Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

4694865 .. 4697045

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACCACCATATTTGAGAGACGTGAATTTACCACCGCCGTTTTTCAAAGATATGAAAACAGAACCTACCGAAGCAAATCCTGCGTGGACGTACTCCCGATCAAGTTCTACCGGCGGAAGACATATGCAGACCATAACCCAGATATCCAAGATTTTGACGCTGAAACACCAACTTTGTTATCTACAAAAGTCCTCAAGTTTCGGTTCTCGAGGGAGAGGGCAAGTGGAAATGCAAAGACAACGATGGAGAGACTTGCTAGGTATCAAAGGATCATAGCTGGGTCTCCCAGGGAAGCAAACAAGTTACAGAACAAGTTGGGTACGTACCTTACCACTACTCTGGGAATTCACGAAGATGAGCAACCGTTTATTATTGTAAAAATATTGGAAATGCTCCGAAAAGCCGTCCCCGATAAAATTATAGAAGTGCACATGCTGGAAATGACATTTAGAAGTACGAATTGGTCCTTTCTGTGGGGCTTCAACGAGGACGGGGACGATATATACTACAGGGCTAAGCTAGTTCCTGCTCCGAAGTCATTCATCGAGTCTCTCGAGGAAGTGAGACTAATTGATGATGATAATCTGGAATTGCTTGGATTGGAGTGTCCTATTTCCTTTCTTATTGCTTCTAAGAAGAATGAATCGTCTGTTTGGCACAATGAATCGACAGCCCTGGAACATCCAGACTCTGGCAGTTTAATAGAAAGAGCAACCAAAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

243

Amino Acids

28.22

Weight (kDa)

7.75

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	2 cut(s)	36, 115
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	26, 345
AfaI	GTAC	4 cut(s)	93, 322, 326, 457
AfiI	CCNNNNNNNGG	3 cut(s)	474, 692, 723
AgsI	TTSAA	2 cut(s)	47, 484
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	287, 675
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	2 cut(s)	278, 520
AluI	AGCT	2 cut(s)	278, 520
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	5 cut(s)	13, 244, 288, 555, 559
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	2 cut(s)	208, 554
ApaLI	GTGCAC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	26, 345
Asp700I	GAANNNNTTC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	465
AvaI	CYCGRG	2 cut(s)	208, 554
AvaII	GGWCC	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	2 cut(s)	23, 389
BciT130I	CCWGG	2 cut(s)	289, 677
BcoDI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BfaI	CTAG	2 cut(s)	258, 521
BfmI	CTRYAG	1 cut(s)	508
BlpI	GCTNAGC	1 cut(s)	516
Bme1390I	CCNGG	2 cut(s)	289, 677
Bme18I	GGWCC	1 cut(s)	465
BmeT110I	CYCGRG	2 cut(s)	208, 554
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	289, 677
BpiI	GAAGAC	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	287, 288, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 692, 723
Bse118I	RCCGGY	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	289, 677
BseDI	CCNNGG	3 cut(s)	287, 288, 675
BseGI	GGATG	1 cut(s)	682
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	474, 692, 723
BseSI	GKGCMC	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	2 cut(s)	208, 554
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	392, 509
BslI	CCNNNNNNNGG	3 cut(s)	474, 692, 723
BsmAI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	392, 509
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	2 cut(s)	208, 554
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	99, 270
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	36, 115
BspPI	GGATC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	3 cut(s)	287, 288, 675
BssMI	GATC	2 cut(s)	99, 270
Bst2UI	CCWGG	2 cut(s)	289, 677
Bst4CI	ACNGT	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	516, 633
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	2 cut(s)	102, 273
BstMAI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BstMBI	GATC	2 cut(s)	99, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	2 cut(s)	289, 677
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	287, 675
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	432
BstSNI	TACGTA	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	682
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	465
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	4 cut(s)	92, 321, 325, 456
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	6 cut(s)	278, 404, 480, 515, 520, 674
CviKI_1	RGCY	6 cut(s)	278, 404, 480, 515, 520, 674
CviQI	GTAC	4 cut(s)	92, 321, 325, 456
DdeI	CTNAG	2 cut(s)	516, 633
DpnI	GATC	2 cut(s)	101, 272
DpnII	GATC	2 cut(s)	99, 270
EciI	GGCGGA	1 cut(s)	130
Eco105I	TACGTA	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	465
Eco88I	CYCGRG	2 cut(s)	208, 554
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	287, 675
EcoRV	GATATC	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	1 cut(s)	436
FaqI	GGGAC	2 cut(s)	392, 509
FatI	CATG	1 cut(s)	432
FauNDI	CATATG	1 cut(s)	124
FokI	GGATG	1 cut(s)	669
FspBI	CTAG	2 cut(s)	258, 521
GsaI	CCCAGC	1 cut(s)	282
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	436
HinfI	GANTC	4 cut(s)	548, 644, 665, 689
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	88, 430
Hpy188I	TCNGA	2 cut(s)	398, 534
Hpy188III	TCNNGA	6 cut(s)	97, 208, 350, 554, 587, 686
Hpy8I	GTNNAC	2 cut(s)	88, 430
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	3 cut(s)	22, 90, 323
HpyCH4V	TGCA	3 cut(s)	128, 233, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	2 cut(s)	516, 633
HpySE526I	ACGT	3 cut(s)	22, 90, 323
Hsp92II	CATG	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	99, 270
LmnI	GCTCC	2 cut(s)	399, 535
MaeI	CTAG	2 cut(s)	258, 521
MaeII	ACGT	3 cut(s)	22, 90, 323
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	2 cut(s)	101, 272
MboI	GATC	2 cut(s)	99, 270
MboII	GAAGA	3 cut(s)	130, 365, 649
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	6 cut(s)	26, 345, 417, 460, 570, 590
MlyI	GAGTC	2 cut(s)	557, 683
MnlI	CCTC	6 cut(s)	203, 204, 210, 481, 550, 717
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	1 cut(s)	701
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	289, 677
MvaI	CCWGG	2 cut(s)	289, 677
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	2 cut(s)	99, 270
NlaIII	CATG	1 cut(s)	436
NspI	RCATGY	1 cut(s)	436
PaeR7I	CTCGAG	2 cut(s)	208, 554
PasI	CCCWGGG	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	644, 665
PflMI	CCANNNNNTGG	1 cut(s)	692
PleI	GAGTC	2 cut(s)	556, 683
PpsI	GAGTC	2 cut(s)	556, 683
Ppu21I	YACGTR	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	287, 675
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	287, 675
PspPI	GGNCC	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	692
RsaI	GTAC	4 cut(s)	93, 322, 326, 457
RsaNI	GTAC	4 cut(s)	92, 321, 325, 456
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	701
Sau3AI	GATC	2 cut(s)	99, 270
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	2 cut(s)	557, 683
ScrFI	CCNGG	2 cut(s)	289, 677
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	9 cut(s)	25, 68, 93, 263, 280, 326, 330, 522, 728
SfcI	CTRYAG	1 cut(s)	508
Sfr274I	CTCGAG	2 cut(s)	208, 554
SinI	GGWCC	1 cut(s)	465
SlaI	CTCGAG	2 cut(s)	208, 554
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	3 cut(s)	194, 208, 554
SmoI	CTYRAG	3 cut(s)	194, 208, 554
SnaBI	TACGTA	1 cut(s)	324
Sse9I	AATT	6 cut(s)	26, 345, 417, 460, 570, 590
SsiI	CCGC	2 cut(s)	36, 115
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	258, 521
StyD4I	CCNGG	2 cut(s)	287, 675
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	3 cut(s)	25, 93, 326
TaqI	TCGA	4 cut(s)	209, 546, 555, 668
TasI	AATT	6 cut(s)	26, 345, 417, 460, 570, 590
TfiI	GAWTC	2 cut(s)	644, 665
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TspDTI	ATGAA	4 cut(s)	69, 532, 657, 678
Van91I	CCANNNNNTGG	1 cut(s)	692
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	2 cut(s)	26, 345
XceI	RCATGY	1 cut(s)	436
XhoI	CTCGAG	2 cut(s)	208, 554
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	2 cut(s)	258, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.