Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287559.1

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

344 .. 835

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287559.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggacaagttacagatgaagctggctaggtttctgcgcagccctgtgggtattcccgaagataagcacccgtttattattgtacatatattggatatgattgaattagccgacccagataaaattatcgatgtgcacttgatggacatgactgttagagctacgggggaattcgcgcacttaaacgtggaagacaactactacaggctcatgcttattccggcatccgaagcattcattcaaggtttgcagcaagtgagactcgttgagcatgacagtttggaaatgcttggtctggagacatcgtgcgctgtttgtctggatgcctttgcggacacaaaagagatcaccatcgctcgcttgccctgcttacattattatcatcatcattgcattgtcgagtggctcaggatcaatcacgtctgccccatttgccggcaccctaatgccccgattagatgcccggggtcatcaaggcagggaagccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

163

Amino Acids

18.66

Weight (kDa)

5.96

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	438
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	104, 242
AjiI	CACGTC	1 cut(s)	421
AluBI	AGCT	2 cut(s)	22, 161
AluI	AGCT	2 cut(s)	22, 161
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	253, 293
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	463
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	39, 250
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	39, 178, 311
AsuC2I	CCSGG	2 cut(s)	464, 465
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	51, 262
BccI	CCATC	2 cut(s)	136, 359
BcnI	CCSGG	2 cut(s)	464, 465
BcoDI	GTCTC	2 cut(s)	253, 293
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	2 cut(s)	40, 251
BlsI	GCNGC	2 cut(s)	41, 252
Bme1390I	CCNGG	2 cut(s)	464, 465
BmeT110I	CYCGRG	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	464, 465
BmsI	GCATC	3 cut(s)	233, 313, 449
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	464, 465
Bsa29I	ATCGAT	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	463, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	463, 464
BseGI	GGATG	2 cut(s)	224, 328
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	51, 262
Bsh1236I	CGCG	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	438
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	221, 436, 464
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	253, 293
BsmI	GAATGC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	345, 411
BspACI	CCGC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	420
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	463, 464
BssMI	GATC	2 cut(s)	345, 411
Bst4CI	ACNGT	2 cut(s)	154, 278
BstAUI	TGTACA	1 cut(s)	82
BstC8I	GCNNGC	4 cut(s)	24, 358, 362, 437
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	224, 328
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	3 cut(s)	39, 178, 311
BstKTI	GATC	2 cut(s)	348, 414
BstMAI	GTCTC	2 cut(s)	253, 293
BstMBI	GATC	2 cut(s)	345, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 366, 432
BstSCI	CCNGG	2 cut(s)	462, 463
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	138
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	51, 262
BstV2I	GAAGAC	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	224, 328
Cac8I	GCNNGC	4 cut(s)	24, 358, 362, 437
CfoI	GCGC	3 cut(s)	39, 178, 311
Cfr10I	RCCGGY	1 cut(s)	435
Cfr9I	CCCGGG	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	3 cut(s)	148, 211, 272
CviJI	RGCY	8 cut(s)	22, 26, 42, 110, 161, 208, 406, 486
CviKI_1	RGCY	8 cut(s)	22, 26, 42, 110, 161, 208, 406, 486
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	2 cut(s)	347, 413
DpnII	GATC	2 cut(s)	345, 411
Eco88I	CYCGRG	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	170
FaeI	CATG	3 cut(s)	151, 214, 275
FaiI	YATR	6 cut(s)	87, 89, 98, 149, 212, 273
FatI	CATG	3 cut(s)	147, 210, 271
Fnu4HI	GCNGC	2 cut(s)	40, 251
FokI	GGATG	2 cut(s)	211, 335
Fsp4HI	GCNGC	2 cut(s)	40, 251
FspBI	CTAG	1 cut(s)	27
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	3 cut(s)	38, 177, 310
GluI	GCNGC	2 cut(s)	40, 251
GsuI	CTGGAG	1 cut(s)	317
HapII	CCGG	3 cut(s)	221, 436, 464
HhaI	GCGC	3 cut(s)	39, 178, 311
Hin1II	CATG	3 cut(s)	151, 214, 275
Hin6I	GCGC	3 cut(s)	37, 176, 309
HinP1I	GCGC	3 cut(s)	37, 176, 309
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	3 cut(s)	221, 436, 464
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	4 cut(s)	56, 296, 320, 409
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	154, 278
HpyCH4IV	ACGT	2 cut(s)	186, 420
HpyCH4V	TGCA	3 cut(s)	136, 250, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 366, 432
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	2 cut(s)	186, 420
Hsp92II	CATG	3 cut(s)	151, 214, 275
HspAI	GCGC	3 cut(s)	37, 176, 309
KroI	GCCGGC	1 cut(s)	435
KroNI	GCCGGC	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	345, 411
Lsp1109I	GCAGC	2 cut(s)	51, 262
LweI	GCATC	3 cut(s)	233, 313, 449
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	186, 420
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	2 cut(s)	347, 413
MboI	GATC	2 cut(s)	345, 411
MboII	GAAGA	2 cut(s)	71, 203
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	104, 123, 170
MlyI	GAGTC	1 cut(s)	255
MroNI	GCCGGC	1 cut(s)	435
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	3 cut(s)	221, 436, 464
MspR9I	CCNGG	2 cut(s)	464, 465
Mva1269I	GAATGC	1 cut(s)	233
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	230, 366, 432
NaeI	GCCGGC	1 cut(s)	437
NciI	CCSGG	2 cut(s)	464, 465
NdeII	GATC	2 cut(s)	345, 411
NgoMIV	GCCGGC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	151, 214, 275
NlaIV	GGNNCC	1 cut(s)	440
NsbI	TGCGCA	1 cut(s)	38
PctI	GAATGC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	41, 252
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	440
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	40, 251
Sau3AI	GATC	2 cut(s)	345, 411
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	464, 465
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	6 cut(s)	24, 32, 163, 189, 247, 423
SfaNI	GCATC	3 cut(s)	233, 313, 449
SfcI	CTRYAG	1 cut(s)	202
SmaI	CCCGGG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	3 cut(s)	104, 123, 170
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	462, 463
TaaI	ACNGT	2 cut(s)	154, 278
TaiI	ACGT	2 cut(s)	189, 423
TaqI	TCGA	2 cut(s)	129, 399
TasI	AATT	3 cut(s)	104, 123, 170
TatI	WGTACW	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	2 cut(s)	39, 250
TspDTI	ATGAA	2 cut(s)	32, 226
TspMI	CCCGGG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	463
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.