FvH4_2g37001

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000672
Physical Location & Seq
Forward (+)
27010163 .. 27012211
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37001.t1

Sequence Viewer

Length: 783 bp
ATGAGCACCTTTTCTGATGATGAGAATTATTATTCGTTGTTCGAGACCCATCATGAATTTTCCAGCCAAGCAATTCAAATCAATAATATCAGGCACCGAAGCAGAGCCGGCGTGGACATAATTCCGATCACATTCCTCCATTTCAGGGTATATATAAACTACGATCCAGTTGTCCGTGGCTATGTTGTTGACCCACCAACTCTGTTACTTAAGAGAACTCTCAAGTTGCGGTTCTCCAGGGAGAAGGCCATCAGTGGAGATGCAAAGACAAGATTGGAGAGATTTGCAAGGTATAAAAGGGTCATAGCTGGCTCACCCAAGGAAGCTAACAAGTTACGGAACAAGCTGGGTAGAGATACAGCGGAGTCAATGCACATGAACTTGAACCCGGACGATGAAGACTTCAAGCCCAAAATGATTCCGGCATCAGAATCATTCATCCTAGCTCTGGAGGAAGCGAGTCCACCAGATGATGATGAATTAGAGTGTGCTATTTCCTTTCCGATTGCTTCTAAGAAGAATGGTCGGTCTGCCACAATGAACCAACACGACATCCACACAGTGGCAGAGAATAATGAAACTCTGACATGCTGCCAGGCCGAGGCTGCTGCCGCTGCCGCCCTCATCGCCGAGGCGGCCGCTGCTGCTGTTCTTGAAGCGGCGGCTGCTGTCCCAGCTGTCCCCGAGGCGGCTGTTGCTGTTGTGGACATAGCGGCAATCCAGCAGATAACAAATGCAAGGGTTTCAGCCTTGCACAACACTACGGTAAGTTTTTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

261

Amino Acids

28.63

Weight (kDa)

5.78

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 562
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 562
AfiI CCNNNNNNNGG 5 cut(s) 145, 448, 562, 601, 688
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 4 cut(s) 77, 385, 406, 656
AjnI CCWGG 2 cut(s) 236, 594
AluBI AGCT 5 cut(s) 308, 326, 346, 446, 677
AluI AGCT 5 cut(s) 308, 326, 346, 446, 677
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 3 cut(s) 246, 597, 636
ApeKI GCWGC 7 cut(s) 591, 605, 608, 614, 641, 644, 665
ApoI RAATTY 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 683
BanI GGYRCC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 7 cut(s) 578, 592, 595, 601, 628, 631, 652
BccI CCATC 2 cut(s) 57, 257
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 2 cut(s) 238, 596
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 443
BfrI CTTAAG 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 635
Bme1390I CCNGG 3 cut(s) 238, 389, 596
BmeT110I CYCGRG 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 3 cut(s) 238, 389, 596
BmsI GCATC 2 cut(s) 250, 434
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 2 cut(s) 220, 470
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 6 cut(s) 175, 237, 318, 600, 630, 684
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 448, 562, 601, 688
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 2 cut(s) 238, 596
BseDI CCNNGG 6 cut(s) 175, 237, 318, 600, 630, 684
BseGI GGATG 2 cut(s) 438, 552
BseLI CCNNNNNNNGG 5 cut(s) 145, 448, 562, 601, 688
BseNI ACTGG 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 636
BseXI GCAGC 7 cut(s) 578, 592, 595, 601, 628, 631, 652
BseYI CCCAGC 2 cut(s) 346, 673
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 3 cut(s) 248, 599, 638
BshNI GGYRCC 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 639
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 3 cut(s) 108, 389, 422
BslFI GGGAC 2 cut(s) 656, 665
BslI CCNNNNNNNGG 5 cut(s) 145, 448, 562, 601, 688
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 656, 665
BsnI GGCC 3 cut(s) 248, 599, 638
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 126, 163
BspANI GGCC 3 cut(s) 248, 599, 638
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 93
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 6 cut(s) 175, 237, 318, 600, 630, 684
BssMI GATC 2 cut(s) 126, 163
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 238, 596
Bst4CI ACNGT 2 cut(s) 562, 766
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 109, 310
BstDEI CTNAG 1 cut(s) 513
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 438, 552
BstKTI GATC 2 cut(s) 129, 166
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 126, 163
BstMCI CGRYCG 1 cut(s) 639
BstNI CCWGG 2 cut(s) 238, 596
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 3 cut(s) 236, 387, 594
BstV1I GCAGC 7 cut(s) 578, 592, 595, 601, 628, 631, 652
BstV2I GAAGAC 1 cut(s) 405
BstZI CGGCCG 1 cut(s) 636
BsuRI GGCC 3 cut(s) 248, 599, 638
BtgI CCRYGG 1 cut(s) 175
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 2 cut(s) 438, 552
BtsIMutI CAGTG 2 cut(s) 259, 567
Cac8I GCNNGC 2 cut(s) 109, 310
CciI TCATGA 1 cut(s) 52
CciNI GCGGCCGC 1 cut(s) 636
Cfr10I RCCGGY 1 cut(s) 107
CviAII CATG 3 cut(s) 53, 376, 588
DdeI CTNAG 1 cut(s) 513
DpnI GATC 2 cut(s) 128, 165
DpnII GATC 2 cut(s) 126, 163
DraIII CACNNNGTG 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 636
EagI CGGCCG 1 cut(s) 636
EclXI CGGCCG 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 38
Eco52I CGGCCG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 236, 594
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 56, 379, 591
FaqI GGGAC 2 cut(s) 656, 665
FatI CATG 3 cut(s) 52, 375, 587
FokI GGATG 2 cut(s) 425, 539
FspBI CTAG 1 cut(s) 443
GsaI CCCAGC 2 cut(s) 350, 677
GsuI CTGGAG 2 cut(s) 220, 470
HaeIII GGCC 3 cut(s) 248, 599, 638
HapII CCGG 3 cut(s) 108, 389, 422
Hin1II CATG 3 cut(s) 56, 379, 591
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 4 cut(s) 365, 418, 431, 460
HpaII CCGG 3 cut(s) 108, 389, 422
HphI GGTGA 1 cut(s) 306
Hpy166II GTNNAC 4 cut(s) 115, 190, 464, 706
Hpy188I TCNGA 5 cut(s) 16, 126, 430, 504, 585
Hpy188III TCNNGA 4 cut(s) 43, 53, 449, 653
Hpy8I GTNNAC 4 cut(s) 115, 190, 464, 706
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 562, 766
HpyCH4V TGCA 5 cut(s) 263, 287, 373, 737, 754
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 3 cut(s) 56, 379, 591
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 126, 163
Lsp1109I GCAGC 7 cut(s) 578, 592, 595, 601, 628, 631, 652
LweI GCATC 2 cut(s) 250, 434
MaeI CTAG 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 204, 333
MalI GATC 2 cut(s) 128, 165
MboI GATC 2 cut(s) 126, 163
MboII GAAGA 2 cut(s) 410, 529
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 25, 56, 72, 120, 479
MlyI GAGTC 2 cut(s) 374, 469
MnlI CCTC 6 cut(s) 146, 445, 595, 625, 632, 679
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 4 cut(s) 362, 614, 641, 677
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 3 cut(s) 108, 389, 422
MspR9I CCNGG 3 cut(s) 238, 389, 596
MvaI CCWGG 2 cut(s) 238, 596
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 1 cut(s) 389
NdeII GATC 2 cut(s) 126, 163
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 3 cut(s) 56, 379, 591
NlaIV GGNNCC 1 cut(s) 95
NmeAIII GCCGAG 2 cut(s) 625, 655
NotI GCGGCCGC 1 cut(s) 636
NspI RCATGY 1 cut(s) 591
PagI TCATGA 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 418, 431
PflMI CCANNNNNTGG 1 cut(s) 562
PleI GAGTC 2 cut(s) 373, 468
PpsI GAGTC 2 cut(s) 373, 468
Psp6I CCWGG 2 cut(s) 236, 594
PspFI CCCAGC 2 cut(s) 346, 673
PspGI CCWGG 2 cut(s) 236, 594
PspN4I GGNNCC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 677
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 2 cut(s) 126, 163
SchI GAGTC 2 cut(s) 374, 469
ScrFI CCNGG 3 cut(s) 238, 389, 596
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 11, 293, 310, 328, 348, 448, 679
SfaNI GCATC 2 cut(s) 250, 434
SmlI CTYRAG 2 cut(s) 209, 221
SmoI CTYRAG 2 cut(s) 209, 221
Sse9I AATT 5 cut(s) 25, 56, 72, 120, 479
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 3 cut(s) 236, 387, 594
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 562, 766
TaqI TCGA 1 cut(s) 42
TaqII GACCGA 1 cut(s) 516
TasI AATT 5 cut(s) 25, 56, 72, 120, 479
TauI GCSGC 8 cut(s) 614, 620, 638, 641, 662, 665, 692, 716
TfiI GAWTC 2 cut(s) 418, 431
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 259, 567
TseI GCWGC 7 cut(s) 591, 605, 608, 614, 641, 644, 665
TspDTI ATGAA 7 cut(s) 69, 392, 411, 427, 492, 554, 591
TspGWI ACGGA 2 cut(s) 164, 352
TspRI CASTG 2 cut(s) 259, 567
Van91I CCANNNNNTGG 1 cut(s) 562
Vha464I CTTAAG 1 cut(s) 209
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 591
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.