Rh7AG428600

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000672
Physical Location & Seq
Forward (+)
57614661 .. 57614990
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG428600.1

Sequence Viewer

Length: 330 bp
ATGGAGAGACTTGCTAGGTATCAAAGGGTCATAGCTGGGTCTCCCAGGGGAGCGAACAAGTTACGGAGCAAGTTGGGTAAGTACCTTACCACAACTGTGGGAATTCACCAAAATGAGCAATCGTTTATTATTGAACAAATATTGGAAACGCTCCAAAAAGCCGATAAAATTATAGAAGTGCACTTGATAGAAATTACATTTAGAAGTACGAATTGGTCCTTTCTGTGGGGCTTCGACGATATATACTACAGGGCTAAACTATTATCATCGACATTGCATTGTCCACTGGCTCCAGATCAATCATGTCTGTACCACTCGTCGACACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

109

Amino Acids

12.57

Weight (kDa)

9.0

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 3 cut(s) 83, 208, 311
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 45
Alw44I GTGCAC 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 44, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 2 cut(s) 44, 45
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 272
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 44, 45
BssMI GATC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 97
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 3 cut(s) 82, 207, 310
CviAII CATG 1 cut(s) 303
CviJI RGCY 5 cut(s) 35, 161, 231, 254, 290
CviKI_1 RGCY 5 cut(s) 35, 161, 231, 254, 290
CviQI GTAC 3 cut(s) 82, 207, 310
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 306
FaiI YATR 5 cut(s) 32, 173, 242, 244, 304
FatI CATG 1 cut(s) 302
FblI GTMKAC 1 cut(s) 320
FspBI CTAG 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 276
Hin1II CATG 1 cut(s) 306
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 3 cut(s) 181, 284, 321
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 3 cut(s) 181, 284, 321
Hpy99I CGWCG 2 cut(s) 239, 322
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 181, 277
Hsp92II CATG 1 cut(s) 306
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 4 cut(s) 50, 66, 156, 295
LpnPI CCDG 6 cut(s) 21, 31, 58, 235, 272, 306
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 60
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 102, 168, 192, 211
MslI CAYNNNNRTG 2 cut(s) 95, 111
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 291
OliI CACNNNNGTG 1 cut(s) 95
PasI CCCWGGG 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 3 cut(s) 83, 208, 311
RsaNI GTAC 3 cut(s) 82, 207, 310
RseI CAYNNNNRTG 2 cut(s) 95, 111
SalI GTCGAC 1 cut(s) 319
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 183
SetI ASST 3 cut(s) 20, 37, 87
SfcI CTRYAG 1 cut(s) 247
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 2 cut(s) 95, 111
Sse9I AATT 4 cut(s) 102, 168, 192, 211
SspI AATATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 234, 269, 320
TasI AATT 4 cut(s) 102, 168, 192, 211
TscAI CASTG 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 291
VneI GTGCAC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.