Rh6DG458600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000672
Physical Location & Seq
Reverse (-)
62846129 .. 62851871
5743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG458600.1

Sequence Viewer

Length: 387 bp
ATGACCACCACCGTCACCGGAAGCCGTGAATCTCCGGATGAGAGACGCAATATTTCCACCGTAGTTTACCAAGACCATATAAACCGATCCTTCACAAGCAGCGCCGGCGTGGACGTACTTCCGATCAGATTCCGGCTCTTTAAGTGGTTCAATTCGATTGGGTGTTTCCTTCATCTGCACAATGAACGCCCTCCTCAAGATCCACTTGGAGAATACCAGAATCTGTTGTATGGAGAATACCAGAACCGGGCATTGAAGCACCATTCCAGGTTATTTGCGTATCACTTGGAGGCTAATCTGCTCTGTCCCCTATTCTCTATCATCTATCTTCCACTCGTCATAGAAAATTCAAGTACTGCATTACCTTCACTGTACCAATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.79

Weight (kDa)

7.01

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 34
AclWI GGATC 2 cut(s) 81, 194
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 3 cut(s) 117, 355, 374
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 3 cut(s) 151, 256, 351
AjnI CCWGG 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 81, 194
AlwNI CAGNNNCTG 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 346
AspLEI GCGC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 7
BbvI GCAGC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 37
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 248, 268
BmrFI CCNGG 2 cut(s) 248, 268
BpuEI CTTGAG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 17, 34
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 161
BsiSI CCGG 5 cut(s) 18, 35, 105, 133, 247
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 291
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 86, 123, 199
BspEI TCCGGA 1 cut(s) 34
BspPI GGATC 2 cut(s) 81, 194
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 3 cut(s) 86, 123, 199
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 3 cut(s) 13, 61, 372
BstC8I GCNNGC 1 cut(s) 106
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 89, 126, 202
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 86, 123, 199
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 246, 266
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 116, 354, 373
CviJI RGCY 3 cut(s) 24, 136, 293
CviKI_1 RGCY 3 cut(s) 24, 136, 293
CviQI GTAC 3 cut(s) 116, 354, 373
DpnI GATC 3 cut(s) 88, 125, 201
DpnII GATC 3 cut(s) 86, 123, 199
EcoRII CCWGG 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 37
FaiI YATR 4 cut(s) 78, 80, 231, 341
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 100
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 105
HapII CCGG 5 cut(s) 18, 35, 105, 133, 247
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 104
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 3 cut(s) 29, 129, 220
HpaII CCGG 5 cut(s) 18, 35, 105, 133, 247
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 67, 112
Hpy188I TCNGA 2 cut(s) 123, 128
Hpy188III TCNNGA 2 cut(s) 35, 197
Hpy8I GTNNAC 2 cut(s) 67, 112
HpyAV CCTTC 3 cut(s) 100, 179, 375
HpyCH4III ACNGT 3 cut(s) 13, 61, 372
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 178, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 114
HspAI GCGC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 34
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 86, 123, 199
LpnPI CCDG 9 cut(s) 31, 48, 118, 146, 230, 253, 254, 260, 280
Lsp1109I GCAGC 1 cut(s) 111
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 88, 125, 201
MboI GATC 3 cut(s) 86, 123, 199
MboII GAAGA 1 cut(s) 320
MflI RGATCY 1 cut(s) 199
MluCI AATT 2 cut(s) 151, 346
MnlI CCTC 3 cut(s) 201, 204, 283
MreI CGCCGGCG 1 cut(s) 104
MroI TCCGGA 1 cut(s) 34
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 1 cut(s) 141
MspI CCGG 5 cut(s) 18, 35, 105, 133, 247
MspR9I CCNGG 2 cut(s) 248, 268
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 105
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 248
NdeII GATC 3 cut(s) 86, 123, 199
NgoMIV GCCGGC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 3 cut(s) 29, 129, 220
PkrI GCNGC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 117, 355, 374
RsaNI GTAC 3 cut(s) 116, 354, 373
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 3 cut(s) 86, 123, 199
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 2 cut(s) 248, 268
SetI ASST 3 cut(s) 117, 272, 367
SgrAI CRCCGGYG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 2 cut(s) 151, 346
SspI AATATT 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 246, 266
TaaI ACNGT 3 cut(s) 13, 61, 372
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 155
TasI AATT 2 cut(s) 151, 346
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 3 cut(s) 29, 129, 220
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 161, 198
TspRI CASTG 1 cut(s) 375
XapI RAATTY 1 cut(s) 346
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.