, 1009
BshVI ATCGAT 1 cut(s) 1088
BsiHKAI GWGCWC 4 cut(s) 110, 185, 260, 730
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 598, 1007
BsiWI CGTACG 1 cut(s) 735
BslFI GGGAC 1 cut(s) 974
BsmAI GTCTC 3 cut(s) 126, 373, 519
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 974
BsmI GAATGC 1 cut(s) 693
Bso31I GGTCTC 1 cut(s) 373
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 4 cut(s) 110, 185, 260, 730
Bsp143I GATC 5 cut(s) 47, 116, 458, 759, 971
BspACI CCGC 6 cut(s) 198, 718, 844, 864, 969, 1171
BspCNI CTCAG 2 cut(s) 82, 376
BspDI ATCGAT 1 cut(s) 1088
BspLI GGNNCC 2 cut(s) 440, 1011
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 3 cut(s) 453, 767, 979
BspQI GCTCTTC 1 cut(s) 1161
BspT107I GGYRCC 2 cut(s) 438, 1009
BspTNI GGTCTC 1 cut(s) 373
BsrBI CCGCTC 1 cut(s) 1171
BsrDI GCAATG 3 cut(s) 76, 88, 942
BsrI ACTGG 3 cut(s) 409, 735, 1192
BssECI CCNNGG 3 cut(s) 261, 462, 1122
BssMI GATC 5 cut(s) 47, 116, 458, 759, 971
BssT1I CCWWGG 2 cut(s) 462, 1122
Bst4CI ACNGT 3 cut(s) 271, 661, 831
Bst6I CTCTTC 3 cut(s) 313, 1014, 1161
BstAPI GCANNNNNTGC 1 cut(s) 283
BstC8I GCNNGC 4 cut(s) 393, 624, 655, 821
BstDEI CTNAG 5 cut(s) 90, 330, 384, 755, 1044
BstF5I GGATG 4 cut(s) 405, 472, 655, 840
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 2 cut(s) 622, 628
BstKTI GATC 5 cut(s) 50, 119, 461, 762, 974
BstMAI GTCTC 3 cut(s) 126, 373, 519
BstMBI GATC 5 cut(s) 47, 116, 458, 759, 971
BstMWI GCNNNNNNNGC 3 cut(s) 197, 283, 1189
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 407, 574, 918, 953
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 3 cut(s) 458, 759, 971
BstYI RGATCY 3 cut(s) 458, 759, 971
Bsu15I ATCGAT 1 cut(s) 1088
BsuI GTATCC 1 cut(s) 1128
BsuTUI ATCGAT 1 cut(s) 1088
BtsCI GGATG 4 cut(s) 405, 472, 655, 840
BtsIMutI CAGTG 2 cut(s) 16, 728
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 4 cut(s) 393, 624, 655, 821
CfoI GCGC 2 cut(s) 622, 628
Cfr13I GGNCC 1 cut(s) 1173
ClaI ATCGAT 1 cut(s) 1088
CpoI CGGWCCG 1 cut(s) 1173
Csp6I GTAC 3 cut(s) 121, 736, 1010
CspI CGGWCCG 1 cut(s) 1173
CviAII CATG 4 cut(s) 62, 151, 202, 808
CviQI GTAC 3 cut(s) 121, 736, 1010
DdeI CTNAG 5 cut(s) 90, 330, 384, 755, 1044
DpnI GATC 5 cut(s) 49, 118, 460, 761, 973
DpnII GATC 5 cut(s) 47, 116, 458, 759, 971
Eam1104I CTCTTC 3 cut(s) 313, 1014, 1161
EarI CTCTTC 3 cut(s) 313, 1014, 1161
Ecl136II GAGCTC 3 cut(s) 108, 183, 258
Eco130I CCWWGG 2 cut(s) 462, 1122
Eco24I GRGCYC 3 cut(s) 110, 185, 260
Eco31I GGTCTC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 1173
Eco53kI GAGCTC 3 cut(s) 108, 183, 258
Eco57I CTGAAG 2 cut(s) 156, 1018
Eco88I CYCGRG 1 cut(s) 37
EcoICRI GAGCTC 3 cut(s) 108, 183, 258
EcoT14I CCWWGG 2 cut(s) 462, 1122
EcoT38I GRGCYC 3 cut(s) 110, 185, 260
ErhI CCWWGG 2 cut(s) 462, 1122
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 4 cut(s) 65, 154, 205, 811
FaiI YATR 8 cut(s) 63, 127, 141, 152, 203, 674, 809, 876
FaqI GGGAC 1 cut(s) 974
FatI CATG 4 cut(s) 61, 150, 201, 807
FauI CCCGC 2 cut(s) 711, 851
Fnu4HI GCNGC 5 cut(s) 198, 396, 588, 907, 967
FokI GGATG 4 cut(s) 392, 479, 662, 847
FriOI GRGCYC 3 cut(s) 110, 185, 260
Fsp4HI GCNGC 5 cut(s) 198, 396, 588, 907, 967
FspBI CTAG 4 cut(s) 243, 518, 615, 824
GlaI GCGC 2 cut(s) 621, 627
GluI GCNGC 5 cut(s) 198, 396, 588, 907, 967
HaeII RGCGCY 1 cut(s) 629
HapII CCGG 2 cut(s) 598, 1007
HhaI GCGC 2 cut(s) 622, 628
Hin1II CATG 4 cut(s) 65, 154, 205, 811
Hin6I GCGC 2 cut(s) 620, 626
HinP1I GCGC 2 cut(s) 620, 626
HinfI GANTC 6 cut(s) 164, 239, 359, 512, 568, 1053
HpaII CCGG 2 cut(s) 598, 1007
HphI GGTGA 3 cut(s) 482, 584, 962
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 7 cut(s) 262, 317, 385, 432, 504, 790, 926
Hpy188III TCNNGA 6 cut(s) 25, 37, 39, 55, 572, 678
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 3 cut(s) 631, 1129, 1188
HpyCH4III ACNGT 3 cut(s) 271, 661, 831
HpyCH4IV ACGT 1 cut(s) 888
HpyCH4V TGCA 6 cut(s) 205, 230, 395, 691, 947, 1203
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 283, 1189
HpyF3I CTNAG 5 cut(s) 90, 330, 384, 755, 1044
HpySE526I ACGT 1 cut(s) 888
Hsp92II CATG 4 cut(s) 65, 154, 205, 811
HspAI GCGC 2 cut(s) 620, 626
KpnI GGTACC 1 cut(s) 1013
Kzo9I GATC 5 cut(s) 47, 116, 458, 759, 971
LguI GCTCTTC 1 cut(s) 1161
LmnI GCTCC 7 cut(s) 78, 105, 255, 263, 388, 478, 816
Lsp1109I GCAGC 4 cut(s) 407, 574, 918, 953
LweI GCATC 4 cut(s) 15, 273, 640, 1080
MaeI CTAG 4 cut(s) 243, 518, 615, 824
MaeII ACGT 1 cut(s) 888
MaeIII GTNAC 2 cut(s) 85, 271
MalI GATC 5 cut(s) 49, 118, 460, 761, 973
MbiI CCGCTC 1 cut(s) 1171
MboI GATC 5 cut(s) 47, 116, 458, 759, 971
MflI RGATCY 3 cut(s) 458, 759, 971
MhlI GDGCHC 4 cut(s) 110, 185, 260, 730
MluCI AATT 6 cut(s) 142, 211, 453, 547, 580, 897
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 3 cut(s) 469, 794, 1064
MroXI GAANNNNTTC 3 cut(s) 897, 1052, 1210
MseI TTAA 1 cut(s) 177
MspI CCGG 2 cut(s) 598, 1007
Mva1269I GAATGC 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 197, 283, 1189
NdeII GATC 5 cut(s) 47, 116, 458, 759, 971
NlaIII CATG 4 cut(s) 65, 154, 205, 811
NlaIV GGNNCC 2 cut(s) 440, 1011
NmuCI GTSAC 2 cut(s) 85, 271
PaeR7I CTCGAG 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 938
PciSI GCTCTTC 1 cut(s) 1161
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 1 cut(s) 693
PdmI GAANNNNTTC 3 cut(s) 897, 1052, 1210
PfeI GAWTC 5 cut(s) 164, 239, 359, 568, 1053
Pfl23II CGTACG 1 cut(s) 735
PkrI GCNGC 5 cut(s) 199, 397, 589, 908, 968
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp124BI GAGCTC 3 cut(s) 110, 185, 260
PspLI CGTACG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 440, 1011
PspPI GGNCC 1 cut(s) 1173
PsuI RGATCY 3 cut(s) 458, 759, 971
RsaI GTAC 3 cut(s) 122, 737, 1011
RsaNI GTAC 3 cut(s) 121, 736, 1010
Rsr2I CGGWCCG 1 cut(s) 1173
RsrII CGGWCCG 1 cut(s) 1173
SacI GAGCTC 3 cut(s) 110, 185, 260
SapI GCTCTTC 1 cut(s) 1161
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 5 cut(s) 198, 396, 588, 907, 967
Sau3AI GATC 5 cut(s) 47, 116, 458, 759, 971
Sau96I GGNCC 1 cut(s) 1173
SchI GAGTC 1 cut(s) 521
SduI GDGCHC 4 cut(s) 110, 185, 260, 730
SfaNI GCATC 4 cut(s) 15, 273, 640, 1080
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 37
SinI GGWCC 1 cut(s) 1173
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 6 cut(s) 142, 211, 453, 547, 580, 897
SsiI CCGC 6 cut(s) 198, 718, 844, 864, 969, 1171
SspMI CTAG 4 cut(s) 243, 518, 615, 824
SstI GAGCTC 3 cut(s) 110, 185, 260
StyI CCWWGG 2 cut(s) 462, 1122
TaaI ACNGT 3 cut(s) 271, 661, 831
TaiI ACGT 1 cut(s) 891
TaqI TCGA 6 cut(s) 38, 566, 939, 1076, 1088, 1145
TaqII GACCGA 2 cut(s) 355, 1190
TasI AATT 6 cut(s) 142, 211, 453, 547, 580, 897
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 5 cut(s) 164, 239, 359, 568, 1053
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 2 cut(s) 16, 735
TseFI GTSAC 2 cut(s) 85, 271
TseI GCWGC 4 cut(s) 395, 587, 906, 966
Tsp45I GTSAC 2 cut(s) 85, 271
TspDTI ATGAA 3 cut(s) 993, 1179, 1203
TspRI CASTG 2 cut(s) 16, 735
VpaK11BI GGWCC 1 cut(s) 1173
XapI RAATTY 2 cut(s) 547, 580
XhoI CTCGAG 1 cut(s) 37
XmnI GAANNNNTTC 3 cut(s) 897, 1052, 1210
XspI CTAG 4 cut(s) 243, 518, 615, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.