Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

4676807 .. 4678001

Gene Structure 1195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACCACTTCCGGTAACGGAAGCCGTGAATCTCCGGATGAGAGACGCAATATTTCCACCGTAGTTTACCAAGACCATATAAACCGATCCTTCACAAGCAGCGCCGGCGTGGACGTACTTCCGATCAGATTCCGGCTCTTTAAGGTAACTGCTAACTATAATCCGATTCTCCACGATTATAATCTCGAAACTCCAATTCCCATATCTACACATGTATATTTGCTGCGGTTCTCGGTGGAGTGGCGGAGCTGGAATTCAAAGATAACGATGGAGAGGTTGGCTAGGTATCAAAGGACGATTGCTAAGTGTGGTTGGCAGATGGATAAGTTAGTAGACAAGCTGGCAAGGTATCTTTCTGATACCGTGGGTGTTGAAGAGGATCAGCACCCTTTTATTATTCTGAAAACGGTGGAGATGATTCAAGGCGCCGTCCACGACCGGGTTATAGATGTGCAGATGTCGGACATCACATTTATCGAACCGGAACCTGAACCGGAGGAGGAATCTGAGCTGGAGGAGGAGTCTGAACCGGAGGAAGAGTCAGAACAAGAGGAGGAGTCTGAAACGGAGGAGGATTACAGGAGGGATTCGAGGATTTGGACGACACATCGTACGGGGACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

209

Amino Acids

24.37

Weight (kDa)

4.68

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	2 cut(s)	226, 244
AclWI	GGATC	2 cut(s)	81, 387
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	2 cut(s)	117, 613
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	258, 374, 422
AluBI	AGCT	3 cut(s)	249, 340, 511
AluI	AGCT	3 cut(s)	249, 340, 511
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	81, 387
Aor13HI	TCCGGA	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	99, 223
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	104, 428
AsuC2I	CCSGG	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	111, 210
BccI	CCATC	2 cut(s)	262, 313
BceAI	ACGGC	2 cut(s)	9, 413
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	282
BfoI	RGCGCY	2 cut(s)	105, 429
BisI	GCNGC	2 cut(s)	100, 224
BlsI	GCNGC	2 cut(s)	101, 225
Bme1390I	CCNGG	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	427, 486
BmrFI	CCNGG	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	5 cut(s)	11, 34, 481, 493, 529
BsaXI	ACNNNNNCTCC	4 cut(s)	506, 524, 536, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	498
BseRI	GAGGAG	6 cut(s)	512, 530, 533, 566, 569, 584
BseXI	GCAGC	2 cut(s)	111, 210
BsgI	GTGCAG	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	8 cut(s)	12, 35, 105, 133, 439, 482, 494, 530
BsiWI	CGTACG	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	86, 123, 379
BspACI	CCGC	2 cut(s)	226, 244
BspCNI	CTCAG	1 cut(s)	499
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	427, 486
BspPI	GGATC	2 cut(s)	81, 387
BspT107I	GGYRCC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	86, 123, 379
BssNI	GRCGYC	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	61, 364, 409
Bst6I	CTCTTC	2 cut(s)	369, 531
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	106, 342
BstDEI	CTNAG	2 cut(s)	303, 507
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	2 cut(s)	105, 429
BstHHI	GCGC	2 cut(s)	104, 428
BstKTI	GATC	3 cut(s)	89, 126, 382
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	86, 123, 379
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	111, 210
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	106, 342
CfoI	GCGC	2 cut(s)	104, 428
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	116, 612
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	6 cut(s)	24, 136, 249, 281, 340, 511
CviKI_1	RGCY	6 cut(s)	24, 136, 249, 281, 340, 511
CviQI	GTAC	2 cut(s)	116, 612
DdeI	CTNAG	2 cut(s)	303, 507
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	3 cut(s)	88, 125, 381
DpnII	GATC	3 cut(s)	86, 123, 379
Eam1104I	CTCTTC	2 cut(s)	369, 531
EarI	CTCTTC	2 cut(s)	369, 531
EciI	GGCGGA	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	253
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	1 cut(s)	215
FaiI	YATR	8 cut(s)	78, 80, 159, 180, 203, 213, 217, 446
FatI	CATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	100, 224
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	100, 224
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	2 cut(s)	103, 427
GluI	GCNGC	2 cut(s)	100, 224
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	2 cut(s)	105, 429
HapII	CCGG	8 cut(s)	12, 35, 105, 133, 439, 482, 494, 530
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	2 cut(s)	104, 428
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	2 cut(s)	102, 426
HinP1I	GCGC	2 cut(s)	102, 426
HinfI	GANTC	9 cut(s)	29, 129, 166, 418, 503, 521, 539, 557, 587
HpaII	CCGG	8 cut(s)	12, 35, 105, 133, 439, 482, 494, 530
Hpy166II	GTNNAC	4 cut(s)	67, 112, 334, 433
Hpy188III	TCNNGA	2 cut(s)	35, 185
Hpy8I	GTNNAC	4 cut(s)	67, 112, 334, 433
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	3 cut(s)	61, 364, 409
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	303, 507
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	2 cut(s)	102, 426
KasI	GGCGCC	1 cut(s)	425
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	86, 123, 379
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	111, 210
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	14, 145
MalI	GATC	3 cut(s)	88, 125, 381
MboI	GATC	3 cut(s)	86, 123, 379
MboII	GAAGA	2 cut(s)	386, 548
MluCI	AATT	2 cut(s)	195, 253
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	3 cut(s)	530, 548, 566
MmeI	TCCRAC	1 cut(s)	441
MreI	CGCCGGCG	1 cut(s)	104
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	141
MspI	CCGG	8 cut(s)	12, 35, 105, 133, 439, 482, 494, 530
MspR9I	CCNGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	105
NaeI	GCCGGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	426
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	3 cut(s)	86, 123, 379
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	427, 486
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	6 cut(s)	29, 129, 166, 418, 503, 587
Pfl23II	CGTACG	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	101, 225
PleI	GAGTC	3 cut(s)	529, 547, 565
PluTI	GGCGCC	1 cut(s)	429
PpsI	GAGTC	3 cut(s)	529, 547, 565
PscI	ACATGT	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	427, 486
RsaI	GTAC	2 cut(s)	117, 613
RsaNI	GTAC	2 cut(s)	116, 612
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	100, 224
Sau3AI	GATC	3 cut(s)	86, 123, 379
SchI	GAGTC	3 cut(s)	530, 548, 566
ScrFI	CCNGG	1 cut(s)	440
SetI	ASST	9 cut(s)	117, 147, 251, 278, 287, 342, 350, 490, 513
SfoI	GGCGCC	1 cut(s)	427
SgrAI	CRCCGGYG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	195, 253
SsiI	CCGC	2 cut(s)	226, 244
SspDI	GGCGCC	1 cut(s)	425
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	3 cut(s)	61, 364, 409
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	186, 477, 590
TasI	AATT	2 cut(s)	195, 253
TfiI	GAWTC	6 cut(s)	29, 129, 166, 418, 503, 587
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	2 cut(s)	99, 223
TspGWI	ACGGA	2 cut(s)	33, 581
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.