Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012972

Physical Location & Seq

Genomic Coordinates Reverse (-)

27781546 .. 27782339

Gene Structure 794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATGCCAACCCAAAGTGGCCAGCTCCAATGGCTAAAAACCAATATTAGAAACATTGAATCATTACTTGGGGTACTTATATCCCAAGCCCTATATATACTCCTTCACTTACATCAACTTCCCCATAAATCTTCCGATAAAAATCCCCCCCTCCAAAAAAAAAAAAAAAAATCATTAGCCATGGGGAGGAGAAAAATTGAGATGAAAGTGGTGGAGGATAGCAGCTCTAGGCAGGTGACCTTCTCCAAGCGCAGGAGTGGCGTGTTCAAGAAAGCAAACGAGCTCGCCATCCTGTGCGGCGCTGAGATTGCCGTCCTTGTTTTCTCTCCGGGAGGGAAGCCCTTCTCGTTTGGGCACCCGAATGTGGAGTCTATCGCAGATAGGTTTCTAAATGAGGAGTGCCCTAAATCAAAGTTTAGGGTTTCAAAGAATGATGAAAAAGCGGGGAGGCTTAACCAGCAACTGGAGGACATGGACAGCCAGTTGGAGGCTGAGAAGAAAAGAGGACTTGTGCTTGACAAGGCTGTACTGAAAGCAAGGGGTTTGCCACTCAAAAGCAAACCGCCGAGCTTTCGTGAGCAGAGCAGGGCAGATCTTCGAAAAATGAAGGCGTCGCTGGAGGCGCTGCGCGAGACCGTGAAAGAAAGAGCCACTGAGGTGGAGGCATCGTCTTCGCTGCTTCTCCTGGCAAATGACAGGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

236

Amino Acids

26.47

Weight (kDa)

10.0

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	71 - 117	3.9e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34440 AT3G66656
fragaria_vesca	FvH4_3g05940 FvH4_3g36320
malus_domestica	MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica	Prupe.4G077800_v2.0.a1
pyrus_communis	pycom05g26560
rosa_chinensis	RchiOBHm_Chr5g0013531
rosa_laevigata	RLG00000032023
rosa_multiflora	Rmu_sc0014653.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063040
rosa_rugosa	Rorug05G0010300
rosa_samantha	Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana	Rw5G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccII	CGCG	1 cut(s)	630
AciI	CCGC	3 cut(s)	297, 443, 563
AcoI	YGGCCR	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	611
AfaI	GTAC	2 cut(s)	75, 528
AfiI	CCNNNNNNNGG	5 cut(s)	186, 252, 364, 463, 487
AgsI	TTSAA	3 cut(s)	59, 268, 426
AjnI	CCWGG	1 cut(s)	684
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	4 cut(s)	25, 225, 283, 570
AluI	AGCT	4 cut(s)	25, 225, 283, 570
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	626, 696
AlwNI	CAGNNNCTG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	3 cut(s)	222, 625, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	4 cut(s)	252, 302, 625, 630
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	598
BaeGI	GKGCMC	2 cut(s)	357, 404
BalI	TGGCCA	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	234, 612, 663
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	1 cut(s)	686
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	626, 696
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	2 cut(s)	303, 626
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	4 cut(s)	223, 298, 626, 677
BlsI	GCNGC	4 cut(s)	224, 299, 627, 678
Bme1390I	CCNGG	2 cut(s)	330, 686
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	2 cut(s)	330, 686
BmsI	GCATC	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	663
BpmI	CTGGAG	2 cut(s)	485, 638
Bpu14I	TTCGAA	1 cut(s)	598
BpuMI	CCSGG	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	5 cut(s)	186, 252, 364, 463, 487
Bse1I	ACTGG	2 cut(s)	468, 481
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	5 cut(s)	186, 252, 364, 463, 487
BseMII	CTCAG	3 cut(s)	294, 483, 645
BseNI	ACTGG	2 cut(s)	468, 481
BseRI	GAGGAG	2 cut(s)	202, 410
BseSI	GKGCMC	2 cut(s)	357, 404
BseXI	GCAGC	3 cut(s)	234, 612, 663
Bsh1236I	CGCG	1 cut(s)	630
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	5 cut(s)	186, 252, 364, 463, 487
BsmAI	GTCTC	2 cut(s)	626, 696
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	626
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	3 cut(s)	285, 357, 404
Bsp143I	GATC	1 cut(s)	592
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	3 cut(s)	297, 443, 563
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	3 cut(s)	295, 484, 646
BspFNI	CGCG	1 cut(s)	630
BspLI	GGNNCC	1 cut(s)	356
BspMI	ACCTGC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	468, 481
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	592
BssNI	GRCGYC	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	1 cut(s)	637
BstACI	GRCGYC	1 cut(s)	611
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	2 cut(s)	23, 285
BstDEI	CTNAG	3 cut(s)	303, 492, 654
BstDSI	CCRYGG	1 cut(s)	180
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	1 cut(s)	630
BstH2I	RGCGCY	2 cut(s)	303, 626
BstHHI	GCGC	4 cut(s)	252, 302, 625, 630
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	2 cut(s)	626, 696
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 258, 308, 457, 622
BstNI	CCWGG	1 cut(s)	686
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	328, 684
BstSLI	GKGCMC	2 cut(s)	357, 404
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	234, 612, 663
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	592
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	651
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	23, 285
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	4 cut(s)	252, 302, 625, 630
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	74, 527
CviAII	CATG	2 cut(s)	181, 472
CviQI	GTAC	2 cut(s)	74, 527
DdeI	CTNAG	3 cut(s)	303, 492, 654
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	184, 475
FaiI	YATR	7 cut(s)	80, 94, 96, 98, 126, 182, 473
FatI	CATG	2 cut(s)	180, 471
FauI	CCCGC	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	223, 298, 626, 677
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	223, 298, 626, 677
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	4 cut(s)	251, 301, 624, 629
GluI	GCNGC	4 cut(s)	223, 298, 626, 677
GsuI	CTGGAG	2 cut(s)	485, 638
HaeII	RGCGCY	2 cut(s)	303, 626
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	600
HhaI	GCGC	4 cut(s)	252, 302, 625, 630
Hin1I	GRCGYC	1 cut(s)	611
Hin1II	CATG	2 cut(s)	184, 475
Hin6I	GCGC	4 cut(s)	250, 300, 623, 628
HinP1I	GCGC	4 cut(s)	250, 300, 623, 628
HinfI	GANTC	2 cut(s)	59, 368
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	268, 575
Hpy99I	CGWCG	1 cut(s)	616
HpyAV	CCTTC	4 cut(s)	113, 250, 352, 601
HpyCH4III	ACNGT	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 258, 308, 457, 622
HpyF3I	CTNAG	3 cut(s)	303, 492, 654
Hsp92I	GRCGYC	1 cut(s)	611
Hsp92II	CATG	2 cut(s)	184, 475
HspAI	GCGC	4 cut(s)	250, 300, 623, 628
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	3 cut(s)	234, 612, 663
LweI	GCATC	1 cut(s)	674
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	4 cut(s)	123, 508, 587, 663
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	3 cut(s)	285, 357, 404
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	1 cut(s)	195
MluNI	TGGCCA	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	465
Mox20I	TGGCCA	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	2 cut(s)	360, 656
Msp20I	TGGCCA	1 cut(s)	21
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	330, 686
MteI	GCGCNGCGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	686
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	5 cut(s)	31, 258, 308, 457, 622
NciI	CCSGG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	184, 475
NlaIV	GGNNCC	1 cut(s)	356
NmeAIII	GCCGAG	1 cut(s)	591
NmuCI	GTSAC	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	598
OliI	CACNNNNGTG	1 cut(s)	656
PaqCI	CACCTGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	4 cut(s)	224, 299, 627, 678
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	684
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	2 cut(s)	75, 528
RsaNI	GTAC	2 cut(s)	74, 527
RseI	CAYNNNNRTG	2 cut(s)	360, 656
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	4 cut(s)	223, 298, 626, 677
Sau3AI	GATC	1 cut(s)	592
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	330, 686
SduI	GDGCHC	3 cut(s)	285, 357, 404
SetI	ASST	8 cut(s)	27, 227, 237, 242, 285, 386, 572, 660
SfaNI	GCATC	1 cut(s)	674
SfuI	TTCGAA	1 cut(s)	598
SmiMI	CAYNNNNRTG	2 cut(s)	360, 656
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	3 cut(s)	297, 443, 563
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	328, 684
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	637
TaqI	TCGA	1 cut(s)	598
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	222, 625, 676
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	218, 450, 620
TspRI	CASTG	1 cut(s)	658
Van91I	CCANNNNNTGG	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.