Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

63780176 .. 63781130

Gene Structure 955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACCACCACCGTCACCGGAAGCCGTGAATCTCCGCATGAGAGACGCAATATTTCCACCGTAGTTTACCAAGACCATATAAACCAATCCTTCACAAGCAGCGCCGGCGTGGACGTACTTCCGATCAGATTCCGGCTCTTTAAGGTAACTGCTAACTATAATCCGATTCTCCACGATTATGATCTCGAAACTCCAATTCCCATATCTACACATGTATATTTGCTGCGGTTCTCGGCGGAGCGGCGGAGCTGGAATTCAAAGATAACGATGGAGAGGTTGGCTAGGTATCATAGGACGATTGCTAAGTGTGGTTGGCAGATGGATAAGTTGGTAGACAAGCTGGCAAGGTATCTTTCTGATACTGTGGGTGTTGAAGAGGATCAACACCCTTGTATTATTCTGAAAACGGTGGAGATGATTCAAGCCGCCGTCCACGACCGGGTTATCGATGTGCAGATATCGGACATCACATTTATCGAACCGGAACCTGAACCGGAGGAGGAACCTGAGCTGGAGGAGGAGTCTGAACCGGAGGAGGAGTCGGAACAAGAGGAGGAGTCTGAAACGGAGGAGGATTCTGAACAGGAGGGATTCGAGGATTTGGACGACACATCGTACGGGGACAATCTGACTCCTGCATCTGAATCATTCATGGAGGATTTGAAGAAATTGAGAGTACTTGGTTCGGAATTGGAAATGCTTGGGCAGACGCCAAACTGTGCTATTTGTCTTGGGGTGCTTGCTGAAGAAGGATATGATGATCAACTGATCACCATTACTCGTTTGCCTTGCTTACACTATTATCATCGGGATTGCATTATTAAGTGGATGATGATCAATAATTTATGCCCAGTTTGTCGACGCCAGAATGTGGAAGCAGGGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

296

Amino Acids

34.13

Weight (kDa)

4.5

Isoelectric Point (pI)

63.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	239 - 287	8.9e-11	Ring finger domain
zf-C3HC4	PF00097	240 - 286	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	240 - 286	7.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	240 - 287	4.7e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	333, 859
AciI	CCGC	6 cut(s)	35, 226, 236, 241, 244, 426
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	2 cut(s)	710, 862
AfaI	GTAC	3 cut(s)	117, 617, 678
AfiI	CCNNNNNNNGG	2 cut(s)	439, 871
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	258, 374, 422, 664
AluBI	AGCT	3 cut(s)	249, 340, 511
AluI	AGCT	3 cut(s)	249, 340, 511
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	99, 223
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	7, 763
BbvI	GCAGC	2 cut(s)	111, 210
BccI	CCATC	2 cut(s)	262, 313
BceAI	ACGGC	2 cut(s)	9, 413
BclI	TGATCA	3 cut(s)	760, 768, 834
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	4 cut(s)	100, 224, 242, 426
BlsI	GCNGC	4 cut(s)	101, 225, 243, 427
BmcAI	AGTACT	1 cut(s)	678
Bme1390I	CCNGG	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	486, 504
BmrFI	CCNGG	1 cut(s)	440
BmrI	ACTGGG	1 cut(s)	845
BmsI	GCATC	1 cut(s)	647
BmuI	ACTGGG	1 cut(s)	845
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	447
BsaBI	GATNNNNATC	2 cut(s)	180, 833
BsaHI	GRCGYC	2 cut(s)	710, 862
BsaWI	WCCGGW	4 cut(s)	17, 481, 493, 529
BsaXI	ACNNNNNCTCC	4 cut(s)	506, 524, 536, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 871
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	851
Bse8I	GATNNNNATC	2 cut(s)	180, 833
BseCI	ATCGAT	1 cut(s)	447
BseGI	GGATG	1 cut(s)	834
BseJI	GATNNNNATC	2 cut(s)	180, 833
BseLI	CCNNNNNNNGG	2 cut(s)	439, 871
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	8 cut(s)	512, 530, 533, 548, 551, 566, 569, 584
BseXI	GCAGC	2 cut(s)	111, 210
BsgI	GTGCAG	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
BsiWI	CGTACG	1 cut(s)	615
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	2 cut(s)	439, 871
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	635
Bsp143I	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
BspACI	CCGC	6 cut(s)	35, 226, 236, 241, 244, 426
BspCNI	CTCAG	1 cut(s)	499
BspDI	ATCGAT	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	486, 504
BspPI	GGATC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	851
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
BssNI	GRCGYC	2 cut(s)	710, 862
Bst4CI	ACNGT	5 cut(s)	13, 61, 364, 409, 719
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	2 cut(s)	710, 862
BstC8I	GCNNGC	3 cut(s)	106, 342, 741
BstDEI	CTNAG	2 cut(s)	303, 507
BstF5I	GGATG	1 cut(s)	834
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	6 cut(s)	126, 184, 382, 763, 771, 837
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	111, 210
Bsu15I	ATCGAT	1 cut(s)	447
BsuTUI	ATCGAT	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	834
Cac8I	GCNNGC	3 cut(s)	106, 342, 741
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	447
CseI	GACGC	3 cut(s)	54, 718, 870
Csp6I	GTAC	3 cut(s)	116, 616, 677
CviAII	CATG	3 cut(s)	38, 212, 652
CviJI	RGCY	7 cut(s)	24, 136, 249, 281, 340, 425, 511
CviKI_1	RGCY	7 cut(s)	24, 136, 249, 281, 340, 425, 511
CviQI	GTAC	3 cut(s)	116, 616, 677
DdeI	CTNAG	2 cut(s)	303, 507
DpnI	GATC	6 cut(s)	125, 183, 381, 762, 770, 836
DpnII	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	2 cut(s)	251, 259
Eco32I	GATATC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	765
EcoRI	GAATTC	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	3 cut(s)	41, 215, 655
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	3 cut(s)	37, 211, 651
FbaI	TGATCA	3 cut(s)	760, 768, 834
FblI	GTMKAC	2 cut(s)	333, 859
Fnu4HI	GCNGC	4 cut(s)	100, 224, 242, 426
FokI	GGATG	1 cut(s)	841
Fsp4HI	GCNGC	4 cut(s)	100, 224, 242, 426
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	100, 224, 242, 426
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
HgaI	GACGC	3 cut(s)	54, 718, 870
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	2 cut(s)	710, 862
Hin1II	CATG	3 cut(s)	41, 215, 655
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HpaII	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
HphI	GGTGA	2 cut(s)	7, 763
Hpy166II	GTNNAC	5 cut(s)	67, 112, 334, 433, 860
Hpy188III	TCNNGA	2 cut(s)	185, 809
Hpy8I	GTNNAC	5 cut(s)	67, 112, 334, 433, 860
Hpy99I	CGWCG	1 cut(s)	864
HpyAV	CCTTC	2 cut(s)	100, 743
HpyCH4III	ACNGT	5 cut(s)	13, 61, 364, 409, 719
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	454, 638, 816
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	303, 507
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	2 cut(s)	710, 862
Hsp92II	CATG	3 cut(s)	41, 215, 655
HspAI	GCGC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	3 cut(s)	760, 768, 834
Kzo9I	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
LmnI	GCTCC	2 cut(s)	238, 246
Lsp1109I	GCAGC	2 cut(s)	111, 210
LweI	GCATC	1 cut(s)	647
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	13, 145
MalI	GATC	6 cut(s)	125, 183, 381, 762, 770, 836
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
MboII	GAAGA	3 cut(s)	386, 676, 758
MluCI	AATT	5 cut(s)	195, 253, 668, 689, 841
MlyI	GAGTC	4 cut(s)	530, 548, 566, 625
MmeI	TCCRAC	1 cut(s)	522
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	2 cut(s)	141, 822
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
MspR9I	CCNGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	105
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	41, 215, 655
NlaIV	GGNNCC	2 cut(s)	486, 504
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	7 cut(s)	29, 129, 166, 418, 575, 591, 644
Pfl23II	CGTACG	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	4 cut(s)	101, 225, 243, 427
PleI	GAGTC	4 cut(s)	529, 547, 565, 625
PpsI	GAGTC	4 cut(s)	529, 547, 565, 625
PscI	ACATGT	1 cut(s)	211
PspLI	CGTACG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	486, 504
RsaI	GTAC	3 cut(s)	117, 617, 678
RsaNI	GTAC	3 cut(s)	116, 616, 677
RseI	CAYNNNNRTG	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	858
SaqAI	TTAA	2 cut(s)	141, 822
SatI	GCNGC	4 cut(s)	100, 224, 242, 426
Sau3AI	GATC	6 cut(s)	123, 181, 379, 760, 768, 834
ScaI	AGTACT	1 cut(s)	678
SchI	GAGTC	4 cut(s)	530, 548, 566, 625
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	647
SgrAI	CRCCGGYG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	195, 253, 668, 689, 841
SsiI	CCGC	6 cut(s)	35, 226, 236, 241, 244, 426
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	5 cut(s)	13, 61, 364, 409, 719
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	5 cut(s)	186, 447, 477, 594, 859
TasI	AATT	5 cut(s)	195, 253, 668, 689, 841
TatI	WGTACW	1 cut(s)	676
TauI	GCSGC	2 cut(s)	244, 428
TfiI	GAWTC	7 cut(s)	29, 129, 166, 418, 575, 591, 644
Tru1I	TTAA	2 cut(s)	141, 822
Tru9I	TTAA	2 cut(s)	141, 822
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	99, 223
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	640
TspGWI	ACGGA	1 cut(s)	581
Van91I	CCANNNNNTGG	1 cut(s)	871
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	333, 859
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.