Rmu_sc0031367.1_g000001

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031367.1
OG0000672
Physical Location & Seq
Reverse (-)
6119 .. 6883
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031367.1_g000001.1.cds

Sequence Viewer

Length: 765 bp
atgagcagcatcaccgatgagaaccttgaatttgtggagacaggcatatttgataccatagcctatcaggaagtgacgaacagctgctacagtagcggcgctggcgtggacatactggcgatcagattctgcttcttcaaggtaattaaatactgtaatgggtttgaagaatttgagttggaaccaggtgttttattagctcgtcatgtacttaagttgcggatctcgagagagaggaggggttgtgattcaaataaaaggatggacaggttggctaggtacagagggatcatagctaggtctccaagggagaagagaaagtttaagaggaagatggctaggtatctttcaaggattggagctccggaagaagagcacgagtctattattgaaaaaatattggaggagcttaaagatgctgtccccgacttgatacttgatgtgcacattgcaaaattcataactagatacacggccgagcatttcttcgacgacacacactacagggccaagctaattcctgcaaccgaatcattcatccagggtttggagaaagtgacatcactagagagttttggcggacagacttgtgctatttgtatggaggcatttgctgcacatcatcatctgaatcggttgccctgcttgcactcttatcatcaacgttgcattgtccagtggctccaaatcaatcacgtctgccccatttgtagacacccttatgctactgcctctgccgagccatcagaccctaatcccaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

254

Amino Acids

29.26

Weight (kDa)

7.17

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 547
AccI GTMKAC 1 cut(s) 712
AccIII TCCGGA 1 cut(s) 364
AciI CCGC 3 cut(s) 96, 220, 579
AclI AACGTT 1 cut(s) 664
AclWI GGATC 2 cut(s) 230, 296
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 3 cut(s) 29, 170, 455
AfaI GTAC 2 cut(s) 210, 281
AfiI CCNNNNNNNGG 1 cut(s) 547
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 6 cut(s) 29, 139, 167, 252, 351, 392
AjiI CACGTC 1 cut(s) 697
AjnI CCWGG 2 cut(s) 184, 540
AluBI AGCT 6 cut(s) 84, 200, 296, 362, 409, 514
AluI AGCT 6 cut(s) 84, 200, 296, 362, 409, 514
Alw21I GWGCWC 3 cut(s) 364, 378, 447
Alw26I GTCTC 2 cut(s) 32, 306
Alw44I GTGCAC 1 cut(s) 443
AlwI GGATC 2 cut(s) 230, 296
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 2 cut(s) 474, 507
ApaLI GTGCAC 1 cut(s) 443
ApeKI GCWGC 3 cut(s) 6, 84, 614
ApoI RAATTY 3 cut(s) 29, 170, 455
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 377
Bbv12I GWGCWC 3 cut(s) 364, 378, 447
BbvI GCAGC 3 cut(s) 18, 71, 601
BccI CCATC 3 cut(s) 256, 328, 751
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 2 cut(s) 186, 542
BcoDI GTCTC 2 cut(s) 32, 306
BfaI CTAG 5 cut(s) 276, 297, 339, 465, 566
BfmI CTRYAG 2 cut(s) 88, 502
BfoI RGCGCY 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 4 cut(s) 7, 85, 97, 615
BlsI GCNGC 4 cut(s) 8, 86, 98, 616
Bme1390I CCNGG 2 cut(s) 186, 542
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 697
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 183, 683
BmrFI CCNGG 2 cut(s) 186, 542
BmsI GCATC 2 cut(s) 18, 406
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 305, 541
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 120, 676
Bse3DI GCAATG 1 cut(s) 447
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 2 cut(s) 186, 542
BseDI CCNNGG 2 cut(s) 305, 541
BseGI GGATG 2 cut(s) 267, 537
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMI GCAATG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 120, 676
BseRI GAGGAG 2 cut(s) 250, 419
BseSI GKGCMC 1 cut(s) 447
BseX3I CGGCCG 1 cut(s) 474
BseXI GCAGC 3 cut(s) 18, 71, 601
BsgI GTGCAG 1 cut(s) 600
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 2 cut(s) 476, 509
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 3 cut(s) 364, 378, 447
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 2 cut(s) 32, 306
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 2 cut(s) 476, 509
Bso31I GGTCTC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 3 cut(s) 364, 378, 447
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 3 cut(s) 120, 222, 288
BspACI CCGC 3 cut(s) 96, 220, 579
BspANI GGCC 2 cut(s) 476, 509
BspEI TCCGGA 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 183, 683
BspPI GGATC 2 cut(s) 230, 296
BspQI GCTCTTC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 2 cut(s) 120, 676
BssECI CCNNGG 2 cut(s) 305, 541
BssMI GATC 3 cut(s) 120, 222, 288
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 186, 542
Bst4CI ACNGT 2 cut(s) 92, 155
Bst6I CTCTTC 2 cut(s) 308, 366
BstAFI CTTAAG 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 103, 647
BstF5I GGATG 2 cut(s) 267, 537
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 3 cut(s) 123, 225, 291
BstMAI GTCTC 2 cut(s) 32, 306
BstMBI GATC 3 cut(s) 120, 222, 288
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 4 cut(s) 93, 102, 614, 646
BstNI CCWGG 2 cut(s) 186, 542
BstSCI CCNGG 2 cut(s) 184, 540
BstSFI CTRYAG 2 cut(s) 88, 502
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 3 cut(s) 18, 71, 601
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BstZI CGGCCG 1 cut(s) 474
BsuRI GGCC 2 cut(s) 476, 509
BtrI CACGTC 1 cut(s) 697
BtsCI GGATG 2 cut(s) 267, 537
BtsIMutI CAGTG 1 cut(s) 683
Cac8I GCNNGC 2 cut(s) 103, 647
CaiI CAGNNNCTG 1 cut(s) 129
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 507
CsiI ACCWGGT 1 cut(s) 184
Csp6I GTAC 2 cut(s) 209, 280
CviAII CATG 1 cut(s) 206
CviQI GTAC 2 cut(s) 209, 280
DpnI GATC 3 cut(s) 122, 224, 290
DpnII GATC 3 cut(s) 120, 222, 288
EaeI YGGCCR 1 cut(s) 474
EagI CGGCCG 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 308, 366
EarI CTCTTC 2 cut(s) 308, 366
EciI GGCGGA 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 362
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 306
Eco52I CGGCCG 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 184, 540
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 1 cut(s) 209
FaiI YATR 8 cut(s) 47, 59, 113, 207, 293, 461, 602, 723
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 4 cut(s) 7, 85, 97, 615
FokI GGATG 2 cut(s) 274, 524
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 7, 85, 97, 615
FspBI CTAG 5 cut(s) 276, 297, 339, 465, 566
GlaI GCGC 1 cut(s) 100
GluI GCNGC 4 cut(s) 7, 85, 97, 615
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 2 cut(s) 476, 509
HapII CCGG 1 cut(s) 365
HhaI GCGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 5 cut(s) 126, 248, 380, 530, 631
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 3 cut(s) 109, 445, 713
Hpy188I TCNGA 3 cut(s) 125, 630, 748
Hpy188III TCNNGA 4 cut(s) 68, 226, 228, 365
Hpy8I GTNNAC 3 cut(s) 109, 445, 713
Hpy99I CGWCG 1 cut(s) 494
HpyCH4III ACNGT 2 cut(s) 92, 155
HpyCH4IV ACGT 2 cut(s) 664, 696
HpyCH4V TGCA 6 cut(s) 445, 452, 524, 617, 649, 669
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 102, 614, 646
HpySE526I ACGT 2 cut(s) 664, 696
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 364
Kzo9I GATC 3 cut(s) 120, 222, 288
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 4 cut(s) 359, 367, 406, 687
Lsp1109I GCAGC 3 cut(s) 18, 71, 601
LweI GCATC 2 cut(s) 18, 406
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 5 cut(s) 276, 297, 339, 465, 566
MaeII ACGT 2 cut(s) 664, 696
MaeIII GTNAC 2 cut(s) 73, 556
MalI GATC 3 cut(s) 122, 224, 290
MboI GATC 3 cut(s) 120, 222, 288
MboII GAAGA 7 cut(s) 127, 179, 325, 343, 380, 383, 478
MfeI CAATTG 1 cut(s) 760
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 3 cut(s) 364, 378, 447
MluCI AATT 6 cut(s) 29, 144, 170, 455, 516, 760
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 7 cut(s) 228, 231, 278, 321, 397, 598, 742
MroI TCCGGA 1 cut(s) 364
MseI TTAA 4 cut(s) 147, 213, 324, 411
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 186, 542
MunI CAATTG 1 cut(s) 760
MvaI CCWGG 2 cut(s) 186, 542
MwoI GCNNNNNNNGC 4 cut(s) 93, 102, 614, 646
NdeII GATC 3 cut(s) 120, 222, 288
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 183, 683
NmeAIII GCCGAG 2 cut(s) 502, 763
NmuCI GTSAC 2 cut(s) 73, 556
PaeR7I CTCGAG 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 366
PfeI GAWTC 4 cut(s) 126, 248, 530, 631
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 4 cut(s) 8, 86, 98, 616
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 184, 540
PspGI CCWGG 2 cut(s) 184, 540
PspN4I GGNNCC 2 cut(s) 183, 683
PspPI GGNCC 1 cut(s) 507
PsrI GAACNNNNNNTAC 2 cut(s) 71, 103
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 222
PvuII CAGCTG 1 cut(s) 84
RsaI GTAC 2 cut(s) 210, 281
RsaNI GTAC 2 cut(s) 209, 280
RseI CAYNNNNRTG 1 cut(s) 720
SacI GAGCTC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 4 cut(s) 147, 213, 324, 411
SatI GCNGC 4 cut(s) 7, 85, 97, 615
Sau3AI GATC 3 cut(s) 120, 222, 288
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 186, 542
SduI GDGCHC 3 cut(s) 364, 378, 447
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 2 cut(s) 18, 406
SfcI CTRYAG 2 cut(s) 88, 502
Sfr274I CTCGAG 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 2 cut(s) 212, 226
SmoI CTYRAG 2 cut(s) 212, 226
Sse9I AATT 6 cut(s) 29, 144, 170, 455, 516, 760
SsiI CCGC 3 cut(s) 96, 220, 579
SspI AATATT 1 cut(s) 399
SspMI CTAG 5 cut(s) 276, 297, 339, 465, 566
SstI GAGCTC 1 cut(s) 364
StyD4I CCNGG 2 cut(s) 184, 540
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 92, 155
TaiI ACGT 2 cut(s) 667, 699
TaqI TCGA 2 cut(s) 227, 489
TasI AATT 6 cut(s) 29, 144, 170, 455, 516, 760
TatI WGTACW 1 cut(s) 208
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 4 cut(s) 126, 248, 530, 631
Tru1I TTAA 4 cut(s) 147, 213, 324, 411
Tru9I TTAA 4 cut(s) 147, 213, 324, 411
TscAI CASTG 1 cut(s) 683
TseFI GTSAC 2 cut(s) 73, 556
TseI GCWGC 3 cut(s) 6, 84, 614
Tsp45I GTSAC 2 cut(s) 73, 556
TspDTI ATGAA 2 cut(s) 448, 526
TspRI CASTG 1 cut(s) 683
Van91I CCANNNNNTGG 1 cut(s) 547
Vha464I CTTAAG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 443
XapI RAATTY 3 cut(s) 29, 170, 455
XhoI CTCGAG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 712
XspI CTAG 5 cut(s) 276, 297, 339, 465, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.