Rw5G004660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000672
Physical Location & Seq
Reverse (-)
4852222 .. 4862735
10514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G004660.1

Sequence Viewer

Length: 546 bp
ATGGAACTGGTGGCAATTGGATTCATCTGCCACAAAAAGCTGGCTTTTAGGTTCTTCAACAAGATTCAAGTCAACCACATTAAGAAAAGTCAGTTTATCAACATGCAGACACTACTAGCTAACAAACCTACTACTTCTTACTGTACCAAAATTAAGCAATATCAGTATATCAAAGATACAAAACGAATTGCTTCTAAAACCTCAAGGTTCTTTTACGAATCTGACCTAATGTCAAAACCTAATCTTATTGGCGGTTATGATTATGCATTCCGTTCTAATAGAAAGACCGACAATCAACTTCTCTCTGTGAACCGAAACCAAAATGGCCATATTGGGTCAGTACAAAAAATGGAAGTAGAAGTGGAAGCGACAGTACGCCATCAACTATCACATCCAGAAGATGCAAATCCGAATCCAAATGAAGCCATTGATGGTGTTCTAGGCGCCGCAGTCGTCGACAAGAGAAGGGAGATGAAGGCGAAAATCATGGGCTTGTGGTCGTGTGGGAAGAGAATGGAAGGTCTGCATGAGAGCTTACTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.77

Weight (kDa)

9.58

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 456
AciI CCGC 2 cut(s) 252, 447
AcoI YGGCCR 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 3 cut(s) 145, 342, 375
AgsI TTSAA 2 cut(s) 58, 68
AhdI GACNNNNNGTC 1 cut(s) 229
AluBI AGCT 3 cut(s) 40, 119, 534
AluI AGCT 3 cut(s) 40, 119, 534
AoxI GGCC 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 446
BalI TGGCCA 1 cut(s) 327
BanI GGYRCC 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BccI CCATC 2 cut(s) 387, 425
BfaI CTAG 2 cut(s) 116, 440
BfoI RGCGCY 1 cut(s) 447
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
BmeRI GACNNNNNGTC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 445
BmsI GCATC 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 444
Bse1I ACTGG 2 cut(s) 12, 543
Bse8I GATNNNNATC 1 cut(s) 405
BseGI GGATG 1 cut(s) 391
BseJI GATNNNNATC 1 cut(s) 405
BseNI ACTGG 2 cut(s) 12, 543
BshFI GGCC 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 327
BspACI CCGC 2 cut(s) 252, 447
BspANI GGCC 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 445
BspT107I GGYRCC 1 cut(s) 443
BsrI ACTGG 2 cut(s) 12, 543
BssNI GRCGYC 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 143, 373
Bst6I CTCTTC 1 cut(s) 503
BstACI GRCGYC 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 144, 341, 374
CviAII CATG 3 cut(s) 103, 487, 527
CviJI RGCY 7 cut(s) 40, 44, 119, 327, 425, 492, 534
CviKI_1 RGCY 7 cut(s) 40, 44, 119, 327, 425, 492, 534
CviQI GTAC 3 cut(s) 144, 341, 374
DinI GGCGCC 1 cut(s) 445
DriI GACNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 503
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 503
EcoT22I ATGCAT 1 cut(s) 268
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
FaeI CATG 3 cut(s) 106, 490, 530
FaiI YATR 7 cut(s) 104, 168, 258, 264, 330, 488, 528
FatI CATG 3 cut(s) 102, 486, 526
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 2 cut(s) 116, 440
GlaI GCGC 1 cut(s) 445
GluI GCNGC 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 1 cut(s) 327
HhaI GCGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 3 cut(s) 106, 490, 530
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HincII GTYRAC 2 cut(s) 73, 457
HindII GTYRAC 2 cut(s) 73, 457
HinfI GANTC 4 cut(s) 21, 64, 218, 412
Hpy166II GTNNAC 3 cut(s) 73, 310, 457
Hpy188I TCNGA 2 cut(s) 223, 411
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 3 cut(s) 73, 310, 457
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 3 cut(s) 459, 469, 512
HpyCH4III ACNGT 2 cut(s) 143, 373
HpyCH4V TGCA 4 cut(s) 106, 266, 404, 526
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 106, 490, 530
HspAI GCGC 1 cut(s) 444
KasI GGCGCC 1 cut(s) 443
LpnPI CCDG 3 cut(s) 26, 408, 524
LweI GCATC 1 cut(s) 391
MaeI CTAG 2 cut(s) 116, 440
MboII GAAGA 3 cut(s) 46, 410, 520
MfeI CAATTG 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 327
MluCI AATT 3 cut(s) 15, 150, 186
MluNI TGGCCA 1 cut(s) 327
Mly113I GGCGCC 1 cut(s) 444
MnlI CCTC 1 cut(s) 211
Mox20I TGGCCA 1 cut(s) 327
Mph1103I ATGCAT 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 190
MscI TGGCCA 1 cut(s) 327
MseI TTAA 2 cut(s) 81, 153
Msp20I TGGCCA 1 cut(s) 327
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 266
NarI GGCGCC 1 cut(s) 444
NlaIII CATG 3 cut(s) 106, 490, 530
NlaIV GGNNCC 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 106
PctI GAATGC 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 4 cut(s) 21, 64, 218, 412
PkrI GCNGC 1 cut(s) 448
PluTI GGCGCC 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 445
RsaI GTAC 3 cut(s) 145, 342, 375
RsaNI GTAC 3 cut(s) 144, 341, 374
SalI GTCGAC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 81, 153
SatI GCNGC 1 cut(s) 447
SfaNI GCATC 1 cut(s) 391
SfoI GGCGCC 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 15, 150, 186
SsiI CCGC 2 cut(s) 252, 447
SspDI GGCGCC 1 cut(s) 443
SspMI CTAG 2 cut(s) 116, 440
TaaI ACNGT 2 cut(s) 143, 373
TaqI TCGA 1 cut(s) 456
TaqII GACCGA 1 cut(s) 302
TasI AATT 3 cut(s) 15, 150, 186
TatI WGTACW 1 cut(s) 340
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 4 cut(s) 21, 64, 218, 412
Tru1I TTAA 2 cut(s) 81, 153
Tru9I TTAA 2 cut(s) 81, 153
TspDTI ATGAA 3 cut(s) 13, 435, 488
TspGWI ACGGA 1 cut(s) 260
XceI RCATGY 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 2 cut(s) 116, 440
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.