Rh6BG291400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000672
Physical Location & Seq
Forward (+)
51680082 .. 51688926
8845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG291400.1

Sequence Viewer

Length: 279 bp
ATGTTGACAACCGGGAGGAAGTCGACAACCTTCGACGACTCTCGGAAAGGTGATCAGAACACGTGGTTTTCTAATAAAGAAGCCAAGCTGCTGAAATTGCAGAAAGTCACCTCTGAATTTGGAACTTTGTTAAGCAATATCAGTATATCAAAGATACAAAACGAATTGCTTCTAAAACGTCATGGTTCTCTTGCGAATCTGGTCTGGGAATGTCCTTCTGTGATTTTGATCATTGATTTATTTGTATTATCCTCCCAACACTGTGGCACTCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.31

Weight (kDa)

9.1

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 116
AcvI CACGTG 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 60
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 62, 100
BbrPI CACGTG 1 cut(s) 63
BbvI GCAGC 1 cut(s) 75
BclI TGATCA 2 cut(s) 52, 228
BcnI CCSGG 1 cut(s) 13
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 13
BsaAI YACGTR 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 227
BseJI GATNNNNATC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 12
Bsp143I GATC 2 cut(s) 52, 228
BssMI GATC 2 cut(s) 52, 228
Bst4CI ACNGT 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 63
BstKTI GATC 2 cut(s) 55, 231
BstMBI GATC 2 cut(s) 52, 228
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 259
CviAII CATG 1 cut(s) 182
CviJI RGCY 2 cut(s) 83, 88
CviKI_1 RGCY 2 cut(s) 83, 88
DpnI GATC 2 cut(s) 54, 230
DpnII GATC 2 cut(s) 52, 228
Eco72I CACGTG 1 cut(s) 63
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 146, 183
FatI CATG 1 cut(s) 181
FbaI TGATCA 2 cut(s) 52, 228
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HapII CCGG 1 cut(s) 12
Hin1II CATG 1 cut(s) 185
HincII GTYRAC 2 cut(s) 6, 24
HindII GTYRAC 2 cut(s) 6, 24
HinfI GANTC 2 cut(s) 38, 196
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 62, 100
Hpy166II GTNNAC 2 cut(s) 6, 24
Hpy188I TCNGA 3 cut(s) 45, 57, 115
Hpy8I GTNNAC 2 cut(s) 6, 24
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 40, 225
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 2 cut(s) 62, 178
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpySE526I ACGT 2 cut(s) 62, 178
Hsp92II CATG 1 cut(s) 185
Ksp22I TGATCA 2 cut(s) 52, 228
Kzo9I GATC 2 cut(s) 52, 228
LpnPI CCDG 3 cut(s) 25, 185, 190
Lsp1109I GCAGC 1 cut(s) 75
MaeII ACGT 2 cut(s) 62, 178
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 54, 230
MboI GATC 2 cut(s) 52, 228
MluCI AATT 3 cut(s) 95, 116, 164
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 9, 121, 262
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 131
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 13
NdeII GATC 2 cut(s) 52, 228
NlaIII CATG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 32
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
PpsI GAGTC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 63
PspCI CACGTG 1 cut(s) 63
SalI GTCGAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 52, 228
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 13
SetI ASST 6 cut(s) 32, 52, 65, 90, 113, 181
Sse9I AATT 3 cut(s) 95, 116, 164
StyD4I CCNGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 2 cut(s) 65, 181
TaqI TCGA 2 cut(s) 23, 33
TasI AATT 3 cut(s) 95, 116, 164
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 1 cut(s) 266
XapI RAATTY 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.