FvH4_2g35820

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000672
Physical Location & Seq
Forward (+)
26373299 .. 26375862
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35820.t1

Sequence Viewer

Length: 366 bp
ATGCAGTCCCCAGCCCTGTTTGAGAGCCGTCATGTATTTAGCAGCAAAGTTTTTCAAATGCATAGAAACAGGACCTTCCGAAGCACCGTGGACATAATTCCGATCAGATTCCGCCGGTACGATGCATATGCAAACTACAATCCAGAAACCCATCGGTATGATGATGAATTTCCAATTCTGAAACGTATTAGAACTCTCAAGTTGAAGTTCTCGAGGGAGAAGGCGAGTGGCGATGCAAAGACAAGGATGGAGAGATTTGCAAGGTACAGGAGGATCATAGCTGGGTCTCCGAGGGAAGCGAACAAGTTACGGAACAAGCTAGGCAGCCTTTCTGATTGCTTCCAAGTGAGTGGTATCTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

122

Amino Acids

14.36

Weight (kDa)

10.75

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 112
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 2 cut(s) 119, 266
AgsI TTSAA 2 cut(s) 56, 205
AluBI AGCT 2 cut(s) 281, 319
AluI AGCT 2 cut(s) 281, 319
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 42, 324
ApoI RAATTY 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 54, 336
BccI CCATC 2 cut(s) 159, 241
BceAI ACGGC 1 cut(s) 12
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 320
BisI GCNGC 2 cut(s) 43, 325
BlsI GCNGC 2 cut(s) 44, 326
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 72
BmsI GCATC 2 cut(s) 112, 223
BpuEI CTTGAG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 87, 290
Bse118I RCCGGY 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 87, 290
BseGI GGATG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 54, 336
BseYI CCCAGC 2 cut(s) 10, 281
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 291
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 211
Bsp143I GATC 2 cut(s) 102, 273
BspACI CCGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 87, 290
BssMI GATC 2 cut(s) 102, 273
Bst4CI ACNGT 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 2 cut(s) 105, 276
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 2 cut(s) 102, 273
BstV1I GCAGC 2 cut(s) 54, 336
BstXI CCANNNNNNTGG 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 118, 265
CviAII CATG 1 cut(s) 32
CviJI RGCY 5 cut(s) 14, 27, 281, 319, 327
CviKI_1 RGCY 5 cut(s) 14, 27, 281, 319, 327
CviQI GTAC 2 cut(s) 118, 265
DpnI GATC 2 cut(s) 104, 275
DpnII GATC 2 cut(s) 102, 273
EciI GGCGGA 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 72
EcoT22I ATGCAT 2 cut(s) 63, 127
FaeI CATG 1 cut(s) 35
FaiI YATR 9 cut(s) 33, 63, 95, 127, 129, 159, 278, 362, 364
FatI CATG 1 cut(s) 31
FauNDI CATATG 2 cut(s) 127, 362
Fnu4HI GCNGC 2 cut(s) 43, 325
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 43, 325
FspBI CTAG 1 cut(s) 320
GluI GCNGC 2 cut(s) 43, 325
GsaI CCCAGC 2 cut(s) 14, 285
HapII CCGG 1 cut(s) 115
Hin1II CATG 1 cut(s) 35
HinfI GANTC 1 cut(s) 108
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 6 cut(s) 80, 102, 107, 180, 291, 334
Hpy188III TCNNGA 2 cut(s) 143, 211
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 85, 214
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 6 cut(s) 4, 61, 125, 131, 236, 260
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 1 cut(s) 35
Kzo9I GATC 2 cut(s) 102, 273
LpnPI CCDG 7 cut(s) 24, 29, 55, 128, 156, 253, 267
Lsp1109I GCAGC 2 cut(s) 54, 336
LweI GCATC 2 cut(s) 112, 223
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 306
MalI GATC 2 cut(s) 104, 275
MboI GATC 2 cut(s) 102, 273
MluCI AATT 3 cut(s) 96, 167, 174
MnlI CCTC 3 cut(s) 207, 264, 285
Mph1103I ATGCAT 2 cut(s) 63, 127
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 115
NdeI CATATG 2 cut(s) 127, 362
NdeII GATC 2 cut(s) 102, 273
NlaIII CATG 1 cut(s) 35
NsiI ATGCAT 2 cut(s) 63, 127
PaeR7I CTCGAG 1 cut(s) 211
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 2 cut(s) 44, 326
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
PspFI CCCAGC 2 cut(s) 10, 281
PspPI GGNCC 1 cut(s) 72
PspPPI RGGWCCY 1 cut(s) 72
RsaI GTAC 2 cut(s) 119, 266
RsaNI GTAC 2 cut(s) 118, 265
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 2 cut(s) 43, 325
Sau3AI GATC 2 cut(s) 102, 273
Sau96I GGNCC 1 cut(s) 72
SetI ASST 5 cut(s) 77, 187, 266, 283, 321
SfaNI GCATC 2 cut(s) 112, 223
Sfr274I CTCGAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 197, 211
SmoI CTYRAG 2 cut(s) 197, 211
Sse9I AATT 3 cut(s) 96, 167, 174
SsiI CCGC 1 cut(s) 112
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 212
TasI AATT 3 cut(s) 96, 167, 174
TfiI GAWTC 1 cut(s) 108
TseI GCWGC 2 cut(s) 42, 324
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 211
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 2 cut(s) 63, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.