FvH4_2g35510

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000672
Physical Location & Seq
Reverse (-)
26153110 .. 26155479
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35510.t1

Sequence Viewer

Length: 501 bp
ATGAGCACCGTTTACCCGTATGAGAGACTTGAACATGCCAGCACAGTTTATCAGAGCCGGGAAAGCACCTACCGAAGCAGATCCTGCGTGGACGTAATTCCGATCAAAGTCCAGCGATGGAAGGCATATGGCAACTATAATCCAGAAACCCATCAGTATGATAAGGAAGGACCAATTGTGCAATCCACAAACACTCTCAAGTTGCGGTTCTCGAGGGAGAAGGCGAGCGGCGATGCAAAGACGACCATGGAGAGATTGGCAAGGTACAAGAGGATCATTGCTGGGTCTCCCAGGGAAGCCAACAAGTTACGGGACAAATTGCGTAGGTACGTTTACAACAAAGTCGGTGTTGCCGAAAATCAGCATCCGTCTATTATTGATCAAATACTCAATGTGCTTCGAAGAGCCGTCCCTGATAAGATTATCGAGGTTCGAGCAATGAATATAATATATAGATATACGGAGGAACGGCACCTGGAGTTGCTGTCGGAAGATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

167

Amino Acids

19.52

Weight (kDa)

9.65

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 471
AccBSI CCGCTC 1 cut(s) 228
AciI CCGC 2 cut(s) 205, 228
AclWI GGATC 2 cut(s) 75, 281
AfaI GTAC 2 cut(s) 266, 329
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 2 cut(s) 290, 474
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 19, 291
AlwI GGATC 2 cut(s) 75, 281
AlwNI CAGNNNCTG 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 111, 159
BceAI ACGGC 2 cut(s) 392, 485
BciT130I CCWGG 2 cut(s) 292, 476
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 19, 291
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 3 cut(s) 59, 292, 476
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 3 cut(s) 59, 292, 476
BmsI GCATC 3 cut(s) 223, 373, 484
BpmI CTGGAG 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 246, 290, 291
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bse3DI GCAATG 2 cut(s) 276, 444
BseBI CCWGG 2 cut(s) 292, 476
BseDI CCNNGG 3 cut(s) 246, 290, 291
BseGI GGATG 1 cut(s) 364
BseMI GCAATG 2 cut(s) 276, 444
BseYI CCCAGC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 2 cut(s) 326, 395
BsmAI GTCTC 2 cut(s) 19, 291
BsmFI GGGAC 2 cut(s) 326, 395
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 80, 102, 273, 379
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 2 cut(s) 205, 228
BspLI GGNNCC 1 cut(s) 473
BspPI GGATC 2 cut(s) 75, 281
BspQI GCTCTTC 1 cut(s) 397
BspT104I TTCGAA 1 cut(s) 400
BspT107I GGYRCC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 291
BsrBI CCGCTC 1 cut(s) 228
BsrDI GCAATG 2 cut(s) 276, 444
BssECI CCNNGG 3 cut(s) 246, 290, 291
BssMI GATC 4 cut(s) 80, 102, 273, 379
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 292, 476
Bst4CI ACNGT 2 cut(s) 10, 46
Bst6I CTCTTC 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 40, 226
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 4 cut(s) 83, 105, 276, 382
BstMAI GTCTC 2 cut(s) 19, 291
BstMBI GATC 4 cut(s) 80, 102, 273, 379
BstMWI GCNNNNNNNGC 2 cut(s) 63, 84
BstNI CCWGG 2 cut(s) 292, 476
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 3 cut(s) 57, 290, 474
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 2 cut(s) 130, 246
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 40, 226
CaiI CAGNNNCTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 265, 328
CviAII CATG 2 cut(s) 35, 247
CviJI RGCY 3 cut(s) 57, 299, 407
CviKI_1 RGCY 3 cut(s) 57, 299, 407
CviQI GTAC 2 cut(s) 265, 328
DpnI GATC 4 cut(s) 82, 104, 275, 381
DpnII GATC 4 cut(s) 80, 102, 273, 379
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 290, 474
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 38, 250
FaqI GGGAC 2 cut(s) 326, 395
FatI CATG 2 cut(s) 34, 246
FauNDI CATATG 1 cut(s) 127
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 229
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 497
HapII CCGG 1 cut(s) 58
Hin1II CATG 2 cut(s) 38, 250
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 3 cut(s) 13, 91, 334
Hpy188I TCNGA 3 cut(s) 54, 102, 490
Hpy188III TCNNGA 2 cut(s) 143, 211
Hpy8I GTNNAC 3 cut(s) 13, 91, 334
HpyAV CCTTC 3 cut(s) 115, 161, 214
HpyCH4III ACNGT 2 cut(s) 10, 46
HpyCH4IV ACGT 2 cut(s) 93, 330
HpyCH4V TGCA 2 cut(s) 181, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 84
HpySE526I ACGT 2 cut(s) 93, 330
Hsp92II CATG 2 cut(s) 38, 250
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 4 cut(s) 80, 102, 273, 379
LguI GCTCTTC 1 cut(s) 397
LweI GCATC 3 cut(s) 223, 373, 484
MaeII ACGT 2 cut(s) 93, 330
MaeIII GTNAC 1 cut(s) 306
MalI GATC 4 cut(s) 82, 104, 275, 381
MbiI CCGCTC 1 cut(s) 228
MboI GATC 4 cut(s) 80, 102, 273, 379
MboII GAAGA 1 cut(s) 414
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 96, 174, 317
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 4 cut(s) 207, 264, 421, 457
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 3 cut(s) 59, 292, 476
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 2 cut(s) 292, 476
MwoI GCNNNNNNNGC 2 cut(s) 63, 84
NciI CCSGG 1 cut(s) 59
NcoI CCATGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 127
NdeII GATC 4 cut(s) 80, 102, 273, 379
NlaIII CATG 2 cut(s) 38, 250
NlaIV GGNNCC 1 cut(s) 473
NspI RCATGY 1 cut(s) 38
NspV TTCGAA 1 cut(s) 400
PaeR7I CTCGAG 1 cut(s) 211
PasI CCCWGGG 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 397
PcsI WCGNNNNNNNCGW 2 cut(s) 351, 494
PkrI GCNGC 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 290, 474
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 2 cut(s) 290, 474
PspN4I GGNNCC 1 cut(s) 473
PspPI GGNCC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 84
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 266, 329
RsaNI GTAC 2 cut(s) 265, 328
RseI CAYNNNNRTG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 397
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 4 cut(s) 80, 102, 273, 379
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 59, 292, 476
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 71, 96, 266, 329, 333, 432, 477
SfaNI GCATC 3 cut(s) 223, 373, 484
Sfr274I CTCGAG 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 400
SinI GGWCC 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 197, 211
SmoI CTYRAG 2 cut(s) 197, 211
Sse9I AATT 3 cut(s) 96, 174, 317
SsiI CCGC 2 cut(s) 205, 228
StyD4I CCNGG 3 cut(s) 57, 290, 474
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 10, 46
TaiI ACGT 2 cut(s) 96, 333
TaqI TCGA 4 cut(s) 212, 400, 426, 433
TasI AATT 3 cut(s) 96, 174, 317
TauI GCSGC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 2 cut(s) 357, 476
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.