Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003473.1

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

38884 .. 39642

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003473.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgaccaccatatttgagagacgtgaatttaccaccgccgttttacaaaggtgtgaaaacaaaacctaccgaagcaaatcctgcgtggacgtacttccgatcaaattcttccggtggaaggcatattcagaccataacccagatatgcaagtttttgaccctagacctccaactttgttatctacaaaagttctcaagttgcggttctcgagggagagggcaagtggaaatgcaaagacaacgatggagagacttgctaggtaccaaagggtcatagctgggtctcccagggaagcaaacaagttagagaacaagttgggtaggtaccttaccacaactatgggaattcacgaagatgagcaaccgtttgctattgtaaaaatattggaaatgctccgagaagccgtccccgataaaattatagaagtgcacttgatagatattacatttacaagtacgaattggtaccttctgtggggcttcaacgaggacgaggacgatatatactacagggctaagctggttcctgctccgaaatcattcatcgagtctctggaggaagtgagactacttgatgatgataatctggaattgcttggattggagtgtcctatttgtatgcaggtgtttgcagagaaaaaagataccagcattactcggttgccatgctcacactattatcatcgacattgcattgtccagtggctccagatccatcatgtctgtcccacttgtcgacaccctaatgctccgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

252

Amino Acids

29.56

Weight (kDa)

7.62

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
Acc65I	GGTACC	3 cut(s)	261, 324, 465
AccB1I	GGYRCC	3 cut(s)	261, 324, 465
AccI	GTMKAC	1 cut(s)	736
AciI	CCGC	2 cut(s)	36, 202
AclWI	GGATC	1 cut(s)	706
AcsI	RAATTY	3 cut(s)	26, 104, 345
AfaI	GTAC	5 cut(s)	93, 263, 326, 457, 467
AfiI	CCNNNNNNNGG	2 cut(s)	118, 475
AgsI	TTSAA	1 cut(s)	484
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	278, 520
AluI	AGCT	2 cut(s)	278, 520
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	5 cut(s)	13, 244, 288, 555, 559
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	706
Ama87I	CYCGRG	1 cut(s)	208
ApaLI	GTGCAC	1 cut(s)	428
ApoI	RAATTY	3 cut(s)	26, 104, 345
Asp700I	GAANNNNTTC	1 cut(s)	539
Asp718I	GGTACC	3 cut(s)	261, 324, 465
AvaI	CYCGRG	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	432
BanI	GGYRCC	3 cut(s)	261, 324, 465
BarI	GAAGNNNNNNTAC	2 cut(s)	552, 584
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	2 cut(s)	238, 723
BceAI	ACGGC	2 cut(s)	23, 389
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BfaI	CTAG	2 cut(s)	162, 258
BfmI	CTRYAG	1 cut(s)	508
BfuAI	ACCTGC	1 cut(s)	613
BlpI	GCTNAGC	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	23
BmiI	GGNNCC	5 cut(s)	263, 326, 467, 525, 707
BmrFI	CCNGG	1 cut(s)	289
BpmI	CTGGAG	2 cut(s)	575, 692
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	287, 288
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 475
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	688
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	287, 288
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	118, 475
BseMI	GCAATG	1 cut(s)	688
BseNI	ACTGG	1 cut(s)	700
BseSI	GKGCMC	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	278
BshNI	GGYRCC	3 cut(s)	261, 324, 465
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	392, 711
BslI	CCNNNNNNNGG	2 cut(s)	118, 475
BsmAI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	392, 711
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	99, 711
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	36, 202
BspLI	GGNNCC	5 cut(s)	263, 326, 467, 525, 707
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	706
BspT107I	GGYRCC	3 cut(s)	261, 324, 465
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	287, 288
BssMI	GATC	2 cut(s)	99, 711
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	516
BstKTI	GATC	2 cut(s)	102, 714
BstMAI	GTCTC	5 cut(s)	13, 244, 288, 555, 559
BstMBI	GATC	2 cut(s)	99, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	711
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	711
BtrI	CACGTC	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	707
BveI	ACCTGC	1 cut(s)	613
Csp6I	GTAC	5 cut(s)	92, 262, 325, 456, 466
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	2 cut(s)	666, 719
CviJI	RGCY	6 cut(s)	278, 404, 480, 515, 520, 706
CviKI_1	RGCY	6 cut(s)	278, 404, 480, 515, 520, 706
CviQI	GTAC	5 cut(s)	92, 262, 325, 456, 466
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	2 cut(s)	101, 713
DpnII	GATC	2 cut(s)	99, 711
Eco31I	GGTCTC	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	2 cut(s)	669, 722
FaqI	GGGAC	2 cut(s)	392, 711
FatI	CATG	2 cut(s)	665, 718
FblI	GTMKAC	1 cut(s)	736
FspBI	CTAG	2 cut(s)	162, 258
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	575, 692
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	669, 722
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	88, 430, 737
Hpy188I	TCNGA	5 cut(s)	99, 130, 398, 534, 753
Hpy188III	TCNNGA	5 cut(s)	208, 350, 554, 587, 709
Hpy8I	GTNNAC	3 cut(s)	88, 430, 737
HpyAV	CCTTC	2 cut(s)	112, 479
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	2 cut(s)	22, 90
HpyCH4V	TGCA	6 cut(s)	148, 233, 430, 622, 632, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	2 cut(s)	22, 90
Hsp92II	CATG	2 cut(s)	669, 722
KpnI	GGTACC	3 cut(s)	265, 328, 469
Kzo9I	GATC	2 cut(s)	99, 711
LmnI	GCTCC	4 cut(s)	399, 535, 711, 754
MaeI	CTAG	2 cut(s)	162, 258
MaeII	ACGT	2 cut(s)	22, 90
MalI	GATC	2 cut(s)	101, 713
MboI	GATC	2 cut(s)	99, 711
MboII	GAAGA	2 cut(s)	100, 365
MflI	RGATCY	1 cut(s)	711
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	6 cut(s)	26, 104, 345, 417, 460, 590
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	6 cut(s)	177, 204, 210, 481, 487, 550
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	1 cut(s)	757
MslI	CAYNNNNRTG	3 cut(s)	338, 354, 744
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	2 cut(s)	99, 711
NlaIII	CATG	2 cut(s)	669, 722
NlaIV	GGNNCC	5 cut(s)	263, 326, 467, 525, 707
PaeR7I	CTCGAG	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	613
PasI	CCCWGGG	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	539
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	5 cut(s)	263, 326, 467, 525, 707
PsuI	RGATCY	1 cut(s)	711
RsaI	GTAC	5 cut(s)	93, 263, 326, 457, 467
RsaNI	GTAC	5 cut(s)	92, 262, 325, 456, 466
RseI	CAYNNNNRTG	3 cut(s)	338, 354, 744
SalI	GTCGAC	1 cut(s)	735
SaqAI	TTAA	1 cut(s)	757
Sau3AI	GATC	2 cut(s)	99, 711
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	508
Sfr274I	CTCGAG	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	3 cut(s)	338, 354, 744
SmlI	CTYRAG	2 cut(s)	194, 208
SmoI	CTYRAG	2 cut(s)	194, 208
Sse9I	AATT	6 cut(s)	26, 104, 345, 417, 460, 590
SsiI	CCGC	2 cut(s)	36, 202
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	162, 258
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	2 cut(s)	25, 93
TaqI	TCGA	4 cut(s)	209, 546, 685, 736
TasI	AATT	6 cut(s)	26, 104, 345, 417, 460, 590
Tru1I	TTAA	1 cut(s)	757
Tru9I	TTAA	1 cut(s)	757
TscAI	CASTG	1 cut(s)	707
TspDTI	ATGAA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	707
VneI	GTGCAC	1 cut(s)	428
XapI	RAATTY	3 cut(s)	26, 104, 345
XhoI	CTCGAG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	2 cut(s)	162, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.