FvH4_6g05110

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000672
Physical Location & Seq
Reverse (-)
2852820 .. 2855795
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05110.t2

Sequence Viewer

Length: 726 bp
ATGAGCACGATTGAGACCAAAGAAGAATTTAGCACCCGAATTTATCAAACCGGTATAATCAGTGGCTACAAAAGCAGAGCCTCCGTGGACATAATTCCGATCAGATTCGTCCTGCTCAAGTCATATGCAGACTATAATCCAGAAATCCGCGAGTATGTGGTGGAAGCAGGAATACCAATTTTGGTACGCAGGAAAACTCTCAAGCTGCGGTTCTCGAGGGAGTGGGCGAGTGGCGATGAGAAGACAACGATGAAGAGATTTGCAAGGTATAAAAGGGTCATAGCTCGGTCTCCCAGGGAAGCCAACAAGTTACGGAACAAGTTGGGCAGATATCTCTACACATCTATGGGTCTTGACGAAGATAAGCATCTTCCTATTGTTGAACAAATTATGGAAATGCTTCCATCAGCCGTGCCGGATAAAGGTATCAAGGTCCAAATCATCCATGGTATATATAGAGATACGGAGGAGACGTTGCACTTGCACCAGGAGGATTTATACTGCAGGGCAAAGCTGATTCCGGCAGCTGAATCATTCATCCAGGCTTTGGAGGAAGTGAGGAGTCCGCCGCTTGAATTGGAGTGTCCTATCTGTATGGAAATGTTTGCACAGAAAAAAGGTACCAGCATTACCAAGTTGCCCTGCTCACATTATTATCATCGAGATTGCATTGTCCCGTGGCTCCAGATCAATCATCTCTGTCCCACTTGCCGCCACCCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

242

Amino Acids

28.04

Weight (kDa)

8.99

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 194 - 238 2.3e-12 Ring finger domain
zf-RING_11 PF17123 194 - 224 1.6e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 194 - 237 7.7e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 195 - 237 2.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 195 - 238 9.4e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 1 cut(s) 620
AccB7I CCANNNNNTGG 1 cut(s) 547
AccII CGCG 1 cut(s) 150
AciI CCGC 5 cut(s) 148, 208, 566, 569, 712
AcsI RAATTY 2 cut(s) 26, 39
AfaI GTAC 2 cut(s) 186, 622
AfiI CCNNNNNNNGG 2 cut(s) 422, 547
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 383, 575
AjnI CCWGG 3 cut(s) 293, 486, 540
AluBI AGCT 4 cut(s) 205, 284, 514, 527
AluI AGCT 4 cut(s) 205, 284, 514, 527
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 8, 294, 464
Ama87I CYCGRG 2 cut(s) 214, 718
ApeKI GCWGC 2 cut(s) 205, 524
ApoI RAATTY 2 cut(s) 26, 39
AsiGI ACCGGT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 620
AspS9I GGNCC 1 cut(s) 433
AvaI CYCGRG 2 cut(s) 214, 718
AvaII GGWCC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 620
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 192, 536
BccI CCATC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 3 cut(s) 295, 488, 542
BcoDI GTCTC 3 cut(s) 8, 294, 464
BfmI CTRYAG 1 cut(s) 502
BisI GCNGC 4 cut(s) 206, 525, 569, 712
BlsI GCNGC 4 cut(s) 207, 526, 570, 713
Bme1390I CCNGG 3 cut(s) 295, 488, 542
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 2 cut(s) 214, 718
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 2 cut(s) 622, 683
BmrFI CCNGG 3 cut(s) 295, 488, 542
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 668
BpuEI CTTGAG 2 cut(s) 101, 185
BsaBI GATNNNNATC 1 cut(s) 366
BsaI GGTCTC 2 cut(s) 8, 294
BsaJI CCNNGG 5 cut(s) 84, 293, 294, 445, 677
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 547
Bse118I RCCGGY 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 3 cut(s) 295, 488, 542
BseDI CCNNGG 5 cut(s) 84, 293, 294, 445, 677
BseGI GGATG 2 cut(s) 441, 537
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 422, 547
BseRI GAGGAG 2 cut(s) 482, 574
BseXI GCAGC 2 cut(s) 192, 536
Bsh1236I CGCG 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 620
BshTI ACCGGT 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 2 cut(s) 214, 718
BsiSI CCGG 3 cut(s) 51, 416, 521
BslFI GGGAC 2 cut(s) 659, 687
BslI CCNNNNNNNGG 2 cut(s) 422, 547
BsmAI GTCTC 3 cut(s) 8, 294, 464
BsmBI CGTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 659, 687
Bso31I GGTCTC 2 cut(s) 8, 294
BsoBI CYCGRG 2 cut(s) 214, 718
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 99, 687
Bsp19I CCATGG 1 cut(s) 445
BspACI CCGC 5 cut(s) 148, 208, 566, 569, 712
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 622, 683
BspMAI CTGCAG 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 620
BspTNI GGTCTC 2 cut(s) 8, 294
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 5 cut(s) 84, 293, 294, 445, 677
BssMI GATC 2 cut(s) 99, 687
BssT1I CCWWGG 1 cut(s) 445
Bst2UI CCWGG 3 cut(s) 295, 488, 542
Bst6I CTCTTC 1 cut(s) 248
BstDSI CCRYGG 3 cut(s) 84, 445, 677
BstF5I GGATG 2 cut(s) 441, 537
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 2 cut(s) 102, 690
BstMAI GTCTC 3 cut(s) 8, 294, 464
BstMBI GATC 2 cut(s) 99, 687
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 3 cut(s) 295, 488, 542
BstSCI CCNGG 3 cut(s) 293, 486, 540
BstSFI CTRYAG 1 cut(s) 502
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 192, 536
BstV2I GAAGAC 1 cut(s) 248
BtgI CCRYGG 3 cut(s) 84, 445, 677
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 441, 537
BtsIMutI CAGTG 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 185, 621
CspAI ACCGGT 1 cut(s) 50
CspCI CAANNNNNGTGG 1 cut(s) 704
CviAII CATG 1 cut(s) 446
CviQI GTAC 2 cut(s) 185, 621
DpnI GATC 2 cut(s) 101, 689
DpnII GATC 2 cut(s) 99, 687
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 445
Eco31I GGTCTC 2 cut(s) 8, 294
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 433
Eco88I CYCGRG 2 cut(s) 214, 718
EcoRII CCWGG 3 cut(s) 293, 486, 540
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 1 cut(s) 449
FaqI GGGAC 2 cut(s) 659, 687
FatI CATG 1 cut(s) 445
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 206, 525, 569, 712
FokI GGATG 2 cut(s) 428, 524
Fsp4HI GCNGC 4 cut(s) 206, 525, 569, 712
GluI GCNGC 4 cut(s) 206, 525, 569, 712
GsuI CTGGAG 1 cut(s) 668
HapII CCGG 3 cut(s) 51, 416, 521
Hin1II CATG 1 cut(s) 449
HinfI GANTC 4 cut(s) 105, 517, 530, 562
HpaII CCGG 3 cut(s) 51, 416, 521
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 99, 104
Hpy188III TCNNGA 5 cut(s) 140, 214, 353, 662, 685
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 7 cut(s) 128, 263, 478, 484, 504, 608, 669
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 1 cut(s) 449
KpnI GGTACC 1 cut(s) 624
Kzo9I GATC 2 cut(s) 99, 687
LmnI GCTCC 1 cut(s) 687
Lsp1109I GCAGC 2 cut(s) 192, 536
LweI GCATC 1 cut(s) 376
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 309
MalI GATC 2 cut(s) 101, 689
MboI GATC 2 cut(s) 99, 687
MboII GAAGA 5 cut(s) 35, 253, 265, 362, 371
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 26, 39, 93, 177, 387, 575
MlyI GAGTC 1 cut(s) 571
MnlI CCTC 6 cut(s) 91, 210, 460, 484, 544, 552
MroXI GAANNNNTTC 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 3 cut(s) 51, 416, 521
MspR9I CCNGG 3 cut(s) 295, 488, 542
MvaI CCWGG 3 cut(s) 295, 488, 542
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 72
NcoI CCATGG 1 cut(s) 445
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 99, 687
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 2 cut(s) 622, 683
PaeR7I CTCGAG 1 cut(s) 214
PasI CCCWGGG 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 3 cut(s) 105, 517, 530
PflMI CCANNNNNTGG 1 cut(s) 547
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 4 cut(s) 207, 526, 570, 713
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
Psp6I CCWGG 3 cut(s) 293, 486, 540
PspGI CCWGG 3 cut(s) 293, 486, 540
PspN4I GGNNCC 2 cut(s) 622, 683
PspPI GGNCC 1 cut(s) 433
PstI CTGCAG 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 186, 622
RsaNI GTAC 2 cut(s) 185, 621
RseI CAYNNNNRTG 1 cut(s) 344
SatI GCNGC 4 cut(s) 206, 525, 569, 712
Sau3AI GATC 2 cut(s) 99, 687
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 3 cut(s) 295, 488, 542
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 207, 269, 286, 427, 435, 476, 516, 529, 622
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 502
Sfr274I CTCGAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 3 cut(s) 116, 200, 214
SmoI CTYRAG 3 cut(s) 116, 200, 214
Sse9I AATT 6 cut(s) 26, 39, 93, 177, 387, 575
SsiI CCGC 5 cut(s) 148, 208, 566, 569, 712
StyD4I CCNGG 3 cut(s) 293, 486, 540
StyI CCWWGG 1 cut(s) 445
TaiI ACGT 1 cut(s) 476
TaqI TCGA 2 cut(s) 215, 661
TaqII GACCGA 1 cut(s) 276
TasI AATT 6 cut(s) 26, 39, 93, 177, 387, 575
TauI GCSGC 2 cut(s) 571, 714
TfiI GAWTC 3 cut(s) 105, 517, 530
TscAI CASTG 1 cut(s) 67
TseI GCWGC 2 cut(s) 205, 524
TspDTI ATGAA 2 cut(s) 266, 526
TspGWI ACGGA 3 cut(s) 73, 328, 479
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 2 cut(s) 26, 39
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XhoI CTCGAG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.