Rh6CG353800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000358
Physical Location & Seq
Forward (+)
54280077 .. 54280526
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG353800.1

Sequence Viewer

Length: 450 bp
ATGTGTGTATTAGAGGAGCTAAATTTGGCTGAATGTAAACTAGTCACCGACGTTGGAGGTGTGGCAATCTCCCCAATTCGGACCCTCAAGAAATTGAACTTGAGTGAGGTGTTTGGCATGACAAACCAGACCCTTGTTGCTGTTGCTCAGAATTGCCTCAACTTGGAGGTGCTTACTTTGAATGGTATTATGCGGGTGACTGGAGTTGGTATTCGTGCATACTCGGGTCACAAGTGCTTGCAATCCCTTGATCTGTTACATTATTGCTGTAGAATTAGTGGAGCTGATTTGGAACAAGCAGCGCTTGGATGCCCTTCATTTAAGTCTATTGTGATGGACGAATGGTGCAAAGAAGATCTGTTAAAGGAAATGCAAGAGACTACTGTTAAAAGTTCATGCAGTTCATTAAGTAGTGAAGGTTTGGGATGCTTTTCTGTTTCAAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

149

Amino Acids

16.03

Weight (kDa)

5.14

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 2 - 109 1.3e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 22
AfeI AGCGCT 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 78, 163
AgsI TTSAA 3 cut(s) 97, 181, 441
AhlI ACTAGT 1 cut(s) 40
AluBI AGCT 2 cut(s) 19, 284
AluI AGCT 2 cut(s) 19, 284
Alw26I GTCTC 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 223
Aor51HI AGCGCT 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 37, 208
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 371
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 268
BfoI RGCGCY 1 cut(s) 305
BglII AGATCT 1 cut(s) 355
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 2 cut(s) 299, 416
BpmI CTGGAG 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 71, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 163
Bse1I ACTGG 1 cut(s) 205
BseGI GGATG 2 cut(s) 314, 431
BseLI CCNNNNNNNGG 2 cut(s) 78, 163
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 78, 163
BsmAI GTCTC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 223
Bsp143I GATC 2 cut(s) 250, 355
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 205
BssMI GATC 2 cut(s) 250, 355
Bst4CI ACNGT 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 147, 447
BstF5I GGATG 2 cut(s) 314, 431
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 253, 358
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 250, 355
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BtsCI GGATG 2 cut(s) 314, 431
Cac8I GCNNGC 1 cut(s) 239
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 2 cut(s) 118, 396
CviJI RGCY 3 cut(s) 19, 29, 284
CviKI_1 RGCY 3 cut(s) 19, 29, 284
DdeI CTNAG 2 cut(s) 147, 447
DpnI GATC 2 cut(s) 252, 357
DpnII GATC 2 cut(s) 250, 355
Eco47I GGWCC 1 cut(s) 81
Eco47III AGCGCT 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 223
FaeI CATG 2 cut(s) 121, 399
FaiI YATR 4 cut(s) 119, 191, 220, 397
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 2 cut(s) 117, 395
FauI CCCGC 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 2 cut(s) 321, 438
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 305
HhaI GCGC 1 cut(s) 304
Hin1II CATG 2 cut(s) 121, 399
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HphI GGTGA 2 cut(s) 37, 208
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 81, 150
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 324, 410
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 218, 241, 348, 373, 399
HpyF3I CTNAG 2 cut(s) 147, 447
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 121, 399
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 250, 355
LmnI GCTCC 2 cut(s) 16, 281
LpnPI CCDG 2 cut(s) 140, 186
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 2 cut(s) 299, 416
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 43, 196, 227, 255
MalI GATC 2 cut(s) 252, 357
MboI GATC 2 cut(s) 250, 355
MboII GAAGA 1 cut(s) 365
MflI RGATCY 1 cut(s) 355
MluCI AATT 5 cut(s) 22, 75, 92, 151, 273
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 6 cut(s) 7, 50, 95, 100, 160, 167
MseI TTAA 4 cut(s) 321, 362, 387, 407
NdeII GATC 2 cut(s) 250, 355
NlaIII CATG 2 cut(s) 121, 399
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 3 cut(s) 43, 196, 227
PkrI GCNGC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 355
SaqAI TTAA 4 cut(s) 321, 362, 387, 407
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 250, 355
Sau96I GGNCC 1 cut(s) 81
SetI ASST 7 cut(s) 21, 54, 61, 111, 171, 286, 421
SfaNI GCATC 2 cut(s) 299, 416
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 86, 100
SmoI CTYRAG 2 cut(s) 86, 100
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 5 cut(s) 22, 75, 92, 151, 273
SsiI CCGC 1 cut(s) 193
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 54
TasI AATT 5 cut(s) 22, 75, 92, 151, 273
Tru1I TTAA 4 cut(s) 321, 362, 387, 407
Tru9I TTAA 4 cut(s) 321, 362, 387, 407
TseFI GTSAC 3 cut(s) 43, 196, 227
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 3 cut(s) 43, 196, 227
TspDTI ATGAA 3 cut(s) 306, 384, 393
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 22
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.