Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

12424696 .. 12429833

Gene Structure 5138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20841.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCTCGTTTTCATGCTAAACATGCCCACTTCAAAGCCGATATTATGGCAAATTTGATGATGCGTACGTTAACTTTAACCCTCGACCGGAGGAAAGTAGCGATTGTTAGTGCTCCTTGGAACGGTGATGATGTAGCCGCCATGGACGAGGGAGTCCGGGACCATGTCCTGCAATTGAAGAGACAAACAATGGAAGATCTATGGAAACGACCCAATAGCTTCGCCGAAGAAGCAGCCAAGAAATCAGACCATCACCAGTTCGCCGCCAAAATCTCAAGCGATCCTGCGAGTTCGCCGCCGATGCCCTCCAAGATAGCCGACGAGATCAAAACGGCCGCTCTTAAGCAAGCCGATCAGATCAAGGAGAGGGAGATAGATCGATCTTCCACATCCAACTTGTCTGCCCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.35

Weight (kDa)

8.96

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	338
AciI	CCGC	4 cut(s)	138, 264, 296, 336
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	87, 122
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	34, 178
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	137, 245
AvaII	GGWCC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	175
BfrI	CTTAAG	1 cut(s)	341
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	5 cut(s)	138, 234, 264, 296, 336
BlsI	GCNGC	5 cut(s)	139, 235, 265, 297, 337
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	2 cut(s)	51, 291
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	116, 141
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 122
Bse1I	ACTGG	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	116, 141
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	87, 122
BseNI	ACTGG	1 cut(s)	256
BseX3I	CGGCCG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	245
Bsh1285I	CGRYCG	2 cut(s)	88, 336
BshFI	GGCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	379
BsiEI	CGRYCG	2 cut(s)	88, 336
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	88, 157
BsiWI	CGTACG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	87, 122
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	4 cut(s)	138, 264, 296, 336
BspANI	GGCC	1 cut(s)	335
BspDI	ATCGAT	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	116, 141
BssMI	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
BssT1I	CCWWGG	2 cut(s)	116, 141
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	389
BstKTI	GATC	7 cut(s)	199, 283, 327, 355, 360, 379, 383
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
BstMCI	CGRYCG	2 cut(s)	88, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 230, 301
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BstZI	CGGCCG	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	4 cut(s)	14, 23, 142, 164
CviJI	RGCY	7 cut(s)	38, 137, 219, 236, 317, 335, 350
CviKI_1	RGCY	7 cut(s)	38, 137, 219, 236, 317, 335, 350
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	7 cut(s)	198, 282, 326, 354, 359, 378, 382
DpnII	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	333
EagI	CGGCCG	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	116, 141
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	116, 141
ErhI	CCWWGG	2 cut(s)	116, 141
FaeI	CATG	4 cut(s)	17, 26, 145, 167
FaiI	YATR	6 cut(s)	15, 24, 47, 143, 165, 202
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	4 cut(s)	13, 22, 141, 163
Fnu4HI	GCNGC	5 cut(s)	138, 234, 264, 296, 336
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	5 cut(s)	138, 234, 264, 296, 336
GluI	GCNGC	5 cut(s)	138, 234, 264, 296, 336
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	2 cut(s)	88, 157
Hin1II	CATG	4 cut(s)	17, 26, 145, 167
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	153
HpaI	GTTAAC	1 cut(s)	72
HpaII	CCGG	2 cut(s)	88, 157
HphI	GGTGA	2 cut(s)	137, 245
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	2 cut(s)	247, 357
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 230, 301
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	17, 26, 145, 167
KspAI	GTTAAC	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	5 cut(s)	101, 170, 182, 269, 297
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	2 cut(s)	51, 291
MaeII	ACGT	1 cut(s)	68
MalI	GATC	7 cut(s)	198, 282, 326, 354, 359, 378, 382
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
MboII	GAAGA	4 cut(s)	190, 206, 239, 375
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	2 cut(s)	52, 173
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	6 cut(s)	15, 84, 92, 142, 316, 360
MseI	TTAA	3 cut(s)	71, 77, 342
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	2 cut(s)	88, 157
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	23, 230, 301
NciI	CCSGG	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
NlaIII	CATG	4 cut(s)	17, 26, 145, 167
NlaIV	GGNNCC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	26
Pfl23II	CGTACG	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	139, 235, 265, 297, 337
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspLI	CGTACG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	196
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	71, 77, 342
SatI	GCNGC	5 cut(s)	138, 234, 264, 296, 336
Sau3AI	GATC	7 cut(s)	196, 280, 324, 352, 357, 376, 380
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	2 cut(s)	71, 221
SfaNI	GCATC	2 cut(s)	51, 291
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	274, 341
SmoI	CTYRAG	2 cut(s)	274, 341
Sse9I	AATT	2 cut(s)	52, 173
SsiI	CCGC	4 cut(s)	138, 264, 296, 336
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	116, 141
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	84, 379
TasI	AATT	2 cut(s)	52, 173
TauI	GCSGC	4 cut(s)	140, 266, 298, 338
Tru1I	TTAA	3 cut(s)	71, 77, 342
Tru9I	TTAA	3 cut(s)	71, 77, 342
TseI	GCWGC	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	164
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.