FvH4_6g11150

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000672
Physical Location & Seq
Reverse (-)
6657227 .. 6657982
756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11150.t1

Sequence Viewer

Length: 756 bp
ATGAGCACCATATTTGAGAGACGTAAATATAAGTGCCGTGTTTTTGTAGTTAAGGAATGCGCCTACCAGTACCAGAGCAGAGCTGGCGTGGACGTGATTCCAATCAGATTCCATTGGTGGAAGGTATGTGGAAAGTTCAATCCAGATACCCGACGGCATGATATTGAAGAAAAAGTTTTGCTAAGGAGAACAACTCTCGAATTGAGGTTCTCGAGGGAGAAGGTATGTGAAAATGCAAAGACAAAGATGGAGAGATTTGCCAAGTATAAAAGGCTAATAGATGGGTCTCCGAGGGAAGCCAACGAGTTACGGAACAAATTGCGTAGGTACGTTCGCAACGAAGTGGGTCTTTCCCTAGATGATTATCCTCTTCTTATTGAGCAAATCTTGATTGTGCTTCAAGAACATGCCGTCCCCGATCAAAATATCGAGGTCCAAGCAATCAACTATATTTATAGATATACGGAGGAGGGCCTGTCCACGTTGTACGACATGGACGATGAACAGTACTATCGAGCCAAGCTGATTCCGGCAAATGAATCGTTCATCCAGGCTTTGGAGGAAGCGAGTCCACCTGCTGATGATGATGAATTGCAATGTGCTATTTGTATGGAAATGTTTGAGAAGCAAAAAGCAGATACCAGCATTACTCAGTTGCCCTGCTCACACTATTATCATCGAGATTGCATTGTCCCGTGGCTCCACATCAATCATGTCTGCCCTACTTGTCGACGCCCTTATGCTCCATCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

252

Amino Acids

29.91

Weight (kDa)

7.54

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 199 - 244 7e-12 Ring finger domain
zf-RING_11 PF17123 199 - 230 1.5e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 199 - 243 1.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 200 - 243 7.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 202 - 244 1.9e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 556
AccI GTMKAC 1 cut(s) 730
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 4 cut(s) 71, 329, 488, 509
AfiI CCNNNNNNNGG 1 cut(s) 556
AgsI TTSAA 3 cut(s) 139, 167, 401
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 549
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
AluBI AGCT 2 cut(s) 83, 523
AluI AGCT 2 cut(s) 83, 523
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 13, 291
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 1 cut(s) 472
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 433, 472
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 3 cut(s) 241, 275, 754
BceAI ACGGC 3 cut(s) 21, 170, 395
BcgI CGANNNNNNTGC 2 cut(s) 522, 556
BciT130I CCWGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 13, 291
BfaI CTAG 2 cut(s) 356, 750
BfuAI ACCTGC 1 cut(s) 583
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 1 cut(s) 551
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 433, 472
BmiI GGNNCC 1 cut(s) 701
BmrFI CCNGG 1 cut(s) 551
BplI GAGNNNNNCTC 2 cut(s) 178, 210
Bpu10I CCTNAGC 1 cut(s) 182
BsaBI GATNNNNATC 2 cut(s) 101, 363
BsaHI GRCGYC 1 cut(s) 733
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 290, 695
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 602
Bse8I GATNNNNATC 2 cut(s) 101, 363
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 290, 695
BseGI GGATG 1 cut(s) 546
BseJI GATNNNNATC 2 cut(s) 101, 363
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMI GCAATG 1 cut(s) 602
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 482
BshFI GGCC 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 2 cut(s) 398, 677
BslI CCNNNNNNNGG 1 cut(s) 556
BsmAI GTCTC 2 cut(s) 13, 291
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 398, 677
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 474
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 418
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 701
BspMI ACCTGC 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 602
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 290, 695
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 1 cut(s) 733
Bst2UI CCWGG 1 cut(s) 551
Bst4CI ACNGT 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 182, 651
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 1 cut(s) 546
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 13, 291
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 551
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 549
BsuRI GGCC 1 cut(s) 474
BtgI CCRYGG 1 cut(s) 695
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 433, 472
CseI GACGC 1 cut(s) 741
Csp6I GTAC 4 cut(s) 70, 328, 487, 508
CviAII CATG 4 cut(s) 158, 407, 493, 713
CviJI RGCY 8 cut(s) 83, 274, 299, 474, 518, 523, 554, 700
CviKI_1 RGCY 8 cut(s) 83, 274, 299, 474, 518, 523, 554, 700
CviQI GTAC 4 cut(s) 70, 328, 487, 508
DdeI CTNAG 2 cut(s) 182, 651
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 549
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 4 cut(s) 161, 410, 496, 716
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 398, 677
FatI CATG 4 cut(s) 157, 406, 492, 712
FblI GTMKAC 1 cut(s) 730
FokI GGATG 1 cut(s) 533
FspBI CTAG 2 cut(s) 356, 750
GlaI GCGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 530
HgaI GACGC 1 cut(s) 741
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 4 cut(s) 161, 410, 496, 716
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 731
HindII GTYRAC 1 cut(s) 731
HinfI GANTC 5 cut(s) 97, 108, 526, 539, 568
HpaII CCGG 1 cut(s) 530
Hpy166II GTNNAC 4 cut(s) 91, 480, 572, 731
Hpy188I TCNGA 2 cut(s) 107, 291
Hpy188III TCNNGA 6 cut(s) 143, 197, 211, 388, 401, 680
Hpy8I GTNNAC 4 cut(s) 91, 480, 572, 731
Hpy99I CGWCG 2 cut(s) 156, 735
HpyAV CCTTC 2 cut(s) 115, 214
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4IV ACGT 4 cut(s) 22, 93, 330, 482
HpyCH4V TGCA 3 cut(s) 236, 595, 687
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 2 cut(s) 182, 651
HpySE526I ACGT 4 cut(s) 22, 93, 330, 482
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 4 cut(s) 161, 410, 496, 716
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 2 cut(s) 705, 748
MaeI CTAG 2 cut(s) 356, 750
MaeII ACGT 4 cut(s) 22, 93, 330, 482
MaeIII GTNAC 1 cut(s) 306
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 2 cut(s) 179, 362
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 200, 317, 590
MlyI GAGTC 1 cut(s) 577
MnlI CCTC 8 cut(s) 198, 207, 285, 378, 424, 460, 463, 553
MseI TTAA 1 cut(s) 51
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 551
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 551
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 1 cut(s) 418
NlaIII CATG 4 cut(s) 161, 410, 496, 716
NlaIV GGNNCC 1 cut(s) 701
NspI RCATGY 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 495
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 97, 108, 526, 539
PflMI CCANNNNNTGG 1 cut(s) 556
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 549
PspGI CCWGG 1 cut(s) 549
PspN4I GGNNCC 1 cut(s) 701
PspPI GGNCC 2 cut(s) 433, 472
RsaI GTAC 4 cut(s) 71, 329, 488, 509
RsaNI GTAC 4 cut(s) 70, 328, 487, 508
SalI GTCGAC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 2 cut(s) 433, 472
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 551
SduI GDGCHC 1 cut(s) 8
Sfr274I CTCGAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 3 cut(s) 200, 317, 590
SspMI CTAG 2 cut(s) 356, 750
StyD4I CCNGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 507
TaiI ACGT 4 cut(s) 25, 96, 333, 485
TaqI TCGA 6 cut(s) 198, 212, 429, 514, 679, 730
TasI AATT 3 cut(s) 200, 317, 590
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 4 cut(s) 97, 108, 526, 539
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TspDTI ATGAA 4 cut(s) 516, 535, 552, 603
TspGWI ACGGA 2 cut(s) 325, 479
Van91I CCANNNNNTGG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 433
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 730
XspI CTAG 2 cut(s) 356, 750
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.