Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

21240400 .. 21244009

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGACGATCGATCACAAATGAAGAAGCTTTGAAGGGTACTTTGGTTGAAATTGACTTGCATATCTGCGAGCCATGGCAACTTCCTGAGGTGGCCAAGCTGAATGCCAATGAGTGGTACTTCTTCAGCTTCCGTGACCGTAAGTATGCGACGGGGTTCCGGACCAACCGTGCGACGTCAACTGGATACTGGAAAGCAACAGGGAAAGATCGGCTGGTGATGGAGCCAGGAACTGGGGATATCGTAGGGATGAGGAAGACTTTGGTGTTCTATCGGAACAGAGCTCCTAATGGAATCAAAACTGGTTGGATTATGCATGAGTTCCGACTGGAGACCCCACATATGCCTCCTAAGGAAGACTGGGTTCTGTGCAGAGTTTTCTACAAAGGCAAGGCAGCAGAGAACAGCACCAAACTCAACCCCCATGACTTTACGTTGGAGACCACACCATGCACTGTTCCTTTAAATTTAGTTCCACCTCCTCCAACTTATAACCAAACAATGCCTTGTGTGTACAACCAAAACCACAACCAAACCAACGCTTTCCTGAATCTCCTACAGCTTCCTCATCAGGAAAAATATACCAATTCCTCCGTCTCCGAATTAAACACGAAAAACGACGACGAATATGGGTTTCTATGGGACATGAATTTAGAAGAAGGCAGCTTCGACAACGGGGTGGCTCCAAATTTGGATGAGATTGGATTTCAGGTGGATGAGAACAGCATGGATTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

247

Amino Acids

28.27

Weight (kDa)

5.3

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	6 - 110	1.4e-30	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AatII	GACGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	2 cut(s)	114, 233
AccIII	TCCGGA	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	466, 649, 688
AcuI	CTGAAG	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	3 cut(s)	40, 119, 515
AfiI	CCNNNNNNNGG	2 cut(s)	114, 233
AgsI	TTSAA	2 cut(s)	34, 50
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	6 cut(s)	29, 100, 129, 284, 562, 666
AluI	AGCT	6 cut(s)	29, 100, 129, 284, 562, 666
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	3 cut(s)	326, 434, 601
AlwNI	CAGNNNCTG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	395, 663
ApoI	RAATTY	3 cut(s)	466, 649, 688
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	162
AxyI	CCTNAGG	2 cut(s)	87, 351
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BalI	TGGCCA	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	263, 363
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	407, 675
BccI	CCATC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	326, 434, 601
BfmI	CTRYAG	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	396, 664
BlsI	GCNGC	2 cut(s)	397, 665
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	158, 225, 684
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	2 cut(s)	243, 370
BmuI	ACTGGG	2 cut(s)	243, 370
BpiI	GAAGAC	2 cut(s)	263, 363
BpmI	CTGGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	2 cut(s)	326, 434
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 233
Bse1I	ACTGG	6 cut(s)	187, 194, 238, 307, 333, 365
Bse21I	CCTNAGG	2 cut(s)	87, 351
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	3 cut(s)	255, 700, 721
BseLI	CCNNNNNNNGG	2 cut(s)	114, 233
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	6 cut(s)	187, 194, 238, 307, 333, 365
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	407, 675
BsgI	GTGCAG	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	18, 656
BslI	CCNNNNNNNGG	2 cut(s)	114, 233
BsmAI	GTCTC	3 cut(s)	326, 434, 601
BsmBI	CGTCTC	1 cut(s)	601
BsmFI	GGGAC	2 cut(s)	18, 656
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	2 cut(s)	326, 434
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	8, 12, 208
Bsp19I	CCATGG	1 cut(s)	74
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	11
BspEI	TCCGGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	158, 225, 684
BspTNI	GGTCTC	2 cut(s)	326, 434
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	6 cut(s)	187, 194, 238, 307, 333, 365
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	3 cut(s)	8, 12, 208
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	140, 170, 457
BstACI	GRCGYC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	87, 351
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	3 cut(s)	255, 700, 721
BstKTI	GATC	3 cut(s)	11, 15, 211
BstMAI	GTCTC	3 cut(s)	326, 434, 601
BstMBI	GATC	3 cut(s)	8, 12, 208
BstMCI	CGRYCG	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	407, 675
BstV2I	GAAGAC	2 cut(s)	263, 363
Bsu15I	ATCGAT	1 cut(s)	11
Bsu36I	CCTNAGG	2 cut(s)	87, 351
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	255, 700, 721
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	71
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	39, 118, 514
CviAII	CATG	6 cut(s)	75, 317, 425, 450, 646, 727
CviQI	GTAC	3 cut(s)	39, 118, 514
DdeI	CTNAG	2 cut(s)	87, 351
DpnI	GATC	3 cut(s)	10, 14, 210
DpnII	GATC	3 cut(s)	8, 12, 208
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	286
Eco31I	GGTCTC	2 cut(s)	326, 434
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	109
Eco81I	CCTNAGG	2 cut(s)	87, 351
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	601
FaeI	CATG	6 cut(s)	78, 320, 428, 453, 649, 730
FaqI	GGGAC	2 cut(s)	18, 656
FatI	CATG	6 cut(s)	74, 316, 424, 449, 645, 726
FauNDI	CATATG	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	396, 664
FokI	GGATG	3 cut(s)	262, 707, 728
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	396, 664
GluI	GCNGC	2 cut(s)	396, 664
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	6 cut(s)	78, 320, 428, 453, 649, 730
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	2 cut(s)	294, 550
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	180, 514
Hpy188I	TCNGA	3 cut(s)	276, 326, 601
Hpy188III	TCNNGA	4 cut(s)	86, 160, 547, 572
Hpy8I	GTNNAC	2 cut(s)	180, 514
Hpy99I	CGWCG	4 cut(s)	154, 178, 623, 626
HpyAV	CCTTC	2 cut(s)	28, 653
HpyCH4III	ACNGT	3 cut(s)	140, 170, 457
HpyCH4IV	ACGT	2 cut(s)	176, 434
HpyCH4V	TGCA	4 cut(s)	61, 316, 372, 453
HpyF3I	CTNAG	2 cut(s)	87, 351
HpySE526I	ACGT	2 cut(s)	176, 434
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	6 cut(s)	78, 320, 428, 453, 649, 730
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	8, 12, 208
LmnI	GCTCC	3 cut(s)	223, 289, 688
Lsp1109I	GCAGC	2 cut(s)	407, 675
MaeII	ACGT	2 cut(s)	176, 434
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	10, 14, 210
MboI	GATC	3 cut(s)	8, 12, 208
MboII	GAAGA	5 cut(s)	35, 115, 268, 368, 668
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	6 cut(s)	51, 466, 586, 602, 649, 688
MluNI	TGGCCA	1 cut(s)	95
MmeI	TCCRAC	4 cut(s)	287, 349, 417, 509
MnlI	CCTC	7 cut(s)	82, 246, 357, 489, 492, 576, 601
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	2 cut(s)	464, 605
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	3 cut(s)	8, 12, 208
NlaIII	CATG	6 cut(s)	78, 320, 428, 453, 649, 730
NlaIV	GGNNCC	3 cut(s)	158, 225, 684
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	318
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	294, 550
PflMI	CCANNNNNTGG	2 cut(s)	114, 233
PkrI	GCNGC	2 cut(s)	397, 665
Ple19I	CGATCG	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	158, 225, 684
PspPI	GGNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	233
PvuI	CGATCG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	40, 119, 515
RsaNI	GTAC	3 cut(s)	39, 118, 514
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	464, 605
SatI	GCNGC	2 cut(s)	396, 664
Sau3AI	GATC	3 cut(s)	8, 12, 208
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	6 cut(s)	51, 466, 586, 602, 649, 688
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	3 cut(s)	140, 170, 457
TaiI	ACGT	2 cut(s)	179, 437
TaqI	TCGA	2 cut(s)	11, 669
TasI	AATT	6 cut(s)	51, 466, 586, 602, 649, 688
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	2 cut(s)	294, 550
Tru1I	TTAA	2 cut(s)	464, 605
Tru9I	TTAA	2 cut(s)	464, 605
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	395, 663
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	36, 662
TspGWI	ACGGA	2 cut(s)	122, 583
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	2 cut(s)	114, 233
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	3 cut(s)	466, 649, 688
ZraI	GACGTC	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.