FvH4_2g16160

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000672
Physical Location & Seq
Reverse (-)
14112968 .. 14116342
3375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16160.t5

Sequence Viewer

Length: 552 bp
ATGCTACTAGAATATGGAATCTTGATTCCATTTAATGATAGGTTTTCTGGTTTAAACACAACCCGCCGCCGCAGATCCGAAGCAAGCATGAGCACTCTGTTTGAGACCCATGATGAATACAGCACCCGTGTTTATCAAAAACACAGAAAGATAGCCTTCCGAAGCAGCGCCTCCGTGGACATAATTCCGATCAGGTTCCACTGGTTCAAGGCATATGCAAACTATAATCCAGAAATGCACGAGTATGAGCCAGTAGAACCGCAAATTTTGTTACGCAGGAGAACTCTCAAGTTGCGGTTCTCGAGGGAGAAGGCGAGTGGCGATGAAAAGACAAGGATGGAGAGATTTGCATGGTATAAAAGGGTCATAGCTGGATCTCCCAGGGAAGCCAACAAGTTGCGGAACAAGTTGGGCAGATATCTCCACACAGCTGTGGGTCTTGACGAAGATAAGCATTCTTCTATTATTGAAGAAATTATGGAATTGCTTCCAGCAGCCGTGCCCGATAAAGTTATGGAGGTTCAAATTGCGCATGTTATATATAGAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

184

Amino Acids

21.69

Weight (kDa)

9.72

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 531
AciI CCGC 6 cut(s) 64, 67, 70, 260, 295, 400
AclWI GGATC 2 cut(s) 69, 382
AcsI RAATTY 1 cut(s) 264
AgsI TTSAA 3 cut(s) 208, 470, 524
AjnI CCWGG 1 cut(s) 380
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 2 cut(s) 371, 431
AluI AGCT 2 cut(s) 371, 431
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 69, 382
Ama87I CYCGRG 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 165, 494
ApoI RAATTY 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 2 cut(s) 170, 532
AvaI CYCGRG 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 504
BauI CACGAG 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 177, 506
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 4 cut(s) 67, 70, 166, 495
BlsI GCNGC 4 cut(s) 68, 71, 167, 496
Bme1390I CCNGG 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 174, 380, 381
Bse1I ACTGG 2 cut(s) 206, 251
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 3 cut(s) 174, 380, 381
BseGI GGATG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 206, 251
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 2 cut(s) 177, 506
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 454
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 95, 504
Bsp143I GATC 3 cut(s) 74, 189, 374
BspACI CCGC 6 cut(s) 64, 67, 70, 260, 295, 400
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 69, 382
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 206, 251
BssECI CCNNGG 3 cut(s) 174, 380, 381
BssMI GATC 3 cut(s) 74, 189, 374
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 342
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 170, 532
BstKTI GATC 3 cut(s) 77, 192, 377
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 74, 189, 374
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 177, 506
BstX2I RGATCY 2 cut(s) 74, 374
BstYI RGATCY 2 cut(s) 74, 374
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 2 cut(s) 170, 532
CviAII CATG 4 cut(s) 88, 110, 351, 533
CviJI RGCY 6 cut(s) 155, 250, 371, 389, 431, 497
CviKI_1 RGCY 6 cut(s) 155, 250, 371, 389, 431, 497
DpnI GATC 3 cut(s) 76, 191, 376
DpnII GATC 3 cut(s) 74, 189, 374
DraI TTTAAA 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 98
Eco32I GATATC 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 419
FaeI CATG 4 cut(s) 91, 113, 354, 536
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 4 cut(s) 87, 109, 350, 532
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 67, 70, 166, 495
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 4 cut(s) 67, 70, 166, 495
FspBI CTAG 1 cut(s) 8
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 2 cut(s) 169, 531
GluI GCNGC 4 cut(s) 67, 70, 166, 495
HaeII RGCGCY 1 cut(s) 171
HhaI GCGC 2 cut(s) 170, 532
Hin1II CATG 4 cut(s) 91, 113, 354, 536
Hin6I GCGC 2 cut(s) 168, 530
HinP1I GCGC 2 cut(s) 168, 530
HinfI GANTC 2 cut(s) 18, 25
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 79, 161, 189
Hpy188III TCNNGA 4 cut(s) 22, 230, 301, 440
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 166, 304
HpyCH4V TGCA 3 cut(s) 218, 238, 350
Hsp92II CATG 4 cut(s) 91, 113, 354, 536
HspAI GCGC 2 cut(s) 168, 530
Kzo9I GATC 3 cut(s) 74, 189, 374
Lsp1109I GCAGC 2 cut(s) 177, 506
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 76, 191, 376
MboI GATC 3 cut(s) 74, 189, 374
MboII GAAGA 3 cut(s) 450, 458, 482
MflI RGATCY 2 cut(s) 74, 374
MhlI GDGCHC 2 cut(s) 95, 504
MluCI AATT 5 cut(s) 183, 264, 474, 482, 525
MnlI CCTC 3 cut(s) 181, 297, 511
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 2 cut(s) 33, 53
MslI CAYNNNNRTG 2 cut(s) 243, 431
MspA1I CMGCKG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 382
MssI GTTTAAAC 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 382
NdeI CATATG 1 cut(s) 214
NdeII GATC 3 cut(s) 74, 189, 374
NlaIII CATG 4 cut(s) 91, 113, 354, 536
NlaIV GGNNCC 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 531
NspI RCATGY 1 cut(s) 536
OliI CACNNNNGTG 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 301
PasI CCCWGGG 1 cut(s) 381
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 18, 25
PkrI GCNGC 4 cut(s) 68, 71, 167, 496
PmeI GTTTAAAC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 2 cut(s) 74, 374
PvuII CAGCTG 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 243, 431
SaqAI TTAA 2 cut(s) 33, 53
SatI GCNGC 4 cut(s) 67, 70, 166, 495
Sau3AI GATC 3 cut(s) 74, 189, 374
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 2 cut(s) 95, 504
SetI ASST 5 cut(s) 44, 197, 373, 433, 522
Sfr274I CTCGAG 1 cut(s) 301
SlaI CTCGAG 1 cut(s) 301
SmiMI CAYNNNNRTG 2 cut(s) 243, 431
SmlI CTYRAG 2 cut(s) 287, 301
SmoI CTYRAG 2 cut(s) 287, 301
Sse9I AATT 5 cut(s) 183, 264, 474, 482, 525
SsiI CCGC 6 cut(s) 64, 67, 70, 260, 295, 400
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 380
TaqI TCGA 1 cut(s) 302
TasI AATT 5 cut(s) 183, 264, 474, 482, 525
TauI GCSGC 2 cut(s) 69, 72
TfiI GAWTC 2 cut(s) 18, 25
Tru1I TTAA 2 cut(s) 33, 53
Tru9I TTAA 2 cut(s) 33, 53
TscAI CASTG 1 cut(s) 206
TseI GCWGC 2 cut(s) 165, 494
TspDTI ATGAA 2 cut(s) 129, 339
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 206
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 536
XhoI CTCGAG 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.