Rmu_sc0000295.1_g000021

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000295.1
OG0000672
Physical Location & Seq
Forward (+)
118159 .. 122381
4223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000295.1_g000021.1.cds

Sequence Viewer

Length: 1053 bp
atggccgccgctgaccaagaatccagtgttgaagcaaggatgaacagcatcaccgaaacacgacagtttgcagtccaagttcatcacaatagagcaaactactaccgcagcagttccggcgtggacatacttccgatcagattcaaatggggcaaggtaactgtaaactacaatccaagtatccaaggttatgattgtgaacctccagatattatatccagacgtattcttaagctgcggttctcgagggagagggcgagtgggagtgcaaagataacggagaggaggttggccaagtacaaaagggtcatagctaggtctccgacggaaatggacaagttacagatgaagctggctaggtttctgcgcagccctgtgggtattcccgaagataagcacccgtttattattgtacatatattggatatgattgaattagccgacccagataaaattatcgatgtgcacttgatggacatgactgttagagctacgggggaattcgcgcacttaaacgtggaagacaattactacaggctcatgcttattccggcatccgaagcattcattcaaggtttgcagcaagtgagactcgttgagcatgacagtttggaaatgcttggtctggagacatcgtgcgctgtttgtctggatgcctttgcggacacaaaagagatcaccatcgctcgcttgccctgcttacattattatcatcatcattgcattgtcgagtggctcaggatcaatcacgtctgccccatttgccggcaccctaatgccccgattagatgcccgggtaacagaggacggactgtattgtggccactgagcttgcgaagcccctcactgcttactgcatgcaatgacagaaacgagtttggagtagaatctcagccaaaagaggctcaggaaagtgtggcttttagattcttcaacaagaatcaagttgaccacattaagggtgatcagaacacttggttttctaataaagaagccaagctgctgaaattgcagaaagtcacccctctatttggaactttgtttcttccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

350

Amino Acids

40.19

Weight (kDa)

8.79

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 768
AccII CGCG 1 cut(s) 506
AciI CCGC 5 cut(s) 6, 9, 106, 238, 662
AclWI GGATC 1 cut(s) 749
AcoI YGGCCR 3 cut(s) 3, 291, 821
AcsI RAATTY 1 cut(s) 500
AfaI GTAC 2 cut(s) 299, 414
AfiI CCNNNNNNNGG 3 cut(s) 765, 958, 1031
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 5 cut(s) 32, 145, 434, 572, 934
AjiI CACGTC 1 cut(s) 751
AluBI AGCT 6 cut(s) 235, 314, 352, 491, 831, 1000
AluI AGCT 6 cut(s) 235, 314, 352, 491, 831, 1000
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 3 cut(s) 324, 583, 623
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 1 cut(s) 749
Ama87I CYCGRG 2 cut(s) 244, 793
AoxI GGCC 3 cut(s) 3, 291, 821
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 5 cut(s) 108, 235, 369, 580, 1000
ApoI RAATTY 1 cut(s) 500
AspLEI GCGC 3 cut(s) 369, 508, 641
AsuC2I CCSGG 2 cut(s) 794, 795
AsuHPI GGTGA 4 cut(s) 43, 670, 974, 1012
AvaI CYCGRG 2 cut(s) 244, 793
BaeGI GKGCMC 1 cut(s) 468
BalI TGGCCA 2 cut(s) 293, 823
BanI GGYRCC 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 5 cut(s) 120, 222, 381, 592, 987
BccI CCATC 2 cut(s) 466, 689
BciVI GTATCC 1 cut(s) 191
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 2 cut(s) 794, 795
BcoDI GTCTC 3 cut(s) 324, 583, 623
BfaI CTAG 2 cut(s) 315, 357
BfmI CTRYAG 1 cut(s) 532
BfrI CTTAAG 1 cut(s) 230
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 7 cut(s) 6, 9, 109, 236, 370, 581, 1001
BlsI GCNGC 7 cut(s) 7, 10, 110, 237, 371, 582, 1002
Bme1390I CCNGG 2 cut(s) 794, 795
BmeT110I CYCGRG 2 cut(s) 244, 793
BmgBI CACGTC 1 cut(s) 751
BmiI GGNNCC 1 cut(s) 770
BmrFI CCNGG 2 cut(s) 794, 795
BmsI GCATC 4 cut(s) 57, 563, 643, 779
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 2 cut(s) 189, 647
Bpu10I CCTNAGC 2 cut(s) 737, 906
BpuMI CCSGG 2 cut(s) 794, 795
Bsa29I ATCGAT 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 680
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 184, 793
BsaXI ACNNNNNCTCC 4 cut(s) 272, 302, 620, 650
Bsc4I CCNNNNNNNGG 3 cut(s) 765, 958, 1031
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 2 cut(s) 718, 868
Bse8I GATNNNNATC 1 cut(s) 680
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 2 cut(s) 184, 793
BseGI GGATG 3 cut(s) 45, 554, 658
BseJI GATNNNNATC 1 cut(s) 680
BseLI CCNNNNNNNGG 3 cut(s) 765, 958, 1031
BseMI GCAATG 2 cut(s) 718, 868
BseMII CTCAG 4 cut(s) 751, 818, 905, 920
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 5 cut(s) 120, 222, 381, 592, 987
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 3 cut(s) 5, 293, 823
BshNI GGYRCC 1 cut(s) 768
BshVI ATCGAT 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 2 cut(s) 244, 793
BsiSI CCGG 4 cut(s) 117, 551, 766, 794
BslI CCNNNNNNNGG 3 cut(s) 765, 958, 1031
BsmAI GTCTC 3 cut(s) 324, 583, 623
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 5, 293, 823
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 2 cut(s) 244, 793
Bsp1286I GDGCHC 1 cut(s) 468
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 4 cut(s) 135, 675, 741, 964
BspACI CCGC 5 cut(s) 6, 9, 106, 238, 662
BspANI GGCC 3 cut(s) 5, 293, 823
BspCNI CTCAG 4 cut(s) 750, 819, 904, 919
BspDI ATCGAT 1 cut(s) 459
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 770
BspPI GGATC 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 768
BspTI CTTAAG 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 718, 868
BsrFI RCCGGY 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 2 cut(s) 184, 793
BssMI GATC 4 cut(s) 135, 675, 741, 964
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 5 cut(s) 66, 163, 484, 608, 814
BstAFI CTTAAG 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 412
BstC8I GCNNGC 6 cut(s) 354, 688, 692, 767, 833, 859
BstDEI CTNAG 4 cut(s) 737, 827, 891, 906
BstF5I GGATG 3 cut(s) 45, 554, 658
BstFNI CGCG 1 cut(s) 506
BstHHI GCGC 3 cut(s) 369, 508, 641
BstKTI GATC 4 cut(s) 138, 678, 744, 967
BstMAI GTCTC 3 cut(s) 324, 583, 623
BstMBI GATC 4 cut(s) 135, 675, 741, 964
BstMWI GCNNNNNNNGC 6 cut(s) 117, 560, 696, 762, 837, 1009
BstNSI RCATGY 1 cut(s) 861
BstSCI CCNGG 2 cut(s) 792, 793
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 1 cut(s) 468
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 5 cut(s) 120, 222, 381, 592, 987
BstV2I GAAGAC 1 cut(s) 528
Bsu15I ATCGAT 1 cut(s) 459
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 3 cut(s) 5, 293, 823
BsuTUI ATCGAT 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 667
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 3 cut(s) 45, 554, 658
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 3 cut(s) 31, 824, 845
Cac8I GCNNGC 6 cut(s) 354, 688, 692, 767, 833, 859
CfoI GCGC 3 cut(s) 369, 508, 641
Cfr10I RCCGGY 1 cut(s) 765
Cfr9I CCCGGG 1 cut(s) 793
ClaI ATCGAT 1 cut(s) 459
Csp6I GTAC 2 cut(s) 298, 413
CspCI CAANNNNNGTGG 2 cut(s) 813, 848
CviAII CATG 5 cut(s) 478, 541, 602, 858, 1050
CviQI GTAC 2 cut(s) 298, 413
DdeI CTNAG 4 cut(s) 737, 827, 891, 906
DpnI GATC 4 cut(s) 137, 677, 743, 966
DpnII GATC 4 cut(s) 135, 675, 741, 964
EaeI YGGCCR 3 cut(s) 3, 291, 821
Eco130I CCWWGG 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 244, 793
EcoRI GAATTC 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 5 cut(s) 481, 544, 605, 861, 1053
FalI AAGNNNNNCTT 2 cut(s) 904, 936
FatI CATG 5 cut(s) 477, 540, 601, 857, 1049
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 7 cut(s) 6, 9, 109, 236, 370, 581, 1001
FokI GGATG 3 cut(s) 52, 541, 665
Fsp4HI GCNGC 7 cut(s) 6, 9, 109, 236, 370, 581, 1001
FspBI CTAG 2 cut(s) 315, 357
FspI TGCGCA 1 cut(s) 368
GlaI GCGC 3 cut(s) 368, 507, 640
GluI GCNGC 7 cut(s) 6, 9, 109, 236, 370, 581, 1001
GsuI CTGGAG 2 cut(s) 189, 647
HaeIII GGCC 3 cut(s) 5, 293, 823
HapII CCGG 4 cut(s) 117, 551, 766, 794
HhaI GCGC 3 cut(s) 369, 508, 641
Hin1II CATG 5 cut(s) 481, 544, 605, 861, 1053
Hin6I GCGC 3 cut(s) 367, 506, 639
HinP1I GCGC 3 cut(s) 367, 506, 639
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HinfI GANTC 6 cut(s) 20, 141, 591, 887, 927, 940
HpaII CCGG 4 cut(s) 117, 551, 766, 794
HphI GGTGA 4 cut(s) 43, 670, 974, 1012
Hpy166II GTNNAC 5 cut(s) 124, 166, 200, 466, 949
Hpy188I TCNGA 5 cut(s) 135, 140, 324, 559, 969
Hpy188III TCNNGA 8 cut(s) 206, 219, 244, 386, 626, 650, 739, 908
Hpy8I GTNNAC 5 cut(s) 124, 166, 200, 466, 949
Hpy99I CGWCG 1 cut(s) 328
HpyCH4III ACNGT 5 cut(s) 66, 163, 484, 608, 814
HpyCH4IV ACGT 3 cut(s) 223, 516, 750
HpyCH4V TGCA 8 cut(s) 71, 269, 466, 580, 723, 857, 861, 1012
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 560, 696, 762, 837, 1009
HpyF3I CTNAG 4 cut(s) 737, 827, 891, 906
HpySE526I ACGT 3 cut(s) 223, 516, 750
Hsp92II CATG 5 cut(s) 481, 544, 605, 861, 1053
HspAI GCGC 3 cut(s) 367, 506, 639
KroI GCCGGC 1 cut(s) 765
KroNI GCCGGC 1 cut(s) 767
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 4 cut(s) 135, 675, 741, 964
Lsp1109I GCAGC 5 cut(s) 120, 222, 381, 592, 987
LweI GCATC 4 cut(s) 57, 563, 643, 779
MaeI CTAG 2 cut(s) 315, 357
MaeII ACGT 3 cut(s) 223, 516, 750
MaeIII GTNAC 4 cut(s) 157, 339, 797, 1018
MalI GATC 4 cut(s) 137, 677, 743, 966
MboI GATC 4 cut(s) 135, 675, 741, 964
MboII GAAGA 4 cut(s) 401, 533, 922, 1037
MhlI GDGCHC 1 cut(s) 468
MlsI TGGCCA 2 cut(s) 293, 823
MluCI AATT 5 cut(s) 434, 453, 500, 526, 1007
MluNI TGGCCA 2 cut(s) 293, 823
MlyI GAGTC 1 cut(s) 585
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 9 cut(s) 213, 240, 246, 276, 279, 797, 853, 895, 1035
Mox20I TGGCCA 2 cut(s) 293, 823
MroNI GCCGGC 1 cut(s) 765
MscI TGGCCA 2 cut(s) 293, 823
MseI TTAA 3 cut(s) 231, 512, 957
MslI CAYNNNNRTG 1 cut(s) 774
Msp20I TGGCCA 2 cut(s) 293, 823
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 4 cut(s) 117, 551, 766, 794
MspR9I CCNGG 2 cut(s) 794, 795
Mva1269I GAATGC 1 cut(s) 563
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 6 cut(s) 117, 560, 696, 762, 837, 1009
NaeI GCCGGC 1 cut(s) 767
NciI CCSGG 2 cut(s) 794, 795
NdeII GATC 4 cut(s) 135, 675, 741, 964
NgoMIV GCCGGC 1 cut(s) 765
NlaIII CATG 5 cut(s) 481, 544, 605, 861, 1053
NlaIV GGNNCC 1 cut(s) 770
NmuCI GTSAC 1 cut(s) 1018
NsbI TGCGCA 1 cut(s) 368
NspI RCATGY 1 cut(s) 861
PaeI GCATGC 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 244
PctI GAATGC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 767
PfeI GAWTC 5 cut(s) 20, 141, 887, 927, 940
PkrI GCNGC 7 cut(s) 7, 10, 110, 237, 371, 582, 1002
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 770
RsaI GTAC 2 cut(s) 299, 414
RsaNI GTAC 2 cut(s) 298, 413
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 3 cut(s) 231, 512, 957
SatI GCNGC 7 cut(s) 6, 9, 109, 236, 370, 581, 1001
Sau3AI GATC 4 cut(s) 135, 675, 741, 964
SchI GAGTC 1 cut(s) 585
ScrFI CCNGG 2 cut(s) 794, 795
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 4 cut(s) 57, 563, 643, 779
SfcI CTRYAG 1 cut(s) 532
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmaI CCCGGG 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 2 cut(s) 230, 244
SmoI CTYRAG 2 cut(s) 230, 244
SphI GCATGC 1 cut(s) 861
Sse9I AATT 5 cut(s) 434, 453, 500, 526, 1007
SsiI CCGC 5 cut(s) 6, 9, 106, 238, 662
SspMI CTAG 2 cut(s) 315, 357
StyD4I CCNGG 2 cut(s) 792, 793
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 5 cut(s) 66, 163, 484, 608, 814
TaiI ACGT 3 cut(s) 226, 519, 753
TaqI TCGA 3 cut(s) 245, 459, 729
TasI AATT 5 cut(s) 434, 453, 500, 526, 1007
TatI WGTACW 2 cut(s) 297, 412
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 5 cut(s) 20, 141, 887, 927, 940
Tru1I TTAA 3 cut(s) 231, 512, 957
Tru9I TTAA 3 cut(s) 231, 512, 957
TscAI CASTG 3 cut(s) 31, 831, 852
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 5 cut(s) 108, 235, 369, 580, 1000
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 4 cut(s) 56, 71, 362, 556
TspGWI ACGGA 3 cut(s) 293, 341, 823
TspMI CCCGGG 1 cut(s) 793
TspRI CASTG 3 cut(s) 31, 831, 852
Vha464I CTTAAG 1 cut(s) 230
VneI GTGCAC 1 cut(s) 464
XapI RAATTY 1 cut(s) 500
XceI RCATGY 1 cut(s) 861
XhoI CTCGAG 1 cut(s) 244
XmaI CCCGGG 1 cut(s) 793
XspI CTAG 2 cut(s) 315, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.