Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Reverse (-)

26316484 .. 26321372

Gene Structure 4889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGGAGGTGATGATTATGGCCAACGCTCAACCGGGTGTCTCCAATTTTCAGAGGAATGGGGTTTTTGCTACGAATTGTTGCCCAAAGTCGCTTCCTTTATCTGGGTTTTCGATTTTCCGGAGACCAATTTTCGGTATTGGATTAAATGAGAAGAATGTGAAGAGGAATCGGGTTTTCGGTATTAAGTTCGTGAATACCAGAACTGTTATTAGTGCTGTGTCGAAGGAAGGGTCTGAAATTTTAGAGAAGGAATTCGAATTTAAGCCGTCATTTGATCAGTACTTGAAGGTTATGGGGACTGTTAGGCTTAGAAGTGATAGAGATAAGCAGCAGAGATCGAAAGAAGAGAATCCGAAGCATAGTGTGCGGAGTAGAGGTGTTTCCAGGAGACTGTTGTCTGAGGGTAGTGAAGAGGATGCAAAACTGGGGGAGCCTGAGGGGAATTTGAATCGAGAGAAGGCGTCAAAAGTTGAGAATCGGTATGAGTTGCTTGGAAATAGAAATGGAAGCACGCATGAACGTCAACGAGTTAAGGGATTTAAGGATGAATACGATAGCAGACAGAACAACAAGGATGAAAAGGATAAGAAGATGATAAGGGGAGAGACAAGAGATGGAAGATGGTCAAAATATACTGGTAGGGTAGAACCAGGATTGGACTTCAAAGGTAAAAGTACAACAGTACGAAATGCAAAAGATGGCCCGGGAGTTACTGGTCGGCTAGAAGAGGAAGTAGACTTCAAAGGTAAAAGTACAATGGCACGAAATGCAAGAGATGGCCCGAGAGTTTACAAGTCAAGGGATAAAGCCGTTGAAAGAGGGAAGTTTGGTGTTAGAAATGAAGATGGAGTTGAAAGCAACCACAGCAATGCTGATAAAGCCACTGATAGAGGTTTTGTTCCAAGAAGTGTAACTAAGAGTGGTAGGGATTTCCCTAAAAGATTTAATGAAAAAAACTTGGAGGTGGAAAGAGCAGCATTTCGGAATTTTGATGAATTCGGTGATATTATGGACAAGCCACGAGTTTCACAAATGGAAATGGAGCAGAGAATCCAGAAGCTAGCAAAGTGGCTGAATGGTGCAGACATTGACATGCCTGAGTGGATGTTTTCAAAGATGATGCGAAGTGCACAAATCAGATTCACAGATCATTCAATATTGAGAGTTATCCAGCTATTGGGAAAACTAGGAAACTGGAGACGGGTGCTACAAGTCATTGAGTGGCTTCAAATGCGTGAACGTTTCAAATCCCACAAGCTCAGATACATATACACAACTGCACTTGATGTACTTGGAAACGCAAGGAGGCCTGTGGAAGCACTTAATGTATTTCATGCAATGCTGGAACAAATGTCCTCGTATCCCGACTTGGTAGCTTATCATTCTATTGCTGTAACTCTTGGACAAGCAGGACATATGAGGGAACTTTTTGATGTGATTGATACTATGCGATCTCCTCCTAAGAAGAAGTTCAAAACCGGGGCACTTGGGAAGTGGGATCCTCGACTGGAACCAGATATTGTTGTCTTTCATGCGGTATTAAATGCCTGTGTTCAGCGCAAACAATGGGAAGGAGCATTTTGGGTTTTGCAGCAGTTGAAGCAACAAGGCCTACAGCCTGCCACAACAACATATGGACTTGTTATGGAGGTGATGCTAGCATGTGGCAAGTACAACTTGGTTCATGAGTTTTTCAAGAAAGTGCAGAAATCTTCTATACCAAATGCTTTAACTTACCGAGTTATTGTGAACACTCTTTGGAGAGAAGGTAAAGTAGATGAGGCTGTATCGGTTGTTCACAACATGGAAAGACGAGGAATAGTAGGTTATGCGGCTCTCTATTATGACTTTGCTCGATGTCTTTGTAGTGCTGGAAGGTGCCAGGAAGCACTAATGCAGATTGAGAAGATATGTAAGGTTGCAAGTAAGCCTCTAGTAGTGACTTACACTGGTCTAATTCAAGCTTGTTTGGATGCCGGAAGCGTTGAAAATGCGGCCTATGTTTTCAAACAAATGGAGAACATTTGCTCCCCGAATCTTGTTACTTGCAACATAATGCTGAAATCTTTCTTGGACCACGGAATGTTTGAAAAAGCGATAGATCTGTTCCTGAGGATGTTAGATGATGGGAATAATATCACGAGCAGATCCGATTATAAGGTTCGGATAATACCAGATAGCTACACTTTCAACACCTTGTTAGACGCCTGCGTTGCAGAAAAGAGGTGGGATGATTTCGAGTATGTATACAAAAGGATGTTACACCATGGGTTTCACTTCAATGCTAAACGCCATCTTCGGATGATATTGGACGCTTGCAAAGCTGGAAAGGCGGAGCTGCTGGACATAACCTGGATGCACTTGACTGAGGCAGACCGGATCCCACCTCCTCCCCTCGTGAAGGAACGGTTCTGCACAAAGCTAGAGAAAGATGACTATGCTGCTGCTCTCTCCTGTATTACCACTCAAAATCTTGGTGAGCCACAGGCATTCTCGAAGGCAGCGTGGTTGAAGTTGTTCATGGAAAACGCGGAACGGTTTCAGAAAGACACTTTTGTACGGTTGGTTGACGAGGGTAGCATTCTTGTAAACAGAAGTGATAGGTCGAACCCTGTATATCAAAACCTTATGGCAGCTAGCGGAGAAGTTGATAGAATCCGTTTAACGGGAGCTGCAGTTTCTACACGTGAAACTGTATCTACAACTCAAACGGAACCAGCTATCAATTCAAAGATGTATTTTCCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

917

Amino Acids

104.85

Weight (kDa)

9.4

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	644 - 690	1.2e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2157
AccB1I	GGYRCC	1 cut(s)	1878
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccI	GTMKAC	2 cut(s)	735, 2247
AccII	CGCG	1 cut(s)	2531
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
AclI	AACGTT	1 cut(s)	1240
AclWI	GGATC	5 cut(s)	1493, 1506, 2142, 2374, 2387
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	6 cut(s)	237, 251, 257, 442, 985, 995
AcvI	CACGTG	1 cut(s)	2687
AcyI	GRCGYC	2 cut(s)	461, 2205
AfaI	GTAC	7 cut(s)	281, 676, 684, 754, 1290, 1673, 2559
AfiI	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
AflIII	ACRYGT	1 cut(s)	2684
AjnI	CCWGG	4 cut(s)	383, 649, 1881, 2351
AjuI	GAANNNNNNNTTGG	2 cut(s)	2054, 2086
AloI	GAACNNNNNNTCC	2 cut(s)	2012, 2044
Alw21I	GWGCWC	1 cut(s)	1132
Alw26I	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
Alw44I	GTGCAC	1 cut(s)	1128
AlwI	GGATC	5 cut(s)	1493, 1506, 2142, 2374, 2387
Ama87I	CYCGRG	2 cut(s)	703, 781
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	7 cut(s)	18, 700, 778, 1307, 1609, 1995, 2745
ApaLI	GTGCAC	1 cut(s)	1128
ApeKI	GCWGC	9 cut(s)	328, 974, 1591, 2338, 2441, 2444, 2501, 2633, 2672
ApoI	RAATTY	6 cut(s)	237, 251, 257, 442, 985, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
AspLEI	GCGC	1 cut(s)	1560
AspS9I	GGNCC	3 cut(s)	701, 779, 2074
AsuC2I	CCSGG	4 cut(s)	33, 704, 705, 1480
AsuHPI	GGTGA	4 cut(s)	19, 1013, 1663, 2489
AsuII	TTCGAA	1 cut(s)	255
AsuNHI	GCTAGC	3 cut(s)	1060, 1657, 2636
AvaI	CYCGRG	2 cut(s)	703, 781
AvaII	GGWCC	1 cut(s)	2074
AxyI	CCTNAGG	2 cut(s)	435, 2111
BaeGI	GKGCMC	2 cut(s)	1132, 1486
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	2 cut(s)	1498, 2379
BanI	GGYRCC	1 cut(s)	1878
BauI	CACGAG	3 cut(s)	1020, 2140, 2396
BbrPI	CACGTG	1 cut(s)	2687
Bbv12I	GWGCWC	1 cut(s)	1132
BbvI	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
BccI	CCATC	7 cut(s)	608, 615, 692, 770, 839, 2120, 2301
BceAI	ACGGC	2 cut(s)	250, 794
BciT130I	CCWGG	4 cut(s)	385, 651, 1883, 2353
BciVI	GTATCC	1 cut(s)	1371
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	4 cut(s)	33, 704, 705, 1480
BcoDI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BfaI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
BfmI	CTRYAG	2 cut(s)	1613, 2673
BfuI	GTATCC	1 cut(s)	1371
BglII	AGATCT	1 cut(s)	2101
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
Bme18I	GGWCC	1 cut(s)	2074
BmeT110I	CYCGRG	2 cut(s)	703, 781
BmgT120I	GGNCC	3 cut(s)	701, 779, 2074
BmiI	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
BmrFI	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	5 cut(s)	406, 1110, 1644, 1963, 2346
BmtI	GCTAGC	3 cut(s)	1064, 1661, 2640
BmuI	ACTGGG	1 cut(s)	434
BoxI	GACNNNNGTC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	1216
Bpu14I	TTCGAA	1 cut(s)	255
BpuMI	CCSGG	4 cut(s)	33, 704, 705, 1480
BsaAI	YACGTR	1 cut(s)	2687
BsaHI	GRCGYC	2 cut(s)	461, 2205
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	4 cut(s)	703, 1479, 2077, 2266
BsaWI	WCCGGW	2 cut(s)	117, 2376
BsaXI	ACNNNNNCTCC	8 cut(s)	361, 391, 1753, 1783, 2012, 2042, 2661, 2691
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
Bse1I	ACTGG	6 cut(s)	429, 640, 718, 1199, 1512, 1954
Bse21I	CCTNAGG	2 cut(s)	435, 2111
Bse3DI	GCAATG	2 cut(s)	874, 1344
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	4 cut(s)	385, 651, 1883, 2353
BseDI	CCNNGG	4 cut(s)	703, 1479, 2077, 2266
BseLI	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
BseMI	GCAATG	2 cut(s)	874, 1344
BseMII	CTCAG	6 cut(s)	390, 426, 1089, 1273, 2102, 2358
BseNI	ACTGG	6 cut(s)	429, 640, 718, 1199, 1512, 1954
BseRI	GAGGAG	2 cut(s)	1446, 2379
BseSI	GKGCMC	2 cut(s)	1132, 1486
BseXI	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
BsgI	GTGCAG	4 cut(s)	1101, 1263, 1724, 2398
Bsh1236I	CGCG	1 cut(s)	2531
BshFI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BshNI	GGYRCC	1 cut(s)	1878
BsiHKAI	GWGCWC	1 cut(s)	1132
BsiHKCI	CYCGRG	2 cut(s)	703, 781
BsiSI	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
BsmAI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BsmBI	CGTCTC	1 cut(s)	1192
BsmFI	GGGAC	1 cut(s)	310
BsmI	GAATGC	2 cut(s)	2489, 2580
BsnI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
Bso31I	GGTCTC	1 cut(s)	115
BsoBI	CYCGRG	2 cut(s)	703, 781
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	1132, 1486
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
Bsp19I	CCATGG	1 cut(s)	2266
BspACI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
BspANI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BspCNI	CTCAG	6 cut(s)	391, 427, 1090, 1272, 2103, 2359
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	2531
BspHI	TCATGA	1 cut(s)	1684
BspLI	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
BspMAI	CTGCAG	1 cut(s)	2677
BspOI	GCTAGC	3 cut(s)	1064, 1661, 2640
BspPI	GGATC	5 cut(s)	1493, 1506, 2142, 2374, 2387
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	1878
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	874, 1344
BsrI	ACTGG	6 cut(s)	429, 640, 718, 1199, 1512, 1954
BssECI	CCNNGG	4 cut(s)	703, 1479, 2077, 2266
BssMI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
BssNAI	GTATAC	1 cut(s)	2248
BssNI	GRCGYC	2 cut(s)	461, 2205
BssSI	CACGAG	3 cut(s)	1020, 2140, 2396
BssT1I	CCWWGG	1 cut(s)	2266
Bst1107I	GTATAC	1 cut(s)	2248
Bst2BI	CACGAG	3 cut(s)	1020, 2140, 2396
Bst2UI	CCWGG	4 cut(s)	385, 651, 1883, 2353
Bst4CI	ACNGT	8 cut(s)	205, 301, 393, 682, 2409, 2538, 2562, 2695
Bst6I	CTCTTC	4 cut(s)	155, 339, 405, 720
BstACI	GRCGYC	2 cut(s)	461, 2205
BstAPI	GCANNNNNTGC	2 cut(s)	364, 767
BstBAI	YACGTR	1 cut(s)	2687
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	7 cut(s)	512, 1062, 1620, 1659, 2209, 2317, 2638
BstDEI	CTNAG	9 cut(s)	308, 399, 435, 915, 1098, 1259, 1461, 2111, 2367
BstDSI	CCRYGG	2 cut(s)	2077, 2266
BstENI	CCTNNNNNAGG	1 cut(s)	2399
BstFNI	CGCG	1 cut(s)	2531
BstHHI	GCGC	1 cut(s)	1560
BstKTI	GATC	8 cut(s)	277, 338, 1150, 1454, 1501, 2104, 2150, 2382
BstMAI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BstMBI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
BstMWI	GCNNNNNNNGC	9 cut(s)	364, 767, 864, 878, 1231, 1600, 2213, 2321, 2330
BstNI	CCWGG	4 cut(s)	385, 651, 1883, 2353
BstNSI	RCATGY	2 cut(s)	1096, 1665
BstPAI	GACNNNNGTC	1 cut(s)	394
BstSCI	CCNGG	8 cut(s)	31, 383, 649, 702, 703, 1478, 1881, 2351
BstSFI	CTRYAG	2 cut(s)	1613, 2673
BstSLI	GKGCMC	2 cut(s)	1132, 1486
BstUI	CGCG	1 cut(s)	2531
BstV1I	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
BstX2I	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
BstYI	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
BstZ17I	GTATAC	1 cut(s)	2248
Bsu36I	CCTNAGG	2 cut(s)	435, 2111
BsuI	GTATCC	1 cut(s)	1371
BsuRI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BtgI	CCRYGG	2 cut(s)	2077, 2266
BtsIMutI	CAGTG	2 cut(s)	882, 1947
Cac8I	GCNNGC	7 cut(s)	512, 1062, 1620, 1659, 2209, 2317, 2638
CciI	TCATGA	1 cut(s)	1684
CfoI	GCGC	1 cut(s)	1560
Cfr13I	GGNCC	3 cut(s)	701, 779, 2074
Cfr9I	CCCGGG	1 cut(s)	703
CseI	GACGC	3 cut(s)	450, 2213, 2321
Csp6I	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
CviAII	CATG	9 cut(s)	515, 1093, 1334, 1532, 1662, 1685, 1804, 2267, 2521
CviQI	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
DdeI	CTNAG	9 cut(s)	308, 399, 435, 915, 1098, 1259, 1461, 2111, 2367
DpnI	GATC	8 cut(s)	276, 337, 1149, 1453, 1500, 2103, 2149, 2381
DpnII	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	4 cut(s)	155, 339, 405, 720
EarI	CTCTTC	4 cut(s)	155, 339, 405, 720
EciI	GGCGGA	1 cut(s)	2348
Eco130I	CCWWGG	1 cut(s)	2266
Eco147I	AGGCCT	2 cut(s)	1309, 1611
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	2074
Eco72I	CACGTG	1 cut(s)	2687
Eco81I	CCTNAGG	2 cut(s)	435, 2111
Eco88I	CYCGRG	2 cut(s)	703, 781
EcoNI	CCTNNNNNAGG	1 cut(s)	2399
EcoRI	GAATTC	2 cut(s)	251, 995
EcoRII	CCWGG	4 cut(s)	383, 649, 1881, 2351
EcoT14I	CCWWGG	1 cut(s)	2266
ErhI	CCWWGG	1 cut(s)	2266
Esp3I	CGTCTC	1 cut(s)	1192
FaeI	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
FalI	AAGNNNNNCTT	2 cut(s)	1661, 1693
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	9 cut(s)	514, 1092, 1333, 1531, 1661, 1684, 1803, 2266, 2520
FauNDI	CATATG	2 cut(s)	1416, 1633
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	735, 2247
FspBI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
GlaI	GCGC	1 cut(s)	1559
GsuI	CTGGAG	1 cut(s)	1216
HaeIII	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
HapII	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
HgaI	GACGC	3 cut(s)	450, 2213, 2321
HhaI	GCGC	1 cut(s)	1560
Hin1I	GRCGYC	2 cut(s)	461, 2205
Hin1II	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
Hin6I	GCGC	1 cut(s)	1558
HinP1I	GCGC	1 cut(s)	1558
HincII	GTYRAC	2 cut(s)	524, 2569
HindII	GTYRAC	2 cut(s)	524, 2569
HindIII	AAGCTT	1 cut(s)	1962
HinfI	GANTC	8 cut(s)	166, 349, 448, 475, 1050, 1140, 2035, 2655
HpaII	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
HphI	GGTGA	4 cut(s)	19, 1013, 1663, 2489
HpyCH4III	ACNGT	8 cut(s)	205, 301, 393, 682, 2409, 2538, 2562, 2695
HpyCH4IV	ACGT	3 cut(s)	520, 1240, 2686
HpyF10VI	GCNNNNNNNGC	9 cut(s)	364, 767, 864, 878, 1231, 1600, 2213, 2321, 2330
HpyF3I	CTNAG	9 cut(s)	308, 399, 435, 915, 1098, 1259, 1461, 2111, 2367
HpySE526I	ACGT	3 cut(s)	520, 1240, 2686
Hsp92I	GRCGYC	2 cut(s)	461, 2205
Hsp92II	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
HspAI	GCGC	1 cut(s)	1558
Kpn2I	TCCGGA	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
LmnI	GCTCC	6 cut(s)	430, 1042, 1574, 2033, 2335, 2669
Lsp1109I	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
LweI	GCATC	5 cut(s)	406, 1110, 1644, 1963, 2346
MaeI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
MaeII	ACGT	3 cut(s)	520, 1240, 2686
MaeIII	GTNAC	6 cut(s)	709, 910, 1393, 1939, 2041, 2259
MalI	GATC	8 cut(s)	276, 337, 1149, 1453, 1500, 2103, 2149, 2381
MboI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
MflI	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
MhlI	GDGCHC	2 cut(s)	1132, 1486
MlsI	TGGCCA	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	20
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
MscI	TGGCCA	1 cut(s)	20
MslI	CAYNNNNRTG	3 cut(s)	867, 1091, 2280
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
MspR9I	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
Mva1269I	GAATGC	2 cut(s)	2489, 2580
MvaI	CCWGG	4 cut(s)	385, 651, 1883, 2353
MvnI	CGCG	1 cut(s)	2531
MwoI	GCNNNNNNNGC	9 cut(s)	364, 767, 864, 878, 1231, 1600, 2213, 2321, 2330
NciI	CCSGG	4 cut(s)	33, 704, 705, 1480
NcoI	CCATGG	1 cut(s)	2266
NdeI	CATATG	2 cut(s)	1416, 1633
NdeII	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
NheI	GCTAGC	3 cut(s)	1060, 1657, 2636
NlaIII	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
NlaIV	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
NmuCI	GTSAC	1 cut(s)	1939
NspI	RCATGY	2 cut(s)	1096, 1665
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	1684
PceI	AGGCCT	2 cut(s)	1309, 1611
PcsI	WCGNNNNNNNCGW	1 cut(s)	2501
PctI	GAATGC	2 cut(s)	2489, 2580
PdmI	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
PfeI	GAWTC	8 cut(s)	166, 349, 448, 475, 1050, 1140, 2035, 2655
PflMI	CCANNNNNTGG	1 cut(s)	1177
PfoI	TCCNGGA	1 cut(s)	383
PmaCI	CACGTG	1 cut(s)	2687
PmlI	CACGTG	1 cut(s)	2687
Ppu21I	YACGTR	1 cut(s)	2687
PshAI	GACNNNNGTC	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	2157
Psp1406I	AACGTT	1 cut(s)	1240
Psp6I	CCWGG	4 cut(s)	383, 649, 1881, 2351
PspCI	CACGTG	1 cut(s)	2687
PspGI	CCWGG	4 cut(s)	383, 649, 1881, 2351
PspN4I	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
PspPI	GGNCC	3 cut(s)	701, 779, 2074
PsrI	GAACNNNNNNTAC	2 cut(s)	1779, 1811
PstI	CTGCAG	1 cut(s)	2677
PsuI	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
RsaI	GTAC	7 cut(s)	281, 676, 684, 754, 1290, 1673, 2559
RsaNI	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
RseI	CAYNNNNRTG	3 cut(s)	867, 1091, 2280
Sau3AI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
Sau96I	GGNCC	3 cut(s)	701, 779, 2074
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
SduI	GDGCHC	2 cut(s)	1132, 1486
SfaNI	GCATC	5 cut(s)	406, 1110, 1644, 1963, 2346
SfcI	CTRYAG	2 cut(s)	1613, 2673
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	2074
SmaI	CCCGGG	1 cut(s)	705
SmiMI	CAYNNNNRTG	3 cut(s)	867, 1091, 2280
SseBI	AGGCCT	2 cut(s)	1309, 1611
SsiI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
SspI	AATATT	1 cut(s)	1158
SspMI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
StuI	AGGCCT	2 cut(s)	1309, 1611
StyD4I	CCNGG	8 cut(s)	31, 383, 649, 702, 703, 1478, 1881, 2351
StyI	CCWWGG	1 cut(s)	2266
TaaI	ACNGT	8 cut(s)	205, 301, 393, 682, 2409, 2538, 2562, 2695
TaiI	ACGT	3 cut(s)	523, 1243, 2689
TatI	WGTACW	5 cut(s)	279, 674, 752, 1288, 1671
TauI	GCSGC	2 cut(s)	1835, 1997
TfiI	GAWTC	8 cut(s)	166, 349, 448, 475, 1050, 1140, 2035, 2655
TscAI	CASTG	2 cut(s)	889, 1954
TseFI	GTSAC	1 cut(s)	1939
TseI	GCWGC	9 cut(s)	328, 974, 1591, 2338, 2441, 2444, 2501, 2633, 2672
Tsp45I	GTSAC	1 cut(s)	1939
TspGWI	ACGGA	3 cut(s)	2094, 2648, 2726
TspMI	CCCGGG	1 cut(s)	703
TspRI	CASTG	2 cut(s)	889, 1954
Van91I	CCANNNNNTGG	1 cut(s)	1177
VneI	GTGCAC	1 cut(s)	1128
VpaK11BI	GGWCC	1 cut(s)	2074
XagI	CCTNNNNNAGG	1 cut(s)	2399
XapI	RAATTY	6 cut(s)	237, 251, 257, 442, 985, 995
XceI	RCATGY	2 cut(s)	1096, 1665
XmaI	CCCGGG	1 cut(s)	703
XmiI	GTMKAC	2 cut(s)	735, 2247
XmnI	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
XspI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.