RLG00000025652

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000672
Physical Location & Seq
Reverse (-)
47378920 .. 47379643
724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025652

Sequence Viewer

Length: 441 bp
ATGGACATACTTCCGATCAGATTCAAACTGGCCCAGGTAATTGTAAAGTACAATCCAAGTATCCAAGGTTATGATTTTGAACCTCCAATTATATTATCTAGACATATTCTTAAGCTGCGGTTCTCGAGGGAGAGGGTGAGTGGGAGTGGGAGTGCAGAGATAGCGATGAAAATGGTCATAGCTAGGTCTCCAACGGAAATGGACAAGTTACAGATGAAGCTGGCTAGGTATCTGAGCAGCCCAATGGGTGTTCCCGAAGATAAGCACCCGTTTATTATTGTACATATATTGGATATGCTTGAAGAAGCCGTCCCAGATAAAATTATCTATGTGCACTTGATCACTATTAGAGATACGAAGGAATCCATGCACTTAAACGTGGAAGACAATTACTACATGGAAGCCAGTAGCAATGCAGCTATGCTTTCTCCTCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

147

Amino Acids

16.74

Weight (kDa)

6.97

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 118
AfaI GTAC 2 cut(s) 50, 282
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 3 cut(s) 25, 80, 302
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 4 cut(s) 115, 182, 220, 419
AluI AGCT 4 cut(s) 115, 182, 220, 419
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 192
Alw44I GTGCAC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 1 cut(s) 30
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 115, 237, 416
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 3 cut(s) 102, 249, 428
BceAI ACGGC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 71
BclI TGATCA 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 99, 183, 225
BfrI CTTAAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 3 cut(s) 116, 238, 417
BlsI GCNGC 3 cut(s) 117, 239, 418
Bme1390I CCNGG 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 33, 64
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 2 cut(s) 33, 405
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 33, 64
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 33, 405
BseRI GAGGAG 1 cut(s) 420
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 3 cut(s) 102, 249, 428
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 336
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 2 cut(s) 15, 339
BspACI CCGC 1 cut(s) 118
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 418
BsrGI TGTACA 1 cut(s) 280
BsrI ACTGG 2 cut(s) 33, 405
BssECI CCNNGG 2 cut(s) 33, 64
BssMI GATC 2 cut(s) 15, 339
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 35
BstAFI CTTAAG 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 233, 432
BstKTI GATC 2 cut(s) 18, 342
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 15, 339
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 102, 249, 428
BstV2I GAAGAC 1 cut(s) 390
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 49, 281
CviAII CATG 2 cut(s) 367, 397
CviJI RGCY 9 cut(s) 32, 115, 182, 220, 224, 240, 308, 404, 419
CviKI_1 RGCY 9 cut(s) 32, 115, 182, 220, 224, 240, 308, 404, 419
CviQI GTAC 2 cut(s) 49, 281
DdeI CTNAG 2 cut(s) 233, 432
DpnI GATC 2 cut(s) 17, 341
DpnII GATC 2 cut(s) 15, 339
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 2 cut(s) 370, 400
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 366, 396
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 116, 238, 417
Fsp4HI GCNGC 3 cut(s) 116, 238, 417
FspBI CTAG 3 cut(s) 99, 183, 225
GluI GCNGC 3 cut(s) 116, 238, 417
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 2 cut(s) 370, 400
HinfI GANTC 2 cut(s) 21, 362
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 4 cut(s) 15, 20, 234, 435
Hpy188III TCNNGA 3 cut(s) 99, 124, 254
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 155, 334, 370, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 233, 432
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 2 cut(s) 370, 400
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 2 cut(s) 15, 339
LpnPI CCDG 6 cut(s) 14, 20, 47, 206, 327, 418
Lsp1109I GCAGC 3 cut(s) 102, 249, 428
MaeI CTAG 3 cut(s) 99, 183, 225
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 207
MalI GATC 2 cut(s) 17, 341
MboI GATC 2 cut(s) 15, 339
MboII GAAGA 3 cut(s) 269, 314, 395
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 4 cut(s) 39, 87, 321, 388
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 4 cut(s) 93, 120, 126, 441
MseI TTAA 2 cut(s) 111, 374
MspCI CTTAAG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 2 cut(s) 15, 339
NlaIII CATG 2 cut(s) 370, 400
PaeR7I CTCGAG 1 cut(s) 124
PfeI GAWTC 2 cut(s) 21, 362
PkrI GCNGC 3 cut(s) 117, 239, 418
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspPI GGNCC 1 cut(s) 31
RsaI GTAC 2 cut(s) 50, 282
RsaNI GTAC 2 cut(s) 49, 281
SaqAI TTAA 2 cut(s) 111, 374
SatI GCNGC 3 cut(s) 116, 238, 417
Sau3AI GATC 2 cut(s) 15, 339
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 110, 124
SmoI CTYRAG 2 cut(s) 110, 124
Sse9I AATT 4 cut(s) 39, 87, 321, 388
SsiI CCGC 1 cut(s) 118
SspMI CTAG 3 cut(s) 99, 183, 225
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 125
TasI AATT 4 cut(s) 39, 87, 321, 388
TatI WGTACW 2 cut(s) 48, 280
TfiI GAWTC 2 cut(s) 21, 362
Tru1I TTAA 2 cut(s) 111, 374
Tru9I TTAA 2 cut(s) 111, 374
TseI GCWGC 3 cut(s) 115, 237, 416
TspDTI ATGAA 2 cut(s) 182, 230
TspGWI ACGGA 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 110
VneI GTGCAC 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 124
XspI CTAG 3 cut(s) 99, 183, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.