Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020534.1

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

27272 .. 28078

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020534.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgaccaccaccgtcaccggaagccgtgaatctccgcatgagagacgcaatatttccaccgtagtttaccaagaccatataaaccaatccttcacaagcagcgccggcgtggacgtacttccgatcagattccggctctttaaggtaactgctaactataatccgattctccacgattatgatctcgaaactccaattcccatatctacacatgtatatttgctgcggttctcggcggagtggcggagctggaattcaaagataacgatggagaggttggctaggtatcataggacgattgctaagtgtggttggcagatggataagttggtagacaagctggcaaggtatctttctgatactgtgggtgttgaagaggatcaacacccttgtactattctgaaaacggtggagatgattcaagccgccgtctacgaccgggttatcgatgtgcagatatctgacatcacatttatcgaaccggaacctgaaccggaggaggaatctgagctggaggaggagtctgaaccggaggaggagtcggaacaagaggagtctgaaacggaggaggattctgaacaggagggattcgaggatttggacgacacatcgtacggggacaatctgactcctgcatctgaatcattcatggaggatttgaagaaattgagagtacttggttcggaattggaaatgcttgggcagacgccaaactgtgctatttgtctggaggtgcttgctgaagaaggatatgaccattactcgtttgccttgcttacactattatcatcgggattgcattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

268

Amino Acids

30.76

Weight (kDa)

4.35

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	333, 432
AciI	CCGC	5 cut(s)	35, 226, 236, 244, 426
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	762
AcyI	GRCGYC	1 cut(s)	707
AfaI	GTAC	4 cut(s)	117, 394, 614, 675
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	258, 374, 422, 661
AluBI	AGCT	3 cut(s)	249, 340, 511
AluI	AGCT	3 cut(s)	249, 340, 511
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	99, 223
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	111, 210
BccI	CCATC	2 cut(s)	262, 313
BceAI	ACGGC	2 cut(s)	9, 413
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	3 cut(s)	100, 224, 426
BlsI	GCNGC	3 cut(s)	101, 225, 427
BmcAI	AGTACT	1 cut(s)	675
Bme1390I	CCNGG	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	644
BpmI	CTGGAG	2 cut(s)	533, 749
BpuMI	CCSGG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	707
BsaWI	WCCGGW	4 cut(s)	17, 481, 493, 529
BsaXI	ACNNNNNCTCC	4 cut(s)	506, 524, 536, 554
Bse118I	RCCGGY	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	447
BseJI	GATNNNNATC	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	498
BseRI	GAGGAG	7 cut(s)	512, 530, 533, 548, 551, 566, 581
BseXI	GCAGC	2 cut(s)	111, 210
BsgI	GTGCAG	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
BsiWI	CGTACG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	632
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	632
Bsp143I	GATC	3 cut(s)	123, 181, 379
BspACI	CCGC	5 cut(s)	35, 226, 236, 244, 426
BspCNI	CTCAG	1 cut(s)	499
BspDI	ATCGAT	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	3 cut(s)	123, 181, 379
BssNI	GRCGYC	1 cut(s)	707
Bst4CI	ACNGT	5 cut(s)	13, 61, 364, 409, 716
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	707
BstC8I	GCNNGC	3 cut(s)	106, 342, 738
BstDEI	CTNAG	2 cut(s)	303, 507
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	126, 184, 382
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	123, 181, 379
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	111, 210
Bsu15I	ATCGAT	1 cut(s)	447
BsuTUI	ATCGAT	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	106, 342, 738
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	447
CseI	GACGC	2 cut(s)	54, 715
Csp6I	GTAC	4 cut(s)	116, 393, 613, 674
CviAII	CATG	3 cut(s)	38, 212, 649
CviJI	RGCY	7 cut(s)	24, 136, 249, 281, 340, 425, 511
CviKI_1	RGCY	7 cut(s)	24, 136, 249, 281, 340, 425, 511
CviQI	GTAC	4 cut(s)	116, 393, 613, 674
DdeI	CTNAG	2 cut(s)	303, 507
DpnI	GATC	3 cut(s)	125, 183, 381
DpnII	GATC	3 cut(s)	123, 181, 379
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	2 cut(s)	251, 259
Eco32I	GATATC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	762
EcoRI	GAATTC	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	3 cut(s)	41, 215, 652
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	3 cut(s)	37, 211, 648
FblI	GTMKAC	2 cut(s)	333, 432
Fnu4HI	GCNGC	3 cut(s)	100, 224, 426
Fsp4HI	GCNGC	3 cut(s)	100, 224, 426
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	100, 224, 426
GsuI	CTGGAG	2 cut(s)	533, 749
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
HgaI	GACGC	2 cut(s)	54, 715
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	707
Hin1II	CATG	3 cut(s)	41, 215, 652
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HpaII	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	4 cut(s)	67, 112, 334, 433
Hpy188III	TCNNGA	3 cut(s)	185, 728, 792
Hpy8I	GTNNAC	4 cut(s)	67, 112, 334, 433
HpyAV	CCTTC	2 cut(s)	100, 740
HpyCH4III	ACNGT	5 cut(s)	13, 61, 364, 409, 716
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	454, 635, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	303, 507
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	707
Hsp92II	CATG	3 cut(s)	41, 215, 652
HspAI	GCGC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	123, 181, 379
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	111, 210
LweI	GCATC	1 cut(s)	644
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	13, 145
MalI	GATC	3 cut(s)	125, 183, 381
MboI	GATC	3 cut(s)	123, 181, 379
MboII	GAAGA	3 cut(s)	386, 673, 755
MluCI	AATT	4 cut(s)	195, 253, 665, 686
MlyI	GAGTC	4 cut(s)	530, 548, 563, 622
MmeI	TCCRAC	1 cut(s)	522
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	2 cut(s)	141, 805
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	7 cut(s)	18, 105, 133, 439, 482, 494, 530
MspR9I	CCNGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	105
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	3 cut(s)	123, 181, 379
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	41, 215, 652
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	8 cut(s)	29, 129, 166, 418, 503, 572, 588, 641
Pfl23II	CGTACG	1 cut(s)	612
PkrI	GCNGC	3 cut(s)	101, 225, 427
PleI	GAGTC	4 cut(s)	529, 547, 562, 622
PpsI	GAGTC	4 cut(s)	529, 547, 562, 622
PscI	ACATGT	1 cut(s)	211
PspLI	CGTACG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	486
RsaI	GTAC	4 cut(s)	117, 394, 614, 675
RsaNI	GTAC	4 cut(s)	116, 393, 613, 674
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	141, 805
SatI	GCNGC	3 cut(s)	100, 224, 426
Sau3AI	GATC	3 cut(s)	123, 181, 379
ScaI	AGTACT	1 cut(s)	675
SchI	GAGTC	4 cut(s)	530, 548, 563, 622
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	644
SgrAI	CRCCGGYG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	195, 253, 665, 686
SsiI	CCGC	5 cut(s)	35, 226, 236, 244, 426
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	5 cut(s)	13, 61, 364, 409, 716
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	186, 447, 477, 591
TasI	AATT	4 cut(s)	195, 253, 665, 686
TatI	WGTACW	2 cut(s)	392, 673
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	8 cut(s)	29, 129, 166, 418, 503, 572, 588, 641
Tru1I	TTAA	2 cut(s)	141, 805
Tru9I	TTAA	2 cut(s)	141, 805
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	99, 223
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	637
TspGWI	ACGGA	1 cut(s)	578
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	333, 432
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.